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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0339700 |
| Transcript ID | LotjaGi1g1v0339700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp|Q8RWT8|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80082329..80085425) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAGGAAAAATAGAACCATCTGAGCGCCAGAGATTAATTGAAGAAGGTGCTCTTGGCACAGACCTTCACTCATCATG CTTCGCTTTGGTTTTCTTTGATTAAATTTCTTAAAACTGTCACATTTTGTCTGCAGGGAAGAAATTGAAAGAGGGGCTTA TTGCTTTGGAAGAAGACCTGGTGAAGCTTAAAGATGAGCTTCAACAGGAAGCGCAGTCTATACCAAATATTACTCATCCT GATGTTCCGATAGGAGGGGAGGATTGTTCCACTATAATAAAGATGGTATATCAATTATCACAACTCTCTTCATTTTTTCT TCTAGAGTAAAAAGGTTGGTTGTTGGTCTTGTTCAGGCATCAATTTCTTTTGCTTAAATATTAATGTATCATGTGACTTT TTAGGTTGGCAGCGCTCCCAAATTTAGCTTTCCTGTCAAAGATCATCTCCAACTGGGAAAGGATCTTGATCTCTTTGATT TTGATGCTGCTGCAGAGGTATGCTATGATTAATTTAAGGCATTAAAGAATCATGTATTTGAAGCTTGGCTATTATTAGTG TCATTTTGAGGTGTAGGTTAATAGTATATGGTGTTAAAGGTTAATAGTCATTTTTATCCTGACTCGGTGTTGGAATTTAT TTACTTAGCACTCTTATTATTTTCTTGGAAGTGAAGCGGGCCTTGGAGGTGTCATCTCCTCTTACATGAAAGTAACCAAG GATGATTTGTATATGTCATTAGATTGAAGAATTCTTGAACTTTGCAATTATGAAATGCTTCATGTCTGTCGCTGTTCTTG TGTCCGATATTGTTGGAAGACCTCATTCTAAGTGCTAACTTGGTAGTAGCTTGTTCCTTTTTTTTTTAAATCATGTTGTC ATGTTGACGTTTGGATCTTAAAAGGAGCAAGGATATAATTGGCATGTGACTGTACTTTCTCAGATGAATCTAACATGCTG CTTCACAGGTTAGTGGGTCAAAGTTCTACTACCTGAAAAATGAAGCGGTTTTGTTAGAGATGGCTCTTTTAAATTGGACA CTCTCAGAAGTGATGAAAAGAGGCTTTACTCCTATAACAACTCCTGAAATTGTACGGTCCTCTGTTGTTGAAAAATGTGG GTTCCAACCTCGTGCGGATAATACCCAGGTTTGTGAGTGAATATTTATTTGGCATTTAATTCTTTATCACTATGTGCTAT TAAACTATTCTTCGGCTTCATGGTCATGGACATAGGATAGTAAGATACATAGCTGATGACAAACATGTGGCAACCATTTT AGCTGAGACAGTTTACTTGCTGTCAGAAGAACATTTATCTTCTAGAGTTCTAGTCCTTCCATGAGTTCCATCTTCTTTTA TATTTTTCAAGCCATGAAACTTATATATCGGTTAGTCTTGTACTAAGGCCCAACCTTGTTTCATGATGCAAAGTATTGCA ACATCATCAAGTTTTCCCTATAAGTCCTTCAGTTTCATGTTTTTTAGTTTGATGATTGAAGTTCATAGCTTCTGTTGATG TTTCATTATTTCATACCAACATCAAACAGATTTATTCCATCGAAGACAGTGACCAATGCCTTATTGGCACTGCAGAGATT CCTGTTGGGGGCCTTCATATGGATTCTATTCTTGCTGACTCATTGTTACCCTTAAAATATGTGGCATTTTCTCATTGTTT CCGTACCGAGGCAGGTGCTGCTGGCGCTGCAACAAGGTAATTAATTAACTGTAGAGCTTATTTTTTCCTTTCATGTCCCT AGCTATTGATTTGACCAGAGATTAAATCGTTAGTAATATCCAAACTTGTAATATAGGGGGGAGTTTAAACCCTTAAAATA CTGCTTTGTTGCATATGTTGGCTAAATTTATTTAACCAGTTGAAGTTCCTATTTTCAAGTCCCATCCTACATGCCAATTT TAATGTTCATAACTATTTAGTTCTTCCAAATTTTTTGATATTGATCAATACTGAACAGGGGTCTTTATCGAGTTCACCAG TTCAGCAAGGTTGAAATGTTTGTTTTTTGCCGTCCGGAAGAGAGTGAATATTATCATCAAGAGCTCATTAAAATTGAAGA AGACATCTTCTCATCCCTTGGGTTACATTTTAAGTGAGACTTATTACTTTGTACATAGTACATCCTTCCTTCATAATTTA ACATGATCTCATTACTGAGTTTATTATAACTGTGGGTTTTTCTGCAGAATTTTGGATATGGCTTCTGAAGATTTAGGTGC ACCCGCTTATCGTAAATCCGATGTGGAGGCATGGATGCCAGGTTTAGAACGGTTTGGTGAGGTACTGCAACAACTCTTTC CCTTTCTTTCTCTTGAGACACATCTGCAAGCTTTGTTTGCTATGCCCCTTGGGCTGAGATTACTGCTTTCTCAATGTGAT TATTAAATCATCTAAATGAATCACTGTGGCTGCATGCACTAGGGGAACTTCATTTGGTTTTTGTAACTTGTTAATTGTGA TTACTGAAGCTTAACCATCCTTGAAAATCCAACTTACTGCACTGTTATTCCCTTGCAAAAGTCATGTGGCTTTCAATGTA TAGCATGTTTAAAGCAGTTTAATTTCTCCTAGAGAAGCTACTCATAGAACTTAATTAAAAAATTACGGCGAAGCCAAAAT TATGGTGGACAGAAGGAAAAGCTAAATGAAGTTGCTTCTGTCCACGACCCTTCACTGTGATTTTCTATTGTGTATTTAAA CACGCACGAAGGATTTCTAAACATGCTTTGCTGAGCCCTTATTTCCTTGTATGGTTGTTATTATGACAGATCTCAAGCGC ATCAAATTGCACAGACTATCAGAGCCGTCGGTTGGGAATCCGGTATCGTCCATCAGAAGCACTTGCACCTGGTCCAAAAA AATCTAAAGGCAACCTTGCTCCACCACAGTTTGTCCACACATTAAATGCAACAGCATGTGCAGTACCGCGGATGATTATA TGCTTACTTGAGAATTACCAACAAGAAGATGGGTCTGTTCTTATCCCTGAGCCCTTGAGGCCTTTCATGGGGGGCCTTAA CATTATAGCTAGAAAATCATAATATAATATATCATCATAACATTTGTTTGCATTTGA
CDS sequence (LotjaGi1g1v0339700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAAAAATAGAACCATCTGAGCGCCAGAGATTAATTGAAGAAGGGAAGAAATTGAAAGAGGGGCTTATTGCTTT GGAAGAAGACCTGGTGAAGCTTAAAGATGAGCTTCAACAGGAAGCGCAGTCTATACCAAATATTACTCATCCTGATGTTC CGATAGGAGGGGAGGATTGTTCCACTATAATAAAGATGGTTGGCAGCGCTCCCAAATTTAGCTTTCCTGTCAAAGATCAT CTCCAACTGGGAAAGGATCTTGATCTCTTTGATTTTGATGCTGCTGCAGAGGTTAGTGGGTCAAAGTTCTACTACCTGAA AAATGAAGCGGTTTTGTTAGAGATGGCTCTTTTAAATTGGACACTCTCAGAAGTGATGAAAAGAGGCTTTACTCCTATAA CAACTCCTGAAATTGTACGGTCCTCTGTTGTTGAAAAATGTGGGTTCCAACCTCGTGCGGATAATACCCAGATTTATTCC ATCGAAGACAGTGACCAATGCCTTATTGGCACTGCAGAGATTCCTGTTGGGGGCCTTCATATGGATTCTATTCTTGCTGA CTCATTGTTACCCTTAAAATATGTGGCATTTTCTCATTGTTTCCGTACCGAGGCAGGTGCTGCTGGCGCTGCAACAAGGG GTCTTTATCGAGTTCACCAGTTCAGCAAGGTTGAAATGTTTGTTTTTTGCCGTCCGGAAGAGAGTGAATATTATCATCAA GAGCTCATTAAAATTGAAGAAGACATCTTCTCATCCCTTGGGTTACATTTTAAAATTTTGGATATGGCTTCTGAAGATTT AGGTGCACCCGCTTATCGTAAATCCGATGTGGAGGCATGGATGCCAGGTTTAGAACGGTTTGGTGAGATCTCAAGCGCAT CAAATTGCACAGACTATCAGAGCCGTCGGTTGGGAATCCGGTATCGTCCATCAGAAGCACTTGCACCTGGTCCAAAAAAA TCTAAAGGCAACCTTGCTCCACCACAGTTTGTCCACACATTAAATGCAACAGCATGTGCAGTACCGCGGATGATTATATG CTTACTTGAGAATTACCAACAAGAAGATGGGTCTGTTCTTATCCCTGAGCCCTTGAGGCCTTTCATGGGGGGCCTTAACA TTATAGCTAGAAAATCATAA
Protein sequence (LotjaGi1g1v0339700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGKIEPSERQRLIEEGKKLKEGLIALEEDLVKLKDELQQEAQSIPNITHPDVPIGGEDCSTIIKMVGSAPKFSFPVKDH LQLGKDLDLFDFDAAAEVSGSKFYYLKNEAVLLEMALLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYS IEDSDQCLIGTAEIPVGGLHMDSILADSLLPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPEESEYYHQ ELIKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSEALAPGPKK SKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLRPFMGGLNIIARKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 377 | 377 | 8.6E-199 | – | |
| PIRSF | 1 | 378 | 378 | 7.2E-128 | ||
| PANTHER | 1 | 377 | 377 | 8.6E-199 | ||
| SUPERFAMILY | 6 | 54 | 49 | 2.46E-8 | ||
| Coils | 10 | 44 | 35 | - | – | |
| TIGRFAM | 10 | 369 | 360 | 1.6E-122 | ||
| Gene3D | 47 | 379 | 333 | 1.5E-139 | – | |
| SUPERFAMILY | 59 | 370 | 312 | 1.07E-78 | – | |
| CDD | 63 | 369 | 307 | 4.01305E-168 | ||
| ProSiteProfiles | 79 | 362 | 284 | 21.701 | ||
| Pfam | 163 | 352 | 190 | 1.5E-27 | ||
| PRINTS | 204 | 216 | 13 | 1.3E-22 | ||
| PRINTS | 216 | 229 | 14 | 1.3E-22 | ||
| PRINTS | 256 | 269 | 14 | 1.3E-22 | ||
| PRINTS | 273 | 289 | 17 | 1.3E-22 | ||
| PRINTS | 291 | 307 | 17 | 1.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Serine-tRNA ligase activity | Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Seryl-tRNA aminoacylation | The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA. |
Expression pattern of LotjaGi1g1v0339700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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