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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013750
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 36 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.031s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0335759.1
n.a. PREDICTED: L-arabinokinase-like [Cicer arietinum] gi|502124500|ref|XP_004498554.1| chr0 175911389 175926316 +
3 domain predictions
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Lj0g3v0335759.2
n.a. PREDICTED: L-arabinokinase-like [Cicer arietinum] gi|502124500|ref|XP_004498554.1| chr0 175920710 175926316 +
3 domain predictions
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Lj0g3v0357339.1
n.a. PREDICTED: galactokinase-like [Glycine max] gi|356565073|ref|XP_003550769.1| chr0 188139972 188145393 -
4 domain predictions
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Lj1g3v0968900.1
n.a. PREDICTED: probable phosphomevalonate kinase-like [Cicer arietinum] gi|502136293|ref|XP_004502634.1| chr1 12265072 12272398 -
3 domain predictions
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Lj1g3v0984460.1
n.a. Phosphomevalonate kinase [Medicago truncatula] gi|357463877|ref|XP_003602220.1| chr1 12529700 12531852 -
2 domain predictions
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Lj1g3v4943880.1
n.a. PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| chr1 60108917 60112380 -
4 domain predictions
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Lj1g3v5038190.1
n.a. PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Cicer arietinum] gi|502114036|ref|XP_004494840.1| chr1 61684219 61700719 -
4 domain predictions
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Lj1g3v5038190.3
n.a. PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Cicer arietinum] gi|502114036|ref|XP_004494840.1| chr1 61694917 61696882 -
4 domain predictions
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Lj2g3v0920490.1
n.a. PREDICTED: glucuronokinase 1-like [Cicer arietinum] gi|502090342|ref|XP_004489197.1| chr2 14627159 14630772 +
4 domain predictions
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Lj2g3v3413250.1
n.a. homoserine kinase-like [Glycine max] gi|359807161|ref|NP_001241610.1| chr2 43126563 43129195 +
4 domain predictions
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Lj4g3v2263880.1
n.a. PREDICTED: galactokinase-like [Cicer arietinum] gi|502150796|ref|XP_004508128.1| chr4 31361898 31367834 -
4 domain predictions
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Lj4g3v3015190.1
n.a. Galactokinase [Medicago truncatula] gi|357520677|ref|XP_003630627.1| chr4 40375349 40384493 +
3 domain predictions
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Lj5g3v2240960.1
n.a. PREDICTED: diphosphomevalonate decarboxylase-like [Cicer arietinum] gi|502121015|ref|XP_004497159.1| chr5 32242930 32247786 -
3 domain predictions
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Lj6g3v1008180.1
n.a. PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like [Cicer arietinum] gi|502126787|ref|XP_004499437.1| chr6 11123384 11127831 -
3 domain predictions
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LotjaGi1g1v0000900.1
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 357693 361368 -
2 domain predictions
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LotjaGi1g1v0000900.2
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 357785 361328 -
2 domain predictions
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LotjaGi1g1v0000900.3
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 360062 361195 -
2 domain predictions
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LotjaGi1g1v0283600.1
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69065685 69076106 -
2 domain predictions
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LotjaGi1g1v0283600.2
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A1J7GGC5|A0A1J7GGC5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069563 69073708 -
2 domain predictions
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LotjaGi1g1v0283600.3
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069563 69075775 -
2 domain predictions
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LotjaGi1g1v0283600.4
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075661 -
2 domain predictions
 –
LotjaGi1g1v0283600.5
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075775 -
2 domain predictions
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LotjaGi1g1v0283600.6
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075775 -
2 domain predictions
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LotjaGi1g1v0283600.7
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075778 -
2 domain predictions
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LotjaGi1g1v0794600.1
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|G7L443|G7L443_MEDTR L-fucokinase/GDP-L-fucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0794600 LjG1.1_chr1 136570075 136575977 -
2 domain predictions
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LotjaGi1g1v0794600.2
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|G7L443|G7L443_MEDTR L-fucokinase/GDP-L-fucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0794600 LjG1.1_chr1 136570389 136575888 -
2 domain predictions
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LotjaGi1g1v0794600.3
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|G7L443|G7L443_MEDTR L-fucokinase/GDP-L-fucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0794600 LjG1.1_chr1 136570389 136575905 -
2 domain predictions
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LotjaGi1g1v0794600.4
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|G7L443|G7L443_MEDTR L-fucokinase/GDP-L-fucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0794600 LjG1.1_chr1 136570389 136575908 -
2 domain predictions
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LotjaGi1g1v0794600.5
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|G7L443|G7L443_MEDTR L-fucokinase/GDP-L-fucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0794600 LjG1.1_chr1 136570389 136576151 -
2 domain predictions
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LotjaGi2g1v0239500.1
n.a. Glucuronokinase 1; TAIR: AT3G01640.2 glucuronokinase G; Swiss-Prot: sp|Q93ZC9|GLAK1_ARATH Glucuronokinase 1; TrEMBL-Plants: tr|I3S7C0|I3S7C0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0239500 LjG1.1_chr2 70058456 70064445 -
2 domain predictions
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LotjaGi4g1v0332900.1
n.a. Galactokinase; TAIR: AT3G06580.1 Mevalonate/galactokinase family protein; Swiss-Prot: sp|Q9SEE5|GALK1_ARATH Galactokinase; TrEMBL-Plants: tr|I1MRT3|I1MRT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0332900 LjG1.1_chr4 71191781 71197357 +
2 domain predictions
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LotjaGi4g1v0440500.1
n.a. Galactokinase; TAIR: AT3G10700.1 galacturonic acid kinase; Swiss-Prot: sp|Q8VYG2|GALAK_ARATH Galacturonokinase; TrEMBL-Plants: tr|G7LJJ0|G7LJJ0_MEDTR Galactokinase; Found in the gene: LotjaGi4g1v0440500 LjG1.1_chr4 81405558 81415609 +
2 domain predictions
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LotjaGi6g1v0187700.1
n.a. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TAIR: AT2G26930.1 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase; Swiss-Prot: sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic; TrEMBL-Plants: tr|I3T103|I3T103_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0187700 LjG1.1_chr6 48171195 48180890 -
2 domain predictions
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LotjaGi6g1v0187700.2
n.a. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TAIR: AT2G26930.1 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase; Swiss-Prot: sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic; TrEMBL-Plants: tr|I3T103|I3T103_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0187700 LjG1.1_chr6 48176495 48180764 -
2 domain predictions
 –
LotjaGi6g1v0187700.3
n.a. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TAIR: AT2G26930.1 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase; Swiss-Prot: sp|P93841|ISPE_SOLLC 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic; TrEMBL-Plants: tr|I3T103|I3T103_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0187700 LjG1.1_chr6 48176853 48180623 -
2 domain predictions
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LotjaGi6g1v0260600.1
n.a. Galactokinase; TAIR: AT3G06580.1 Mevalonate/galactokinase family protein; Swiss-Prot: sp|Q9SEE5|GALK1_ARATH Galactokinase; TrEMBL-Plants: tr|I1MRT3|I1MRT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0260600 LjG1.1_chr6 57326429 57332243 +
2 domain predictions
 –