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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0321700 |
| Transcript ID | LotjaGi2g1v0321700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79647585..79651234) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATACAACACTCTAAAACCCTATCTATCCGCTACTATATAAAATGCTACAAGGAACCCTAGCACAGTACGATATCC CATTTCGTCCACTTCCATTGCCGCCACTGCGAGAGAGAGCGAGAGAAAACCCTAATTCCGATCCGAAGATGCAGATCTTC GTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCATCCGACACAATCGACAACGTCAAGGCCAAGATCCA AGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACACTTGCTG ACTACAACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGCGGTGGCGCTAAGAAGCGCAAGAAGAAGACC TACACCAAGCCCAAGAAGATCAAGCACAAGCATAGGAAGGTTAAGCTCGCTGTGTTGCAGTTCTACAAGGTTGATGACTC TGGCAAGGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGCGGAGTGCGGTGCTGGGACTTTCATGGCGAACCATTTTGATC GCCATTACTGTGGGAAGTGCGGGCTCACCTATGTTTACCAGAAGGCTGCTGCGTAATGAGTTTTTCTCTATTTGAATTTA TGAAGTTTTGGTCATTTATGTTTGAATAGTGGGTAGACATTTTACCTTAATCGCTATGACTGTTTGGATATTTCGGTTTT AATAGTTTTGGAATTTATGTGAACACTGTTTTGTGTTGGTTAATTATGGTTCCCTTTCATATATTGTTAATTGGGTATAA GCTTGTTAAGGTTTTTCATTATTTTATTATTATGCGATTGTTCTGCTGTGCTGCTGGCTTTGCTCTAATAGGTGACTGTC TTGTTTCATATAAATGAGATAAGTAGAAGTGGTTTTTAGCAGATGTGTTTTCATGCCCATTGATATATGATTTGGGCACA ACTTGATGGTCTTCCATTTTGATTTGTTCTAGACATTATAGGTGGTGTTAGCGATTATAGGCGGTGTTAGGAATGCATCC TAGAAGATATCGGAAATATGGAAGTTGGGTTTCCTTGTCTTGTTGTTCTTAGTTAATAAGCTTTCTAAATCGTTTAATCT GGTAGATTAGTTTCATCTGTACATAACAAATCCTATGAAGAAATGAATTTTCTGTACACTCGTTTTATTTCAAATTAATG TTTTTGGTGTGACTTTTTGATCATCTTTGTAATAAAATGTTCTTTGTTTCAACTTTGAACAACTTGAAAGTTAACTTGTA TTGTTCTGTTTGTAAAAGATGTCTGAATTTAAACTAAAGCCGTCTGCATCAAAAATGTGTTTTTCAGCATTGCTATAGTT TACAATACTCTTTAAAAAATTGCATGAAATGCCAATTGAATGTGTAGTGTACTGTTTTTACTTTTTATTGTCATGTTGCT TGAGAGGACTCACTGTGAGTGAGGGGGCTGAAATAGGTGTTAGGATTATTGATGGGTTTGTCTTTAAACTGGTACCTACC CTTGCTTGTGTGTGTCTAGTTCGTCAAGCAATCCGTTCCATCTTGGATGTTTTCTGCAATTTCTAACTAGTAAGTGTATG CTGCTATTTGCATTGTTCCCTATTTGATGTTTTCTGCAATTTCTAACTAGTAAGTGTATGCTGCTATTTGCATTTGTCCT TACTATAAATCATGTTTTCAGTGTAAATCCTAAAGGTTTGAAAGGATAGAAACTAATTAGCCAACTTTCACTTGGGATGG ATAGAAAAAATCAACAGTCATGTAGAGTGGGGGTGACAGTATGATCTTCATAATATATAGACATAGCATAGTGGTAATGG ATACGTTTCACTTGTTATGGACATGTGATATACATGAATGTTCAGAGTTAATGGTTTATTTGATTGATCTGCCAATAGAA CTATGTGAAATACGTGTGTTATAAGTGGTTCTCTTAGTGATGAAAGTGTAGTGGTTATGTCATTGGATTCCTATCATGAG TAAACATATTTTGGGGCTTTATTTTTGTAGCCATTGAGCGTCACACCAGCTTGTAGCTATGAAATTTTTCAGTGGTTATG CTATGAATTTTGTACAATGATGAGTGACTAGATAAAATTTGGCTCATATGAAGGGGTCCTTTGTCCAAGGTTCTTTGATT TAGTGAGTTTACAAAGTACATTTCCCTACCCGGTATAGGATATTTAGCTTCTTGCGGATCACAGAGCACCTTGTGTCTTT ATAGTAGATAAACTTCGTTAAGTGTTCTCTATTCTATATTCAAGTAGGCCCTACTCTAACATTAACTTTAAGTGTGGGTG GTACAGGTATTAAAGGATTATTGCTGAGATAAGATTTAGGTTGGATTGATTCAAAGACTCAATTTTATTTGCATTTCTTC GATTAATTTTCATACCTTATTGTTGGATGAACATAATTTTGCTTCATAGTCACATAAGTCTAAAACTACAATTTTCCAAG CACTAAATTGGGACCAAAACTCCAAAAGTTCATAAACTCCTAATTTTTTAACACCTTACGATAAAGAATGATCAGTTTTC GTTAGGAAGCTCTATTGCGATCTTTGGGATTCATCTAAGTGACAGACACTTGCCAATCCCACCTGAGAAAGCTCTTTATT TCCTGAAACCTGAACGAAAATAGGATTAGAAAAAACTAGTGTAATTGCTGCATATGTTATATTTTTCTTAAATGTTACTT GAATTTAATTACACTTTGTAAAAAGAAATGGTCCATTATTTTACGAACTACACTTAATCAGTAGAAACAAAAATATCTTC ATCTACAAACAAATTAAAGTACAAGTAAATTTGAAAGCATCCAAATGCAATTTCTTAATTGTCTTTGCCTTAGGGAGTCT CAAATATCAAAGGTGCCAAAATATTGATTACCTTTTTCTACTACTCTCTTTTCCTAAACACTTTCAGGGTTATTCAAACA TATTTGAGACCAATTTGTTGTTGCAAATACAACACAGCTCTCTCCACTGCCTTAGCAGCACAAGGCTTTGTCCCTTCTTA AAAAAATATTTCTCTTGATCTAGCTTCATAATGCTTCGTCAGAAGGGCACCTTTTATAACATGACCTCTTCTCATCAGCC TTCACTGTTCTTGGGGTCAGTACTTTTGTCAAAGTGATTTTGGACAGATCGTTCATGCTCTCCAATGAAGTTATAGATGC TTCATACCTCTCAGACATTGTTACCAGAATTTTCTTAACAATTATGGAAGTAGAAAAACCACTACCCGACAACCTTATTT TGTTGGCAATCCTTAACATTGAGTATTCTTTGATTTCCTGAAACACTTTCATCCTTTGCAATTGAAATTCCCTCATTAAA ATGTGCACCTGCATGCTTCAACATATTCCTCCTTCAGATAATCCCGATTTGAGGGCCATAATTCGTGTGAGTTTGAGTAG AAAAAACACGCCTTTGTTTTTATCTACTTATGAATTTTAATCTAGGCAATGGTCTACCTATTTGGTATCGAAAGTGCTTT ACAATCCTCTTCCATAGCTTTCCAAATATTGAATGCCGTCAGGTAAGCCTCCACTATCACTACCCAAGAATTAAGAGTTA TAGTTTTCCCCTTCAAATACTGAAAGAGCGGTGTGAGAAATTTTATTTTT
CDS sequence (LotjaGi2g1v0321700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACAAGGAACCCTAGCACAGTACGATATCCCATTTCGTCCACTTCCATTGCCGCCACTGCGAGAGAGAGCGAGAGA AAACCCTAATTCCGATCCGAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCAT CCGACACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCC GGGAAGCAGCTGGAAGACGGCCGCACACTTGCTGACTACAACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTCCGTCT CCGCGGTGGCGCTAAGAAGCGCAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCATAGGAAGGTTAAGC TCGCTGTGTTGCAGTTCTACAAGGTTGATGACTCTGGCAAGGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGCGGAGTGC GGTGCTGGGACTTTCATGGCGAACCATTTTGATCGCCATTACTGTGGGAAGTGCGGGCTCACCTATGTTTACCAGAAGGC TGCTGCGTAA
Protein sequence (LotjaGi2g1v0321700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQGTLAQYDIPFRPLPLPPLRERARENPNSDPKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA GKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAEC GAGTFMANHFDRHYCGKCGLTYVYQKAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 28 | 111 | 84 | 6.84E-36 | ||
| PANTHER | 30 | 185 | 156 | 3.0E-106 | – | |
| PANTHER | 30 | 185 | 156 | 3.0E-106 | – | |
| Gene3D | 30 | 111 | 82 | 1.8E-44 | – | |
| ProSiteProfiles | 35 | 110 | 76 | 30.452 | ||
| SMART | 35 | 106 | 72 | 3.0E-35 | ||
| CDD | 35 | 110 | 76 | 2.28887E-55 | – | |
| Pfam | 37 | 108 | 72 | 4.7E-34 | ||
| PRINTS | 45 | 65 | 21 | 7.8E-39 | ||
| ProSitePatterns | 61 | 86 | 26 | - | ||
| PRINTS | 66 | 86 | 21 | 7.8E-39 | ||
| PRINTS | 87 | 108 | 22 | 7.8E-39 | ||
| Gene3D | 113 | 188 | 76 | 3.3E-40 | ||
| SUPERFAMILY | 134 | 186 | 53 | 7.69E-21 | ||
| SMART | 136 | 181 | 46 | 3.1E-28 | ||
| Pfam | 136 | 181 | 46 | 2.3E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi2g1v0321700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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