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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0132200 |
| Transcript ID | LotjaGi2g1v0132200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47991516..47997691) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTCCAAATCGAGGACGTAACAATATACTTCCCCTACGACAACATCTACCCAGAACAATACTCCTACATGGTCGA ACTCAAGCGAGCCCTCGACGCCAAAGGCCACTGCCTCCTCGAGATGCCAACCGGCACCGGCAAAACCATCGCACTTCTCT CCCTCATCACCAGCTACGTCCTCTCCAAACCCCAATCGCCGTTGAAGCTTCTCTACTGCACCCGCACGGTTCACGAGATG GAGAAAACCCTCGCCGAGCTTCGGCTCCTTCATGATTACCAGACGCGATTCCTCGGGCCTGCGGCGACTATTCTTGCGTT GGGTCTCTCGTCTCGGAAGAATCTCTGTGTTAATTCCCGGGTTCTTGCTGCGGAGAATCGGGATTCGGTTGATGCTGGGT GCCGGAAATTGACGGCTAGCTGGGTTAGGGCGGTTGCTGCGGAGAATCCCGCGGTGCCGAGTTGTGAGTTCTTTGAGCAG TATGAGAGAGCTGGGTCTGGTGCGGTTTTGCCGCCTGGGGTTTACACTTTGCAGGTTTGGGTTTTGTGATTGTGTTAGGA ATTTGAGTTTGATTGGTTGGAGTGCTGGATTTCGATTCGTTTTGGGTTCTCCCTCCCCTATTCTGAAATGAAGATTGTTA GAACAAAAAAAATCAGTTTTGTTCGGTTTTGAATTGATCCATTTTGGATGTTATGTCCCTAAGTTCTGAAATGTTTGAAC TCTGATGAAAAAAAAACATCAGTGATTTGATTTTGATCGGCGTGGAAGCTGCCTGAGTTTGAAATATTTGAATTTTTGAA CTGGTTGAATGAAAATTTTGAACTAGGTTGGTTCAGGATGTTTTCTGATACTAAAACGTTTGAATTGTAAGTGTGGTGGG CTGAAAGATTTGATTTTTGATCAATTTTGAATGATCCCTGATTCTAAAATGCTTAACTTTGAGTGCGATTGAATTAAATT TTGATATTGTATATTTTCCAATGTTCTATTGGGGATGCTTGATTTTGATGGGTTTTGGATGTTCCCTCTGGAATTCTGAG ATGTTTGAAATTTTTATTGAAGAGATTTCAATTTCAATCTTTTTTGGTTGTTTCCTGATTCTGAAAAATTTGGACTTTTT TGAGTGGGGTTGACTGAAGGATTCAATTTTGAGCAGTTTACTATGGTCCCTAATACTTTAAAATGTTTAAACTTTGATTG TGGTTGACTTAATTTTGATTTTGTTCATTTTCAGATTGATCTGTATGATTGTGCTTTTTGGTTCGTACCATAATTTCTAA AATGCTTGAACTTGAATGTGTATATATGATTGTAGGATCTGAGAGCGTTTGGGAAGGAGAAGGGCTGGTGTCCTTACTAT CTGGCACGGCATATGGTGCAGTTTGCCAATGTGGTGGTGTATAGCTATCAGTATTTGCTTGATCCGAAGGTGGCTGGCAT AATATCTAAGGAAATGCAGAAAGAATGTGTTGTTGTATTTGATGAAGCTCATAATATCGATAATGTCTGTATTGAAGCGC TTAGTGTGAGTGTGAGGAGGCAGACTATTGAAGGTGCTAGAAGAAATTTAACAAGGATGCGCCAAGAAATTGACAAGTAT GTGTGTTTCTAGCTTTCTCCTCCGATGTTTTATGGTTCCAAGTTTTCACCATCAATTTCTTCAATAGAGAAGAAGAGGGT ATAATATATTTTAAAAAATAGGGGTTCTTTTGATTGTGGCAACATTTTATAGAATATGCAAGTTACTTTTGTAATCCTGC AATTGTTTGGTGGATTCATAAAATTGATCAAATTTTGTCTAGTTGTGACACTTGAAATTACTTTGCCTCTCCCTTCACAA TAGTCTCAATTTTGCTTTATTTTCCATTTAGTTCCCATATCTGAAATTTGATTCAGATTCTCGTAACTATTTTGAACTGG TAGGAAGGTTCAAGGCCACTGATGCAGGTAGACTCCGTGCTGAATACAACCGGCTTGTCGAGGGTTTGGCACTAAGAGGA GACCTGCCTGGTATTTAGGATGTCTCTTTTGTTAATGATGTCTTACTGTTACCTCTAGTCATCACTAACTGGAACTTATT TTTCTTTACATAGCCACGGATGGATGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAA TATTCGTCGGGCTGAGCATTTTATTCATGTTTTACGTAGATTAGTTCAATACTTTGAGGGGCGCATGGAAACAGAGAATG TGGAGAAGGAAAGCCCTGTTGGCTTTGTTACCTCTATTCTTAACCATGCTGGAATTGACCAAAAGACACTGAAGTTTTGT TATGATCGGCTTCATTCATTAATGATGACATTGGAAATTACAGATACTGATGAGTTCCTTCATATCCAAAGTATATGTGA TTTTGCCACACTTGTTGGTACATATGCTCGTGGTTTTTCTATTATAATTGAACCTTTTGATGAGAGAATGCCACATATTC CTGATCCTGTATTGCAGGTTTGATTTGTATCAACTCTATCAGTTTTTTAATGTAATATTAGTTCTTTGTTGTTAGATTTA TTTATTACATACGTGTATTTATGTTTCTTTTCTTATTTTTCTTCACCAATTACATTTCAGCTTTGTTGCCATGATGCTTC TCTTGCCATAAAACCAGTTTTTGAGCGATTTCAGTCAGTTGTTATTACATCTGGCACACTAAGCCCTATAGATTTGTACC CTCGCCTGTTGAATTTCAACCCTGTTGTCAGTCGAAGTTTTACAATGTCCTTGACCAGAGATTGCATATGCCCTATGGTG CTTACCCGTGGCAGGTATTCCCATTATTTGCTCTTCCATATTTTTGAGCAGATCTTTTATTTCCTTGAAAAACGCCTCTT TCACTTTCTGCTTTGTTGTTTTTTAAATGCCTAATAGATTTTTTGTTTCAGTGATCAGCTTCCAGTCAGCACCAAATTTG ATATGAGAAGTGATCTAGGTGTAGTGAGGAATTATGGACGGCTCTTATTGGAGATGGCTTCAGTTGTTCCAGATGGTATT GTGTGTTTCTTTGTCAGTTACTCATATATGGATGGGATAGTCAATAGCTGGAATGAAAATGGAATTTTAAAGGTAAGCGA ACTAGTCAACTTCATTGATTTCCATAGTACTTATAGTAGTGTGCATTGTCTTGTTTGGGGCTGATAAATGCATCTCTTTT GCAGGAAATAATGCAGCATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTAGAAACTACGTTGGCTCTTGACAACTACC GCAAGGCTTGTGATTGTGGAAGAGGTGCTATATTTTTTTCTGTTGCTAGGTAAGAAAATGTAAACATATCCTCCTGGGTT TTAAAACTTTTTTGTAATACTTGTTAATCAAACTACACTCTCTATTCAACTAAAAGGAAAATATATACTTTGTATGGCAA TATATCAATTGGCATATGTAGCTCCAGCAGACCAATAGGATATTGTGGGCATAGAATGTTCTGTTGACATGAATTTGTAT GATATTGCAAACTCAATTTTTGCGTCCTACTACTTAATCCGACATTTGGACTATAGGGTTTATCTTTATGTGTTACACGC CTTGGTTATTGTATATTAAAGCCAAACGTTCATGATATTTCCTGCAGTGTTGCTATGTTTAACAACTGAAACCTCTTCTG TCTTTTATGTGTTTACGATGACTAGTTTTGTCACTTCAAAACTCCTTTTTCTTAAGTTGTAAATTAAACTAAGATCTTGA GGTTTGAACTCTTTATCTATAGCTCTTTGCTTTTTTACATCCATGTTCATATGTACTACCTGCTTCCTTCCTTGATGCGC AGGTGACAAAATCTAGATTTTTCAGGTTCTAGAAATTGAATTAGCATGTGTAACTCCCCCTGGTAAAAAAATGGATCATT TCCCTAAATAGAATTAAATTTAACATCTGTAACTCCCCCTTTCAAGATTGTTCAAAACTTACTTTTGCAGCTTCTTGGGA GAGCTTTTGTTAAATAAAATGATCATTTCCCAAAAAAAGAAAGTATCAAATCAGCTGCATGGAGCAAATACTGCCTTTGT GTTTTGTCAAAACCTAATCTTTGGAGATGCCATTTAGATCCAACTCCTCTTTAATCGTTTTACATGAATTTTTTCTTGAT CTTACTCCATTAACTATTATGTTATCTTTCATCTTTTCTAAGGCTTGTATTGTTCTTCACACATGGCTGAACCATCTCAG GAGCAGTTGACTCTGCGTTCTTTTTCTTGATGAATGCAATTACTACTTTCTCTCTAATACCTTCATCCATGATCATATTC TTGTATGTTTACTCATAGATTTCAACTTTCGCACCTCTACAAGATTAAGCCTATGCTCTTGTTGGCAATTTACTACCCGT AATTAAATACCATAAAGCATAGTTGGTCTTATGAGTGTGCAGTATAGTTATTCTTTAAGCTTGATTGACACCTTTTAATC ACAAGAACACTTGGAAGTATCCTTCCATTTCATCCACCCAACTTAACCCTGTGATATGTATTTTCCTTTATCTCTCCAGT CTGCATTACTTTTTTTGGTTATAGAAGAGAGAATGTCTCTTCTCATTTACTAATTGGGCTCTCATCTAGTGCTGTATTTT TGTTTCTTACTATACCTGTCTATCATGTTCATCAAAGCCTAAGAAGAATATATGTACTCTTTGCAGAGGAAAGGTTGCTG AAGGTATAGATTTTGATCGACATTATGGCAGACTAGTAATCATGTTTGGTGTTCCTTTTCAATACACATTAAGCAAGTGA GTTACATGAACTATTGTGTTTCTCAATCTTTTATTCTTATCAAGCTCGTGGAGGTTAAATTGCTCGTCGCAGAACTTTTA AGAGTAGTAAACTTTCAGGATTTTGCTTGCACGCTTGGAATACCTCCGGGATACTTTTCAAATTAAGGAAGGAGATTTTC TGACTTTTGATGCTTTAGTATGACTCTCTCTCTACCTCAAAATGATTGCTTGATAATTTGGTAAATGGATTCCTAAACTC TGTGAAATTAGATCCTTGGTAACATCGGTGTTCTTATGCAGAGACAAGCTGCTCAGTGTGTGGGTCGTGTAATACGTTCA AAGGCTGATTATGGGATGATGATTTTTGCGGACAAAAGGTTAGTGTAAAAACTTCTGAAATTGCTTTAATATGATTGACC CTCTGAATGTTTGCACCTTTCTATTTAAAAAAAACAACACACTCTTCACCTGTCATCCCGAGATGGACTTTGAAGTTTGA AGTTACTGACCTCCTAATATTGAATGGCTTATGAGAAGAATCTTGACAAGCTATAAAGTCCGGTTTGTTAAGCTAATAAA GAAATATGTTTGTTCAGGGCCATGGCAATTTTTAACCCAATGTAATCAAATCAACTGTAGGCGTAAATCGTGTAATCAAC AAAAACTGTGATGTTACTGTAAATATATGATTATTATTATTATAGTTTCTGTACATCATTGGAGATAACCAAGTTGAACT TTGAGAGTTTTTTATATATAGTAATCCTTACCTATTTTGCTGTTACTTGGGTAAAGCACCAAATAGATCTCTTTTTCTTT TCTTTATTGTGAACACACCTAGTTACTTCCAGAATGTGTGATGTAATACTAGAAGATGTACTGAGCTTATCTATCTGGGA TGACTGCATCAATTATGGTTTTGGTTTCTACTTAATTTTTCTCTTCGACAGAGTTGTGACTCAAACTGCATGGTTGGTTA TTACTGCACGCAGGTATAGTCGTCATGACAAACGGTCCAAATTGCCGGGTTGGATACTCTCTCATTTACGTGATGCGCAC CTAAACTTGAGCACTGACATGGCTTTGCATATAGCGCGTGAGGTTGGTCCACAACTGTTTTGATGTTTGTTGAGTTACTT TTATTCATGTCATTATTCTCGACGCTACATTGGTCAACATTTTTTTGGTTTATGTTCAGTTCCTAGTATCCATTTCTCTG TCGATTATTTCCCATCAGATTGATTATGCTGTGCTATTTTGTGTGAAGTTATTGTCTTTAATTGCCTAGTAAGAATTTGA GTTCCAAAGTATCAGCGTTAGACCTTCCAGCATTCCAGTACACTTGATCGAATGATCTTGTAAATCTAAAAACCAAAGTT TCAGATTCAATAGTAG
CDS sequence (LotjaGi2g1v0132200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCCAAATCGAGGACGTAACAATATACTTCCCCTACGACAACATCTACCCAGAACAATACTCCTACATGGTCGA ACTCAAGCGAGCCCTCGACGCCAAAGGCCACTGCCTCCTCGAGATGCCAACCGGCACCGGCAAAACCATCGCACTTCTCT CCCTCATCACCAGCTACGTCCTCTCCAAACCCCAATCGCCGTTGAAGCTTCTCTACTGCACCCGCACGGTTCACGAGATG GAGAAAACCCTCGCCGAGCTTCGGCTCCTTCATGATTACCAGACGCGATTCCTCGGGCCTGCGGCGACTATTCTTGCGTT GGGTCTCTCGTCTCGGAAGAATCTCTGTGTTAATTCCCGGGTTCTTGCTGCGGAGAATCGGGATTCGGTTGATGCTGGGT GCCGGAAATTGACGGCTAGCTGGGTTAGGGCGGTTGCTGCGGAGAATCCCGCGGTGCCGAGTTGTGAGTTCTTTGAGCAG TATGAGAGAGCTGGGTCTGGTGCGGTTTTGCCGCCTGGGGTTTACACTTTGCAGGATCTGAGAGCGTTTGGGAAGGAGAA GGGCTGGTGTCCTTACTATCTGGCACGGCATATGGTGCAGTTTGCCAATGTGGTGGTGTATAGCTATCAGTATTTGCTTG ATCCGAAGGTGGCTGGCATAATATCTAAGGAAATGCAGAAAGAATGTGTTGTTGTATTTGATGAAGCTCATAATATCGAT AATGTCTGTATTGAAGCGCTTAGTGTGAGTGTGAGGAGGCAGACTATTGAAGGTGCTAGAAGAAATTTAACAAGGATGCG CCAAGAAATTGACAAGTTCAAGGCCACTGATGCAGGTAGACTCCGTGCTGAATACAACCGGCTTGTCGAGGGTTTGGCAC TAAGAGGAGACCTGCCTGCCACGGATGGATGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCT GGAAATATTCGTCGGGCTGAGCATTTTATTCATGTTTTACGTAGATTAGTTCAATACTTTGAGGGGCGCATGGAAACAGA GAATGTGGAGAAGGAAAGCCCTGTTGGCTTTGTTACCTCTATTCTTAACCATGCTGGAATTGACCAAAAGACACTGAAGT TTTGTTATGATCGGCTTCATTCATTAATGATGACATTGGAAATTACAGATACTGATGAGTTCCTTCATATCCAAAGTATA TGTGATTTTGCCACACTTGTTGGTACATATGCTCGTGGTTTTTCTATTATAATTGAACCTTTTGATGAGAGAATGCCACA TATTCCTGATCCTGTATTGCAGCTTTGTTGCCATGATGCTTCTCTTGCCATAAAACCAGTTTTTGAGCGATTTCAGTCAG TTGTTATTACATCTGGCACACTAAGCCCTATAGATTTGTACCCTCGCCTGTTGAATTTCAACCCTGTTGTCAGTCGAAGT TTTACAATGTCCTTGACCAGAGATTGCATATGCCCTATGGTGCTTACCCGTGGCAGTGATCAGCTTCCAGTCAGCACCAA ATTTGATATGAGAAGTGATCTAGGTGTAGTGAGGAATTATGGACGGCTCTTATTGGAGATGGCTTCAGTTGTTCCAGATG GTATTGTGTGTTTCTTTGTCAGTTACTCATATATGGATGGGATAGTCAATAGCTGGAATGAAAATGGAATTTTAAAGGAA ATAATGCAGCATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTAGAAACTACGTTGGCTCTTGACAACTACCGCAAGGC TTGTGATTGTGGAAGAGGTGCTATATTTTTTTCTGTTGCTAGAGGAAAGGTTGCTGAAGGTATAGATTTTGATCGACATT ATGGCAGACTAGTAATCATGTTTGGTGTTCCTTTTCAATACACATTAAGCAAGATTTTGCTTGCACGCTTGGAATACCTC CGGGATACTTTTCAAATTAAGGAAGGAGATTTTCTGACTTTTGATGCTTTAAGACAAGCTGCTCAGTGTGTGGGTCGTGT AATACGTTCAAAGGCTGATTATGGGATGATGATTTTTGCGGACAAAAGGTATAGTCGTCATGACAAACGGTCCAAATTGC CGGGTTGGATACTCTCTCATTTACGTGATGCGCACCTAAACTTGAGCACTGACATGGCTTTGCATATAGCGCGTGAGTTC CTATAA
Protein sequence (LotjaGi2g1v0132200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFQIEDVTIYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPQSPLKLLYCTRTVHEM EKTLAELRLLHDYQTRFLGPAATILALGLSSRKNLCVNSRVLAAENRDSVDAGCRKLTASWVRAVAAENPAVPSCEFFEQ YERAGSGAVLPPGVYTLQDLRAFGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKECVVVFDEAHNID NVCIEALSVSVRRQTIEGARRNLTRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPATDGWLANPALPDDILKEAVP GNIRRAEHFIHVLRRLVQYFEGRMETENVEKESPVGFVTSILNHAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQSI CDFATLVGTYARGFSIIIEPFDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFVSYSYMDGIVNSWNENGILKE IMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL RDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 721 | 719 | 0.0 | – | |
| PANTHER | 3 | 721 | 719 | 0.0 | ||
| ProSiteProfiles | 7 | 285 | 279 | 38.503 | ||
| SMART | 8 | 280 | 273 | 9.5E-126 | ||
| PRINTS | 8 | 25 | 18 | 7.3E-80 | ||
| TIGRFAM | 9 | 708 | 700 | 3.3E-236 | ||
| Gene3D | 15 | 285 | 271 | 8.7E-54 | – | |
| CDD | 27 | 240 | 214 | 2.61338E-43 | – | |
| SUPERFAMILY | 31 | 678 | 648 | 1.22E-13 | ||
| Pfam | 72 | 255 | 184 | 3.0E-51 | ||
| Coils | 256 | 276 | 21 | - | – | |
| Pfam | 270 | 412 | 143 | 4.4E-27 | ||
| PRINTS | 273 | 292 | 20 | 7.3E-80 | ||
| PRINTS | 308 | 326 | 19 | 7.3E-80 | ||
| PRINTS | 333 | 354 | 22 | 7.3E-80 | ||
| PRINTS | 372 | 394 | 23 | 7.3E-80 | ||
| PRINTS | 403 | 421 | 19 | 7.3E-80 | ||
| CDD | 451 | 480 | 30 | 3.97382E-10 | – | |
| CDD | 488 | 684 | 197 | 3.88456E-67 | – | |
| PRINTS | 492 | 509 | 18 | 7.3E-80 | ||
| Gene3D | 500 | 697 | 198 | 9.6E-39 | – | |
| Pfam | 524 | 697 | 174 | 3.0E-41 | ||
| SMART | 542 | 686 | 145 | 5.5E-71 | ||
| PRINTS | 636 | 658 | 23 | 7.3E-80 | ||
| PRINTS | 707 | 721 | 15 | 7.3E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Molecular function | Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. |
Expression pattern of LotjaGi2g1v0132200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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