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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0345600 |
| Transcript ID | LotjaGi6g1v0345600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|I1M2I5|I1M2I5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0345600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65825505..65828978) extracted from Lotus japonicus Gifu genome v1.2.
AAAACGGGGTGTTACAGCTTCTAGTTTGGTTCTTTTGTTTGCTTTGCACGGTTTTGCTTTTGCAGCTAAGAAGAAGGCCA CAAGTAAAATTCAGGAAGAAAGTAATGGTCGAATTATAAGGACATCAGAAAATGGAAAATGCTCAACAGAAGCTTCAGAA GATGTGGATATCGTTATTGTGGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTACACGCTTGGAAAGGTAGAAAGTTTTTT TTTTTTTTTTTTTAAGTTTGTGAAATGAAACAGTTTTCTTGAGTCACAACCTGCAAATAAGTTTTATCTCAATATATATG TTTGTACATGAGGGTGAGCTCAACGCAACCTTAAGGTTGCTGCTATGTGACTTTGCAGTCATAGGTTCGAGCGGTAGAAT CAATTTTTTTCCAAAAATGCAAGGTAAAACTACCTGCATGAGATCCACTTTGTGTCACAAGTTTTGTCTTTTCGATATGT TTGTACTTATGTAACCGGATCCAAGTGGAAAATATATATGTTTTGGAGAACCTTGGGGATTTTACACAATGAAGCATATG TTTATTGTTTTAAAGTGATCAATGATCTTGAGTTTTATTTCATGTTTCAGGATGGAAGGAGAGTGCATGTTATTGAAAGG GACCTAACTGAACCAGATAGGATTGTGGGTGAATTGCTACAACCTGGAGGTTATCTTAAGCTAATTGAGCTGGGTCTTGA AGGTAAGCAACTACGCAAGAAACATGTCAAATGTGACACACATATATTAGAATTAGAATTTGATAGATGAGGATTTTTAG TCCATTGAATTTGCAAATTCCTCTGCCTTTGCTGGACAAATTCAAGGCACTTAAAAAATGATTGTTATGAGTCATTGCAG ATTGTGTGGATGAAATTGATGCTCAGAGAGTCTTTGGATATGCACTTTACAAGGATGGGAAGAATACCAAACTTTCCTAT CCCTTGAAAAAATTTGACTCTGATATCTCTGGGAGAAGCTTTCACAATGGCCGTTTCATTCAGAGAATGCGAGAGAAGGC TTCATCTCTTCCAAAGTACAAGTTTTTATCATATTTTCATTCCTGAAAGGATTCCTTGCTTCTGAAGTTAAAAAAAATTC TTGGAAAACACCTTCTTACTTCCAATTTTGTGCAGTGTCAAGTTAGAACAAGGAACTGTCGCATCTCTACTTGAAGAAAA TGGGACAATCAAAGGGGTGCTCTACAAAACCAAGAGTGGACAAGAGCTCACAGCAATGGCTCCTCTCACCATAGTATGTG ATGGTTGTTTCTCCAACTTGAGACGTTCTCTTTGCAACCCAAAGGTAATCATGCTGATTATTGATTGTTTGTTTAATGTG TATTTGGAAACTTGGTAGATTTACACGTTTGTGGAGATGTGCTTCAGAAAAGAACTCAGGTTGATTCACATGTGTTTGGA TCAGTGTTCTCAGAATAAATTTTGGATAAAATTGATTTTGGTAATTCTGATTATGGTAAAAAGTGAGTTGAAAGTGAAAT GATTTTTGTTTGGATTCGTTTAAAATAGGAAAAGTGATTTCGATAGGATAATTTTGTGAAATCCAGTTATGAAATCTCAT ATGTACACCACATAAGCTACTCCCCCTATTGATTTCTAGCTTCTATGCACTCCCAAAATCAATTCTCTTAAGTGTGTTTG GATACACGGTAGATTGTCATGTTGGAAGGAGAATTTATTCCGAGAGAAGCTACTAGTAGCATTTTAGTAGAAGTGATTTT GGAAGATTTGAAACGTGAATCCAAACATGATGTAAGTTGATTGCCAAACATCTATAGAACCACCTAGAAGTGATTCTAGT CAATTAGAAGTGATTCTAATACTCTCAAACGTGGAACCAAACACATACTAAGAGCAGCTTCTGTGGAGAGGGTACCAATT CTGAGAAGAATAAAAGTGGATCCAAACATATTATGTTATTGCACCTACATGGTTTTATCTTTTTTCAATTATAGTTCATT GTTGCTTGACACATGATGAGTACACTTATTTGTACAGGTTGATGTACCATCTCATTTTGTTGGTCTAGTTCTGGAAAACT GCAACCTTCCACATGCAAACCATGGCCATGTTGTCTTGGCTGATCCTTCTCCCATCTTGTTTTACCCCATTAGCAGCACT GAGATTCGGTGTTTGGTTGATGTGCCTGGCCAAAAATTACCATCCATTGGTAATGGTGACATGGCTCATTATTTGAAAAC AGTAGTAGCTCCTCAGGTACAATAATCATTCATTCTTACATCTTACAATAATCATTCTTGCGGTTAGGGTCGCGGTTGTT GGTGCATTGTGAAATTACGGACAAATGCAGGTTGGAGTGGCCGCGATGCTGATGCGGGGGCTCCATAACTCCTTATGTTG CGGCTGCAAACGTTTCTGCAACTAATGGAAGGGAATTGAACTGTGTTTCAGGTTCCGCAAGAGCTGCAATCTGCATTTGT AGCAGCGGTTGATAAAGGAAGCATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCTCAGCCCACACCCGGTGCCC TTCTGATGGGAGACGCCTTCAACATGCGCCACCCGTTAACTGGAGGAGGAATGACTGTTGCTTTGTCTGACATTGTTTTG TTAAGGGATCTTCTTAGGCCTTTGCAGGATCTGCATTGTGCTTCTTCTCTTTGCAAATATCTGGAATCATTCTACACCCT TCGCAAGGTAAGTAGACTCGTTCGGATGCAAACCAAATAGCACTTATCAAGTGGAGCATATTTAGTGCTTTTTCCAGTAA ATAGACCTTAATAAGCTCGTATCCAAACAGACTCTTAATATACAATTTATAAAGTGTTACCTGCCTCCTTAAGCTCTCTC TTGTATTCTTAACTTGCTAAATACCCTTTGTCATGTTTGATTAGTAACTTAATGAGAAACAACTTGGTTTTGTTTGCAGC CAGTGGCATCTACAATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTGTGCTTCCCCTGATCCAGCTAGTAAGGAA ATGAGGCAGGCATGTTTTGATTATTTGACACTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTTCTCTCTGGTCTAAA TCCAAAGCCATTAAGCTTAGTTCTCCACTTCTTTGCCGTGGCTATTTATGGTGTTGGTCGTTTATTGGTACCATTTCCTT CTCCAAAACGCATGTGGATTGGAGCTAGATTGATTTCGGTTAGTATATCTCTTTTTTTCTCAGATACCAATGCTAATCTA TGGTGGAACAAGTTCTGTATATTAGTGATTAATGGTAGAATTGAATTTATGATTCTGAATCAAAAATTTTATTAACATTT CAGGGTGCATCTGGTATTATATTTCCTATTATTAAGGCTGAAGGAATCAGACAAATGTTCTTCCCAGTAACTGTGCCTGC ATATTACAGAGCACCTCCTGCCAAATTTGCATGA
CDS sequence (LotjaGi6g1v0345600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAGAGAAGGCTTCATCTCTTCCAAATGTCAAGTTAGAACAAGGAACTGTCGCATCTCTACTTGAAGAAAATGGGAC AATCAAAGGGGTGCTCTACAAAACCAAGAGTGGACAAGAGCTCACAGCAATGGCTCCTCTCACCATAGTATGTGATGGTT GTTTCTCCAACTTGAGACGTTCTCTTTGCAACCCAAAGGTTGATGTACCATCTCATTTTGTTGGTCTAGTTCTGGAAAAC TGCAACCTTCCACATGCAAACCATGGCCATGTTGTCTTGGCTGATCCTTCTCCCATCTTGTTTTACCCCATTAGCAGCAC TGAGATTCGGTGTTTGGTTGATGTGCCTGGCCAAAAATTACCATCCATTGGTAATGGTGACATGGCTCATTATTTGAAAA CAGTAGTAGCTCCTCAGGTTCCGCAAGAGCTGCAATCTGCATTTGTAGCAGCGGTTGATAAAGGAAGCATAAGAAGCATG CCAAACAGAAGCATGCCTGCATCTCCTCAGCCCACACCCGGTGCCCTTCTGATGGGAGACGCCTTCAACATGCGCCACCC GTTAACTGGAGGAGGAATGACTGTTGCTTTGTCTGACATTGTTTTGTTAAGGGATCTTCTTAGGCCTTTGCAGGATCTGC ATTGTGCTTCTTCTCTTTGCAAATATCTGGAATCATTCTACACCCTTCGCAAGCCAGTGGCATCTACAATAAACACATTA GCTGGGGCATTATACAAGGTGTTTTGTGCTTCCCCTGATCCAGCTAGTAAGGAAATGAGGCAGGCATGTTTTGATTATTT GACACTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTTCTCTCTGGTCTAAATCCAAAGCCATTAAGCTTAGTTCTCC ACTTCTTTGCCGTGGCTATTTATGGTGTTGGTCGTTTATTGGTACCATTTCCTTCTCCAAAACGCATGTGGATTGGAGCT AGATTGATTTCGGGTGCATCTGGTATTATATTTCCTATTATTAAGGCTGAAGGAATCAGACAAATGTTCTTCCCAGTAAC TGTGCCTGCATATTACAGAGCACCTCCTGCCAAATTTGCATGA
Protein sequence (LotjaGi6g1v0345600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREKASSLPNVKLEQGTVASLLEENGTIKGVLYKTKSGQELTAMAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLEN CNLPHANHGHVVLADPSPILFYPISSTEIRCLVDVPGQKLPSIGNGDMAHYLKTVVAPQVPQELQSAFVAAVDKGSIRSM PNRSMPASPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLQDLHCASSLCKYLESFYTLRKPVASTINTL AGALYKVFCASPDPASKEMRQACFDYLTLGGVFSDGPIALLSGLNPKPLSLVLHFFAVAIYGVGRLLVPFPSPKRMWIGA RLISGASGIIFPIIKAEGIRQMFFPVTVPAYYRAPPAKFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 290 | 290 | - | – | |
| PANTHER | 1 | 358 | 358 | 4.2E-232 | – | |
| PANTHER | 1 | 358 | 358 | 4.2E-232 | ||
| SUPERFAMILY | 2 | 269 | 268 | 1.04E-22 | ||
| Gene3D | 2 | 233 | 232 | 3.6E-23 | ||
| Pfam | 45 | 317 | 273 | 1.8E-119 | ||
| Gene3D | 65 | 160 | 96 | 3.6E-23 | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 291 | 310 | 20 | - | – | |
| Phobius | 311 | 315 | 5 | - | – | |
| Phobius | 316 | 334 | 19 | - | – | |
| TMHMM | 317 | 334 | 18 | - | – | |
| Phobius | 335 | 360 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0345600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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