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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0661700 |
| Transcript ID | LotjaGi1g1v0661700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|G7L5Y2|G7L5Y2_MEDTR General transcription factor IIH subunit 2; Found in the gene: LotjaGi1g1v0661700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122269492..122272565) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATAATATTTCTGGAAGACCACTTAATGGAGAAGTAGAAGATGATGATGAAGATGAAGCTAATGGTGGAGGCCTTGA AGCCTGGGAGAGAACTTATGCTGAAGATAGATCATGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAG ATAATACAGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCATCCAAGGCAGCTACTGCACGAATTCAG AAGGGTCTTATACGATACCTTTACATTGTTGTAGACCTGTCCAAGGTATTTGATTGATTACTTTAGGGTTTCTGTGGTTG CTTCTGAGTTCCCTTTGACATGGAGCTTTGCTTTGATTGCTTGAAATTTGGATTCCAATTGAGGATGGGGCGTATGTGTT AAAACTCTTCATGAATAAACTTGTGAAAGTTGAATTGACTTAGTTTTCTCGGATGGCTTTTCTACCAATATCTGTAATTC CTTTCATGGGCCCAAGAAACCTTTACTTTTTAGATTTTCATCTTTTTCCTTTACTAATGCATTCATATTTGTTCAATAAA TTAGCACTTAAAACTTCAAATCAACTAGATTGTTCAGAAGCACACATCAATGTCAAACTGGTATTTCCATGCTGAACAGT TCTTATCCTGAAAAAGATATTAGGAATTTCTTATGGCCCTACAACTACAAGTATCTTATTCATCTTGTGATTGAGATAAT GTTTATATTAGAAATGAAGTTACTGGGAGAAATATATAAATATGGACTACAAAAATGTTGAATCTTGCAGTTTGATCTAT ATCCTGTTAATCTTTTTCCCTTGTATTTATAACTCTTTCTGTCATCATGTTAAGGCAGCTGCTGAGACGGACTTTCGACC AAGTAGGATGGCTGTGATAGGGAGACTGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTG GCCTGGTTACCATAAAAGATGGGGTTGCTCATTGCTTAACAGATCTTGGTGGCAGTCCTGAGTCCCACATCAAAGCTTTG ACGGGTAAACTGGAGTGCTCAGGTGACGCATCCCTACAAAACGCACTAGAGCTTGTTGTTGGCTATCTAAATCAAATCCC ATCATATGGTCATCGTGAAGTTCTGATCTTATACTCGGCTCTAAGTACATGTGATCCTGGTGATCTCATGGAAACCATCC AGAAATGCAGAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAACATATCTGCCAA GAAACAGGAGGAACTTATTCTGTTGCACTAGATGAGGTTAGTTTTTTGATTATGATTGAAACCATGTAGATGCAGTACAA ATTCAAATTATCCGTGTCTGTAAAAGGGATTTGAGTTTTTACAATCATGCAACCTTAATCTGAATATACTTTTAGAATAT TGTTGATCAACTCTAAATGTGTTTGTTCCAAATGCTTGTAAATTTATGAATCTATACATTGATACAGATATTTACTTCCC ATGCAGTCCCACTTTAAAGAGTTAGTTCTAGAGCATGCTCCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAACTT AATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCAGTTGCAATTTGTACTTGTCATGAAGAGGCTAAGACCGGAG GGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGTCGCGTCTGTGGATTAACCCTTATT TCTTCACCCCATTTGGCAAGGTCATATCATCATCTCTTTCCTATAGTGCCATTTGATGAAATCTCTCCATCGTCTCGAAA TGATCCAAGCCACAGTTTCTCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGTAAGTTTGTGCAGAAAA GTTGTCAAGGTTGAATTCCTTCATACATTTATGATTTAGCAATTTGCAATTTTATCATGTTGACCAACATGCTATGTCAA ACATAGATGGGTTAGTTTAAGGTTGAAATATTATTAAAAATAGTGAATGGTCTAATTTCAGAAGTTATTCCCTGAGATTT TATCCTTAAAGCCTTATAAAAAATCATAAATGGGTTAATTTCAGTGTCTTATTGCCTATCAATATTTATACGTTTGAGAT GTTATGTTAAGTTTTTTGTTGTTGTTTGAGATGTTATGTTAGCTGTAGTCAAAGAGATTAGCAATAGTCCTATTGAGATT TGAGAGATGGGCGGGCTTTCATTTTGTAAATACATATCTTGGTCTTGGTAACTTAATACAACTTCCATTGGGAAGCTTAA GCATTAAAAAGAGAGGCGCTAATGTCGCATCTGTGATTAGCATCCCTGTTAACCACTTTGAACGTGGTGGCGTACCATTA CATATGAAGTACATACTATGGTTTTTATTAGCAATCAAACTATTATGCAAAATGCTAATCATATAGTGTCTTACTGCTAG TATCTTGTCTATCAACTGTGATATCACGTACATGATAATAGGGAATAGTTTTTGCCAGACATAATTGCCTTAGCTTTCTT GTCATCATGATGATGATGCATCTATACTTTCAAGCTAGAGTTGATGGTAAAGTTATGCAATTGATCCCAAATTTGAGGAA TATAAAACTATGGCTGCTTAAGTAACATGTGGACAATGGTGGATTCGGATTACGGTGTGTATGCTTCAATCATACTGATT ACAATTGTCAAATAATTTTAAGTTTTTGAAGGAACATGATTTTAAATGACTGGCTGTGGTCATATTTCCGTGAATATACG GCAGATGGCTCCTTTGGGTTAAGGGTATCTATTTTTTATGTGATTAGTTTTTTCCTATATGTAGTATAGCATATATAATA TGTTCTTGCTTTATTTTCCTACAACCCCATTGACTGGTTGTGGAACAGGAAACGTGCCTGGAATTTCGGTTACTTGCCCA AAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCATGAGAGCTTACATAATTGCCCAGGCTGTGAGAGTTT CAGGCATTCTACGTCAGTAACTGCTGCCCAATGA
CDS sequence (LotjaGi1g1v0661700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAATATTTCTGGAAGACCACTTAATGGAGAAGTAGAAGATGATGATGAAGATGAAGCTAATGGTGGAGGCCTTGA AGCCTGGGAGAGAACTTATGCTGAAGATAGATCATGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAG ATAATACAGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCATCCAAGGCAGCTACTGCACGAATTCAG AAGGGTCTTATACGATACCTTTACATTGTTGTAGACCTGTCCAAGGCAGCTGCTGAGACGGACTTTCGACCAAGTAGGAT GGCTGTGATAGGGAGACTGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGCCTGGTTA CCATAAAAGATGGGGTTGCTCATTGCTTAACAGATCTTGGTGGCAGTCCTGAGTCCCACATCAAAGCTTTGACGGGTAAA CTGGAGTGCTCAGGTGACGCATCCCTACAAAACGCACTAGAGCTTGTTGTTGGCTATCTAAATCAAATCCCATCATATGG TCATCGTGAAGTTCTGATCTTATACTCGGCTCTAAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCA GAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAACATATCTGCCAAGAAACAGGA GGAACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAGTTCTAGAGCATGCTCCACCACCTCCAGCAATAGC AGAGTATGCTACTGCTAACTTAATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCAGTTGCAATTTGTACTTGTC ATGAAGAGGCTAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGTCGC GTCTGTGGATTAACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTCTTTCCTATAGTGCCATTTGATGA AATCTCTCCATCGTCTCGAAATGATCCAAGCCACAGTTTCTCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTC AGGGTTGTGGAACAGGAAACGTGCCTGGAATTTCGGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGAC ATCTACATTCATGAGAGCTTACATAATTGCCCAGGCTGTGAGAGTTTCAGGCATTCTACGTCAGTAACTGCTGCCCAATG A
Protein sequence (LotjaGi1g1v0661700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNISGRPLNGEVEDDDEDEANGGGLEAWERTYAEDRSWESLQEDESGLLRPIDNTAIHHAQYRRRLRALASKAATARIQ KGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIREFFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGK LECSGDASLQNALELVVGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECR VCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSFSNTCFGCQQSLLSQGCGTGNVPGISVTCPKCKQQFCLDCD IYIHESLHNCPGCESFRHSTSVTAAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PIRSF | 5 | 416 | 412 | 3.7E-160 | ||
| PANTHER | 24 | 416 | 393 | 6.0E-172 | – | |
| Gene3D | 80 | 265 | 186 | 3.5E-69 | ||
| SUPERFAMILY | 81 | 248 | 168 | 1.94E-16 | ||
| CDD | 82 | 264 | 183 | 4.84421E-103 | ||
| SMART | 84 | 260 | 177 | 2.6E-13 | ||
| ProSiteProfiles | 86 | 225 | 140 | 9.161 | ||
| Pfam | 90 | 280 | 191 | 4.4E-84 | ||
| TIGRFAM | 302 | 415 | 114 | 9.5E-37 | ||
| SUPERFAMILY | 337 | 414 | 78 | 3.77E-15 | – | |
| Gene3D | 345 | 413 | 69 | 7.5E-18 | ||
| SMART | 363 | 415 | 53 | 8.8E-18 | ||
| Pfam | 363 | 415 | 53 | 7.6E-18 | ||
| ProSitePatterns | 388 | 408 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIH core complex | The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0661700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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