Domain Predictions — View

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TIGR00414

Source: TIGRFAM

Description

serS: serine--tRNA ligase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000166 View details of GO:0000166 AmiGO InterPro QuickGO	Molecular function	Nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.	Subterm of GO:0036094 GO:1901265
GO:0004828 View details of GO:0004828 AmiGO InterPro QuickGO	Molecular function	Serine-tRNA ligase activity	Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).	Subterm of GO:0004812
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639
GO:0006434 View details of GO:0006434 AmiGO InterPro QuickGO	Biological process	Seryl-tRNA aminoacylation	The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA.	Subterm of GO:0006418

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1514800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Seryl-tRNA synthetase [Medicago truncatula] gi\|357465107\|ref\|XP_003602835.1\|	Domains Coil G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR033729 PF00587 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF0 SSF46589 SSF55681 TIGR00414 cd00770	17
Lj1g3v1514800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Seryl-tRNA synthetase [Medicago truncatula] gi\|357465105\|ref\|XP_003602834.1\|	Domains Coil G3DSA:1.10.287.40 G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR015866 IPR033729 PF00587 PF02403 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF0 SSF46589 SSF55681 TIGR00414 cd00770 mobidb-lite	21
Lj5g3v1494610.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi\|356576773\|ref\|XP_003556504.1\|	Domains Coil G3DSA:1.10.287.40 G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR015866 IPR033729 PF00587 PF02403 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF7 SSF46589 SSF55681 TIGR00414 cd00770	20
Lj5g3v1494610.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi\|356576773\|ref\|XP_003556504.1\|	Domains Coil G3DSA:1.10.287.40 G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR015866 IPR033729 PF00587 PF02403 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF7 SSF46589 SSF55681 TIGR00414 cd00770	20
LotjaGi1g1v0339700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine--tRNA ligase; TAIR: AT1G11870.2 Seryl-tRNA synthetase; Swiss-Prot: sp\|Q8RWT8\|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|G7J3Z0\|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700	Domains Coil G3DSA:1.10.287.40 G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR015866 IPR033729 IPR042103 PF00587 PF02403 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF0 SSF46589 SSF55681 TIGR00414 cd00770 mobidb-lite	22
LotjaGi1g1v0339700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp\|Q8RWT8\|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|G7J3Z0\|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700	Domains Coil G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR033729 PF00587 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF0 SSF46589 SSF55681 TIGR00414 cd00770	17
LotjaGi1g1v0339700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine--tRNA ligase; TAIR: AT1G11870.1 Seryl-tRNA synthetase; Swiss-Prot: sp\|Q8RWT8\|SYSM_ARATH Serine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|G7J3Z0\|G7J3Z0_MEDTR Seryl-tRNA synthetase/serine-tRNA ligase; Found in the gene: LotjaGi1g1v0339700	Domains Coil G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR033729 PF00587 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF0 SSF46589 SSF55681 TIGR00414 cd00770	17
LotjaGi5g1v0220300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine--tRNA ligase; TAIR: AT5G27470.1 seryl-tRNA synthetase / serine-tRNA ligase; Swiss-Prot: sp\|O81983\|SYS_HELAN Serine--tRNA ligase; TrEMBL-Plants: tr\|A0A0B2Q4B0\|A0A0B2Q4B0_GLYSO Serine--tRNA ligase; Found in the gene: LotjaGi5g1v0220300	Domains Coil G3DSA:1.10.287.40 G3DSA:3.30.930.10 IPR002314 IPR002317 IPR006195 IPR010978 IPR015866 IPR033729 IPR042103 PF00587 PF02403 PIRSF001529 PR00981 PS50862 PTHR11778 PTHR11778:SF16 SSF46589 SSF55681 TIGR00414 cd00770	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00770	CDD	1	12.50