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Lj2g3v3413250.1

Overview

Field Value
Gene ID Lj2g3v3413250
Transcript ID Lj2g3v3413250.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description homoserine kinase-like [Glycine max] gi|359807161|ref|NP_001241610.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20861
41 377 337 8.90E-154 –
PANTHER
PTHR20861:SF1
41 377 337 8.90E-154 –
Gene3D
G3DSA:3.30.230.10
58 220 163 1.20E-41
IPR014721
SUPERFAMILY
SSF54211
58 220 163 8.35E-29
IPR020568
Hamap
MF_00384
59 370 312 29.275
IPR000870
TIGRFAM
TIGR00191
61 371 311 1.70E-62
IPR000870
PRINTS
PR00958
66 81 16 2.60E-29 –
Pfam
PF00288
143 208 66 6.70E-12
IPR006204
ProSitePatterns
PS00627
149 160 12 –
IPR006203
PRINTS
PR00958
156 171 16 2.60E-29 –
PRINTS
PR00958
195 208 14 2.60E-29 –
Gene3D
G3DSA:3.30.70.890
228 350 123 3.50E-31
IPR013750
SUPERFAMILY
SSF55060
230 339 110 1.60E-28
IPR013750
PRINTS
PR00958
235 252 18 2.60E-29 –
Pfam
PF08544
272 340 69 2.60E-09
IPR013750
PRINTS
PR00958
315 330 16 2.60E-29 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004413
Molecular function Homoserine kinase activity Catalysis of the reaction: L-homoserine + ATP = O-phospho-L-homoserine + ADP + 2 H(+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006566
Biological process Threonine metabolic process The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v3413250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3413250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.