Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0019100 |
Transcript ID | LotjaGi1g1v0019100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|I1M6I6|I1M6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2372566..2379317) extracted from Lotus japonicus Gifu genome v1.2.
TTAACAACGTGCAAGGTTCGTGAATTGGCTGAAAAGGAGTCTGAAAATGGTGTCTTCAGACTGCTCCGAAGTGATGTTAC TCGATTCCTTACGACTATACTCATTGGCACAACGTATTATCCTTTCATTGGTTTCATTATTGAAATTATTATTTTTTCAA TTTGATTATAGATGTTTCTCATGTTACTATTCTGCTGTACAGTGTGGTCAATATTGGGGCAACTGCTCTGGTCACAGAAG CTGCAACTGCAATATTTGGTGAAGCTGGTGTTAGTGCAGCAACAGGAGTGATGACGGTATGATTTGATTTTCGTGTTCTA GTGTTTGTCAAAATCTTCTATTTCTTGGACATTAAAACATGCTGAAATGGTTTATGCATATATTTAATTGTCCAAAATTC AGATCAATTACCCACTTATTATGATTAATTTGGAACGTTTAATCTTTCAGTATTTGAACATGCTGTCCCATTAAACTTGC AAACTCCTGATGTGGTGGGAACAAAAATTTGAATTGTAAAGCTTGCTAGCTTTATCACCAGTTTGTGAAAAAGGTGCCTG AGCTAACCTTTGAGTGGGTACAAGGAGGGGGGGGGAGGTTGATATGATATTTTAATTTTATTTCTACCTTTAAAGGCTGT TCAGAGGTCAGCAGTTTACGCAGCATCATAGGAAATAGAATGTGCCTCAGTATCTCATTTTGTGCTACATTTTTACTTCT TTTCTTTTCTATAATATTTAGGATACGAGTATTATCTTATTAAATAGAATGGTTGATCAGATTGGTCACCGAACATTGCA CATTTGCACTGTGTTTTTTTGTTGACCCAGGGACATGTTGTCCGGGACCTCATGCATGACCTTTATTTTCTCTAAAATAT ATTGTCACAAATGCAACTCAACCAAGTTTGGTTTGATTAATTGAAGCTTAAAATTTCTTAGGATATCCTAGTCTCTTCGT CAGTACTTGGTTCCTAGGCTTATTGCCTTATCCCCAGCAAAAGCATACAACAGTAACAACATTGTGTGACTGTATCCTTT TGTGCTTCCTCCTTTACCTCCTCCTTTTGGTGCTCAGATGCTGACCTTTTGAACTGGAAAAAAGTTTTCTCCTCAAGTCT CCCTAAACTTTCAACAAAAGGTGTGCACTGTATGATGCAAAAGGTTTTTGGCTTGATTCAGTTTTTTTAATGAAAAAACT ATATTTTTTATTTTTTCAAAAAATTTCTTTTAAAAATTTCAATTTCGTTTGGTTCAACATATGAAATAAATCAAATTTGT GATTATTTTGAAAGGCTACTTTATGTAGTTTCTGGAAATAATTCGAAATTAAAAGTTGTTTTCATAATTGTAACCAAATG AAAATTAACTTCTGCTTTATATAAAATCTTTGGTAAATAAATCACTTACTTAAAAGCTTACGAAACAGGCCCTTATTTAT CCTCTTAATTTTCATGCATGCTTTAATATCTTTTTATTAGTTTCTGATTATGATCTACTTTTTTTAAAGCAAAATCAGGA TGCTATGTTTTACATAATTTCATAATTCTATGTTTCCTCTCCCTCACACTGCCAGTGTAATTTGTGCAGATTTATAAGTT TACATCAAAGCTTATTTCTCATAATTTCTGATTTTCCTTTTCTCTCCATAATCAAACAAGGTTGTCATTTTGCTTCTCAC GGAAATTACTCCAAAAAGTATAGCGGTTCATAATGCCACTGAGGTGGCTCGATTTGTGGTAAGTTTTAAATTTCTTCCTT TTCTTTTATATTATTTGGAAAAAGAAATGATGCTGAGTAAAGCATTTTTGATTATTTTCATGTCATTCATATTTACGTGA TGTTGCTTCAACTTCGTTTTGTAACAAATATTGATATTGATTTCAATGCCTCTAGGTCAGGCCAGTGGCATGGCTTTCCC TGGTTTTGTATCCTGTAGGGAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCTTAAAGGGAAGAAGG TCTGCTTAATCTTCCCTTATCATATTTAACATACTGCTTTTGATTCTTTATGAATGTTTTGTGAAATATTATTACAATCT GTGATGCAAACTGTCCATTTTCTAATGTTAAGTTCTTGCCTAGAAGTTATGTCAAATAGAACAAATGAAGAATTGAAGTA AATTTATTGATCATGAGTGGTTTGTATGTGGTCTATTTTCTAATGTGAAGTTTTAAGATGTTTACTGTAAATATGTCGAT AATATTTATACGGAAAGTGGCACCTGATTGTTGAAGCATTGAATTTGTGATGTTCTCATTGATTTATTAGAAATTCAATA CTAAAGTCACTGTTTTCTTTGCCAGTGAGCCATATGTAACTGAAGAGGAGCTTAAATTGATGCTAAGGGGTGCAGAATTA AGTGGGGCAATAGAGGAAGAAGAACAGGTGATGAATATTGGGTTTAACATTCTATTAGTCGCATCATTTATCTGTGTTTA AATCGTAAATAGAATTTTATAGATATGCTTCATAATCATCACAAAATTGTGTCTTGTTTGAATGACATTATTGTTTTTAA CAAAACGGGAACAGATTCATCTGAATAACATGAATAGATTTCAATTTTCCACCTGGAAATACACCTCTCTTTCTTTTAGT AATAATTAGATATATTTATTGTTGTGATTTTTCATAACACTTACAAAAGCCCTATCTGTATATGTTTTTTAGTCTATTTT AAATTGTTTGTTTTCTGATTAGTATCTGAATATGTATATTACAGGATATGATTGAAAATGTGTTGGAGATAAAAGATACA CATGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCCAGTTCAAGCCTTGTAGATTTTCATCACTT GTGGGTCACACATCAATATTCAAGGTATTTAAAGATTCCCTTGCTTCAACTTATATATATTTTTTTTTCCAATGCACTAA CTGCATCAAGACTTGTTTCCCAGGGTACCTGTTTTTGAGCAACGCGTTGATAATATAATGGGTATAGCATATGCAATGGA TCTGCTTGATTATGTTCAGAAGGTTGGGAGATTTTATTTCTCTTATCTATTATGAATTATAAGTGCTTTACCTATTAATT GCATCCTCCAATCTCATAGTTTGCAGAATTATTATCTGTTTGATTTTGAAGGGCGAGTTGCTAGAAAGTACAACAGTTGG AGATATGGCTCACAAGCCTGCATATTTTGTACCTGGTAACTTATTCTTAATCTTGGATTCACCTTTGTTTGTGTAATTAC TTACTGTATGGCTGGTATTGTATTGTTGAATCATTTGTTATAGCAACAGATTTATATCTGTTTAACTTATTGCAGAATGT TGGAGGAATAAATTCTTATGACTGATTTTGCAGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCCGAATCAGGAAG GTTCACATGGCTGTCGTTCTTAATGAATACGGTGGAACTGTGGGAGTATGTATACCATACCAGAATACAACCAACTCAGA GCTCTTTGTCTGCCATAAATATGGATATATGAAGCTCTAAATCTATGATTTTCTGATGATATATATACCATGCTAATTAC AACCATTGACCCGAATGAAATAGAAAGATATCAATTAGAACATGCCATAAACCTATCACTATCAGTGTCTGTTTCTTTCG ACATCTTCTGTAATTATATACCAACCTCTTTTTTTAGTTATGTTAATTTGAAAAAGCCAGTTGAATCAACATTCAAATCA TACCAGTCATGAACTATTGCTAGAATTTTCATAAATAATCCGGGAAATAAATTAGCTTTGTATTAGTATAGATACACCCT TTGAATTTATTTTGACTATAGTTTTCACGGTCATCCTTTCATGTGCTTGTTACATGCTTTCACCAACAACTTAAGTTTTT GGGATAGTTGGTGCATGAGAGAGAGGCTTACTTCTTTAGTGAAACTGAAGTTTAGAAGATTGTTACTACACTCTTCAAGT CTTCTGAAATCCAGTCTGTGTGATCTGCATATAAGTTGTAACTATTTTCACAAGGTGATGTATTAAATCTAGATGTCTCA TTTATATTTCCATTTAACAGGTTGTAACTCTTGAAGATGTTGTGGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGAC TCAAAGGTAAAGGCTAAGTATAAATATTTGTATCTTGAATTTGTTTCTTTCAACTGCATTTTTAAATAGCTGAAACAAAG CATATATTGAATTCGTCTTTATTCTATTTCAGCCGAAAAAGAAAAACAAAGGGAAAAAATATCGGCACTCTGCACTCTTT GTTCAACAGTAGTTTTGTAATGAATATTTATATTTATTTTGTATGTTCTTTGTATACCTTGCTCATTTGTTTTTGTTGCC TTATTTTAATTCTAATTGCTTAGATTCTGACAAGTGACAACTCTACTATTTTTAGTAGCCTTACTTAAAGTCCATCTTGT CTTTTAGGCTCTCTATTTGCATTCAGGACTTCCAACTTTAACATTGGAGGAGTTATGGCTTCAGATTGATAAAATTCATA GCTGTTAAAAAGGTTCATATTTTTCAGAGCACAACAATTTGTGCTGAAATTCATAGTGTAGCAACATAATATTGTATTGT TCAGAATGGCAAGCTGTAATGTAACAGTATCTCCAGAAATAAAGGAAGAGATTAGACTATTGAGATGGATCAATGTTTAA TTATATACAATCCAAGAGCATGTTCTATGTTACTTCAGAAGCAGGCGTGGTCTGTTGGATAAAACATTAAAAATGAAATG CAGTTGTTTGTACATCTTAGGCATGTTCTATGTTCAAATACAAACTCTTCAAAATAGGAGTATAAATATGTGAGTATGAT GTGTAAACGAGAGGGGAACAAGCTATGATGTGTAAAAGTGATAAGGATGCTTGTAAGAACGGTTTTGCAGGAATGCTTGT GCTACTCTGTGATTCCTGCAAATATAATGCCCATGATATGTTCATAACGTTTGACTGTTTTGCTATTAGTGGCTGATTAT GTATTTCTGAATATAAAAATATTTTATCTGTTATGTTTTGTAGCCTTTGATTTTTTATTTTGGCAACTATTTGCTACTTT AATGATTGACATGCTGATTTTTCAATAACCTTTCTACAATCTTTTGGGGTTATTCAACAGGAGGAGATTCAGAAAAAGAC CGGCTACGTAGTAATGCGAGCAGAGGGTATATTTGACGTGGATGCGAACACATCCATTGATCAGCTCTCTGATGATTTGA ACATCAAGATGCCAGAGGTCACCACTTTTTCATATACGCACCTAACATATTGGTCTTCTCATGGCAGTACTTGTAATCAC TGTCAAGAATCTTTTATTAGTTGCATGGAGTTAGTATGATTTATTTTGTTGCACCACGTCAGTTTTTCCTTTTAATATAT ATATATATATATATATATATATATATATATAATTATATAATTATATACTATCCAAGAGCATGATTTGTCATTAGTTCTAG AACCAATAAATAAGTTGTTTGTGAATTTGTCCTTCAAAACCATTGTAGCTTTGTAATGTAGAGTTGTAGACGGTCAGCAT CTTTGCATCTCAATACATTCTTGTGCTAGCTTACAATGCTATAAGTCTGTTGAAGAAGTTCGGGCTTCTTAATAGTAGGT TGCGTCTGCAATTCCAGGGTATTCAATATGAGACAGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATCCCAAGGACA GGCGAGTCCATCAAAGTTGTACTTGAAAGGGAAGATGAAGATGATAACGAAGAATCTGATGCTGACCGCCAGGATCAGAA AGAGAAGAACCAGATTTTCAAACTTGAGGTAATCAGTTTGTCATTCTTCGCCAGTATCTAAAATTTGTCACATATGATAG TCTTATTTATTTTAGCTTATGTATCCAAAAGTTGGAGCCTGGAGAGAATGGTTAACATCACTAATATCAGAAAGTGTAAT GATAGGTAACATTTGACACACAAATAGAATGATAGGTACCACTTTTTCCCTATGTTCTGTTCTGCTTACATAGTTACCCG CACCAAACATATAACAGAATTCATATATTCTGTTCTGTCCTATTCAATCTTGTTTACAGAACACTCCCATATTTTAACAC ACTGACTAAGTGACCATGCATTAATGCATATACCTAATTTTCAATTTTGTTACTCCACTATTACTAATGCTACATTAAAG ACATCAATGTGATGTTCCTTGAGAAGCATGTTCAACAAATTTGTGCTTTTGATTTCTGTTTTTTGAATTTATGGTTAAGG AAGCAACGTCATCTTATTAGCTCATCAATATCGAGTTTTTCCAAATTTATGCTATTTTGTTTTTTGTTTGCAAAGTCCTT GTGCCTTTTCAACTCGCATAAGCATCAACTGTTTATTTTTAAACTTGCATAAAGTAATAAAGCTGAATCTAGACCTTCTC CTTTGTCTTCGGTGCAGATACTAGCAGGAAATGCCAGAAAAGTGAGCGCTGTTCGGTTTGAAAGGGTAAATAATGGGGAT GAAATGTCGGAGACTAAAGAAGTCACTCGCTTGGTCCCGAAAATCATGAAAAGAAGAAAATGGAGCAGTGATGAGGACTC AGAGGATGATGCAGAATATGATGGAGAAGCTGCATTGGCAAAGAGACTACATGATGATGCAATTTCTAGTGAATTTGTAG TTGATCAGGAAAGTTCTCATACAAAAAGTTGA
CDS sequence (LotjaGi1g1v0019100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGTTGTCATTTTGCTTCTCACGGAAATTACTCCAAAAAGTATAGCGGTTCATAATGCCACTGAGGTGGCTCGATT TGTGGTCAGGCCAGTGGCATGGCTTTCCCTGGTTTTGTATCCTGTAGGGAGAATTGTTACTTATCTTTCAATGGGGATGC TGAAATTGCTTGGCTTAAAGGGAAGAAGTGAGCCATATGTAACTGAAGAGGAGCTTAAATTGATGCTAAGGGGTGCAGAA TTAAGTGGGGCAATAGAGGAAGAAGAACAGGATATGATTGAAAATGTGTTGGAGATAAAAGATACACATGTCAGAGAGGT TATGACACCTCTTGTTGATGTTGTTGCAATTGATGCCAGTTCAAGCCTTGTAGATTTTCATCACTTGTGGGTCACACATC AATATTCAAGGGTACCTGTTTTTGAGCAACGCGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTTGATTAT GTTCAGAAGGGCGAGTTGCTAGAAAGTACAACAGTTGGAGATATGGCTCACAAGCCTGCATATTTTGTACCTGATTCAAT GTCTGTTTGGAATCTTCTTAGAGAGTTCCGAATCAGGAAGGTTCACATGGCTGTCGTTCTTAATGAATACGGTGGAACTG TGGGAGTTGTAACTCTTGAAGATGTTGTGGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGAGGAGATT CAGAAAAAGACCGGCTACGTAGTAATGCGAGCAGAGGGTATATTTGACGTGGATGCGAACACATCCATTGATCAGCTCTC TGATGATTTGAACATCAAGATGCCAGAGGGTATTCAATATGAGACAGTATCAGGCTTTGTGTGTGAAGCATTTGGATACA TCCCAAGGACAGGCGAGTCCATCAAAGTTGTACTTGAAAGGGAAGATGAAGATGATAACGAAGAATCTGATGCTGACCGC CAGGATCAGAAAGAGAAGAACCAGATTTTCAAACTTGAGATACTAGCAGGAAATGCCAGAAAAGTGAGCGCTGTTCGGTT TGAAAGGGTAAATAATGGGGATGAAATGTCGGAGACTAAAGAAGTCACTCGCTTGGTCCCGAAAATCATGAAAAGAAGAA AATGGAGCAGTGATGAGGACTCAGAGGATGATGCAGAATATGATGGAGAAGCTGCATTGGCAAAGAGACTACATGATGAT GCAATTTCTAGTGAATTTGTAGTTGATCAGGAAAGTTCTCATACAAAAAGTTGA
Protein sequence (LotjaGi1g1v0019100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVVILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGRSEPYVTEEELKLMLRGAE LSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASSSLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDY VQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDENDSKEEI QKKTGYVVMRAEGIFDVDANTSIDQLSDDLNIKMPEGIQYETVSGFVCEAFGYIPRTGESIKVVLEREDEDDNEESDADR QDQKEKNQIFKLEILAGNARKVSAVRFERVNNGDEMSETKEVTRLVPKIMKRRKWSSDEDSEDDAEYDGEAALAKRLHDD AISSEFVVDQESSHTKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 17 | 17 | - | – | |
ProSiteProfiles | 1 | 89 | 89 | 23.945 | ||
Pfam | 1 | 89 | 89 | 2.1E-19 | ||
PANTHER | 1 | 380 | 380 | 2.5E-210 | – | |
Phobius | 1 | 1 | 1 | - | – | |
Phobius | 1 | 17 | 17 | - | – | |
PANTHER | 1 | 380 | 380 | 2.5E-210 | – | |
Phobius | 2 | 9 | 8 | - | – | |
Phobius | 10 | 17 | 8 | - | – | |
Phobius | 18 | 32 | 15 | - | – | |
Phobius | 33 | 54 | 22 | - | – | |
Phobius | 55 | 417 | 363 | - | – | |
Gene3D | 83 | 238 | 156 | 1.1E-49 | – | |
SUPERFAMILY | 91 | 230 | 140 | 1.01E-32 | – | |
CDD | 103 | 224 | 122 | 1.06202E-42 | – | |
Pfam | 104 | 162 | 59 | 5.4E-4 | ||
ProSiteProfiles | 108 | 169 | 62 | 9.139 | ||
Pfam | 172 | 227 | 56 | 1.1E-6 | ||
ProSiteProfiles | 175 | 233 | 59 | 11.527 | ||
Gene3D | 245 | 337 | 93 | 1.4E-15 | ||
SUPERFAMILY | 246 | 355 | 110 | 1.88E-13 | ||
SMART | 248 | 351 | 104 | 2.0E-12 | ||
Pfam | 249 | 350 | 102 | 4.7E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. |
Expression pattern of LotjaGi1g1v0019100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…