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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0350500 |
| Transcript ID | LotjaGi6g1v0350500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA pseudouridine synthase B; TAIR: AT3G57150.1 homologue of NAP57; Swiss-Prot: sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4; TrEMBL-Plants: tr|V7BUX8|V7BUX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0350500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66255705..66257459) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTCTCTCCGAGACCAAGAAGAAGAAGCACCGCAGCGCCACCAAAACCCACGACGGAGCCGCCACCACCGAAGATGA CCACCACACCAAAGACGAACCACAGTTCATGATCAAACCCGAGAAGCTCACACCCACCATCGACACCTCCCAGTGGCCCA TCCTCCTCAAAAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCTCTCCCCTCCGGCTACTCCCCTCTCAAA CGCCCCCTCCCGGAGTATCTCAAATACGGCGTCCTCAACCTCGACAAGCCTGCTAACCCTTCCTCCCATGAGGTCGTCGC CTGGATCAAACGCCTACTCCGCGTCGAGAAAACCGGCCACAGCGGCACTCTTGACCCCAAGGTCACCGGGAATCTCATTG TCTGCATTGACAGGGCCACCCGCCTTGTGAAGTCGCAGCAGGGTGCTGGGAAGGAGTATGTCTGCATTGCCCGACTTCAC TCTGATGTTCCTGATGTTTCCAAGGTTGCTCGCGCCCTCGAGACGCTCACCGGTGCTGTGTTTCAACGCCCGCCGTTGAT CTCTGCTGTCAAGCGCCAGCTCAGGATCAGGACCATTTATGAGAGTAAGCTTCTTGAGTATGACCCTGATAGGCATTTGG TTGTTTTTTGGATTTCATGTGAGGCTGGTACCTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTTCTTGGCGTTGGT GCTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATCATGGGTGAGAAGGATAACATGGTTACTATGCATGATGTTAT TGATGCTCAGTGGGTTTTTGATAATTATAGGGATGAGAGTTATTTGAGAAGGGTTGTTATGCCTTTAGAGGTTCTTTTAA CTAGCTATAAGAGGTTGGTTGTGAAGGATTCTGCTGTGAATGCTATCTGTTATGGTGCCAAGTTGATGATTCCTGGCTTG CTGAGGTTTGAGAATGATATTGAGGCAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAAGCTATTGCTCTTGGGAT TGCTGAGATGACTACTGCTGTGATGGCGACTTGCGATCACGGTGTGGTTGCTAAGATCAAGAGGGTGGTGATGGATAGAG ATACCTATCCCAGGAAGTGGGGTTTGGGCCCTAGGGCTTCAATGAAGAAGAAGCTGATTGCTGCGGGGAAGCTGGATAAG CACGGGAAGCCGAATGAGAGCACTCCCCAAGAGTGGATGAGGAATCTGGTTTTGCCTGCTGGTGGGGATAGCATGATTGC CGGTTTGGCTGCTGCTGCTCCTGAAGCTGATGAGGCGAAGAAAGGCATTGCTGTAGAAGAGGGTAAGAAGGATGGAGATG GGGAAGGGCGTAAGAGGAAGAAACATGAAAGCACTGATAGCCCTGCTTCTGTTCCGGCTAAGAAAGTGAAAGTTGATGTG GTTGTAGACGAAGGGAAAGTAAAGGTGGAGGTTGAGGGTGAGAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGACAAAGA GAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGGAAAGGAGAAGAAAAAGAAGCACAAGGTAAAGGTTGAAGATG GTTCACCAGATTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATGCTGAGGATAATGCTGCTGAAATT AGTAACGGAAAGGAGGACAGTAAGAGCGAAAAGAAGCATAAGAAAAAGAAAAACAAGGACGCAGAGGAAGAATAA
CDS sequence (LotjaGi6g1v0350500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTCTCCGAGACCAAGAAGAAGAAGCACCGCAGCGCCACCAAAACCCACGACGGAGCCGCCACCACCGAAGATGA CCACCACACCAAAGACGAACCACAGTTCATGATCAAACCCGAGAAGCTCACACCCACCATCGACACCTCCCAGTGGCCCA TCCTCCTCAAAAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCTCTCCCCTCCGGCTACTCCCCTCTCAAA CGCCCCCTCCCGGAGTATCTCAAATACGGCGTCCTCAACCTCGACAAGCCTGCTAACCCTTCCTCCCATGAGGTCGTCGC CTGGATCAAACGCCTACTCCGCGTCGAGAAAACCGGCCACAGCGGCACTCTTGACCCCAAGGTCACCGGGAATCTCATTG TCTGCATTGACAGGGCCACCCGCCTTGTGAAGTCGCAGCAGGGTGCTGGGAAGGAGTATGTCTGCATTGCCCGACTTCAC TCTGATGTTCCTGATGTTTCCAAGGTTGCTCGCGCCCTCGAGACGCTCACCGGTGCTGTGTTTCAACGCCCGCCGTTGAT CTCTGCTGTCAAGCGCCAGCTCAGGATCAGGACCATTTATGAGAGTAAGCTTCTTGAGTATGACCCTGATAGGCATTTGG TTGTTTTTTGGATTTCATGTGAGGCTGGTACCTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTTCTTGGCGTTGGT GCTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATCATGGGTGAGAAGGATAACATGGTTACTATGCATGATGTTAT TGATGCTCAGTGGGTTTTTGATAATTATAGGGATGAGAGTTATTTGAGAAGGGTTGTTATGCCTTTAGAGGTTCTTTTAA CTAGCTATAAGAGGTTGGTTGTGAAGGATTCTGCTGTGAATGCTATCTGTTATGGTGCCAAGTTGATGATTCCTGGCTTG CTGAGGTTTGAGAATGATATTGAGGCAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAAGCTATTGCTCTTGGGAT TGCTGAGATGACTACTGCTGTGATGGCGACTTGCGATCACGGTGTGGTTGCTAAGATCAAGAGGGTGGTGATGGATAGAG ATACCTATCCCAGGAAGTGGGGTTTGGGCCCTAGGGCTTCAATGAAGAAGAAGCTGATTGCTGCGGGGAAGCTGGATAAG CACGGGAAGCCGAATGAGAGCACTCCCCAAGAGTGGATGAGGAATCTGGTTTTGCCTGCTGGTGGGGATAGCATGATTGC CGGTTTGGCTGCTGCTGCTCCTGAAGCTGATGAGGCGAAGAAAGGCATTGCTGTAGAAGAGGGTAAGAAGGATGGAGATG GGGAAGGGCGTAAGAGGAAGAAACATGAAAGCACTGATAGCCCTGCTTCTGTTCCGGCTAAGAAAGTGAAAGTTGATGTG GTTGTAGACGAAGGGAAAGTAAAGGTGGAGGTTGAGGGTGAGAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGACAAAGA GAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGGAAAGGAGAAGAAAAAGAAGCACAAGGTAAAGGTTGAAGATG GTTCACCAGATTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATGCTGAGGATAATGCTGCTGAAATT AGTAACGGAAAGGAGGACAGTAAGAGCGAAAAGAAGCATAAGAAAAAGAAAAACAAGGACGCAGAGGAAGAATAA
Protein sequence (LotjaGi6g1v0350500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLSETKKKKHRSATKTHDGAATTEDDHHTKDEPQFMIKPEKLTPTIDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLK RPLPEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLH SDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVG AHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGL LRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDK HGKPNESTPQEWMRNLVLPAGGDSMIAGLAAAAPEADEAKKGIAVEEGKKDGDGEGRKRKKHESTDSPASVPAKKVKVDV VVDEGKVKVEVEGEKKEKKKKKKKDKENGEVASSDEEKAGKEKKKKHKVKVEDGSPDLDKSEKKKKKKKDKDAEDNAAEI SNGKEDSKSEKKHKKKKNKDAEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 5 | 583 | 579 | 5.3E-280 | – | |
| PANTHER | 5 | 583 | 579 | 5.3E-280 | ||
| MobiDBLite | 16 | 35 | 20 | - | – | |
| SMART | 48 | 106 | 59 | 4.5E-33 | ||
| SUPERFAMILY | 49 | 294 | 246 | 5.28E-77 | ||
| Pfam | 49 | 106 | 58 | 9.3E-31 | ||
| Gene3D | 51 | 380 | 330 | 2.7E-167 | – | |
| TIGRFAM | 56 | 381 | 326 | 2.3E-160 | ||
| Gene3D | 82 | 288 | 207 | 2.7E-167 | – | |
| CDD | 88 | 270 | 183 | 1.52568E-134 | – | |
| Pfam | 110 | 226 | 117 | 3.0E-19 | ||
| Pfam | 227 | 293 | 67 | 1.2E-21 | ||
| TIGRFAM | 291 | 368 | 78 | 4.4E-9 | ||
| ProSiteProfiles | 296 | 371 | 76 | 19.222 | ||
| SUPERFAMILY | 296 | 377 | 82 | 1.55E-23 | ||
| SMART | 297 | 371 | 75 | 1.8E-24 | ||
| Pfam | 297 | 369 | 73 | 1.1E-21 | ||
| MobiDBLite | 436 | 584 | 149 | - | – | |
| MobiDBLite | 439 | 468 | 30 | - | – | |
| MobiDBLite | 477 | 569 | 93 | - | – | |
| Coils | 488 | 508 | 21 | - | – | |
| Coils | 564 | 584 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi6g1v0350500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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