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LotjaGi3g1v0022800.1

Overview

Field Value
Gene ID LotjaGi3g1v0022800
Transcript ID LotjaGi3g1v0022800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr|G7IHW5|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2501205..2507078) extracted from Lotus japonicus Gifu genome v1.2.

GCCCCACACAAATCTGTTTCTTTTCTCCCCTCCAATTGTGATATCACTGATATGATATAACCTGTTGTTGGTCTCACTCT CACTCACCGGCAGCCCAAACCGCCGCAAAATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGC AAGCTTCGACCATCATCTCACCGTCTTTCTCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAAC CACCACCACCACCGCCGCCACCACCAGTTCCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCG CTTTCAAAGGCAAGGGCCTCTGCAAGGTCACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGC TTCATTGGCCGTGTCACCCGCAAGAAGGGCAATTATGCTGAGGTCCCATTTCCTTTTTCACTCTCCATTTCCATTTGCAT TCATAGATATCTCAACTTTATCTCAATTAATAGCAGTAGTGTAGAAGGGTCATGTGTTAGTGTAAGAGTGAAAGTTTAAC AATGTGTTAGTGTGTTTGGATAAAGGTTGAAAATCAGTTGAAGTTGAAAATGTAGAAGGAAGAGATTGTTACATTGATTT CAATGTTTAAGTTGGCTTTGACTGTTAAACAATCATACACTAACACTATAAGATGAACAATGGTTGATAATAAGAGTAGG TAGTATAGAAATTTTTAGAGGGGTAAATAATTGAGAATTTTTTTCTCTTGAGTAAATGGCGAAAGTTTAACTCGTAATTC GGTAACAGTGTGTTTGGATAGATGTTGAAAGTCAGTAATAAGGTAGAAGGAAGAAATTGTTCCATTGGTTTGAAAGTCCT TTTAAGTTAGTTTTAACTGTTCGCCAAACATACACTAAGTAAGATTAACAATGTTAGTTGTAAGAGCAATGTAAATTTTT TGATGGCAATACAAAATTTGAATTTTTCTCTTGCGGGTGACTGTCCCATTTTTCAATTATGTAGTTCTGTCCCTGAGTGC AGGTTACTAAGGTGAAGACCTTAACTCCTCCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTTACTGTGGGGGA TGCAAGACTCAGAATTTGTCTTATGAAGCTCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATTATACATGTGGG GAAGTTTTCTATCAAGGAACTGGAATTGCATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTTTCATTATAGAA ATAAGGTTAGTTGTGTAAGATTGTAGTAGTAGTTCTTTGTAATATCAAATATTATATGAGGATGGTGAATGAGTTCGGTT TTTATGCTTTATGCAGATGGAATTCTCATTTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGG ATGCTGGTAGTGAAAATTATGCATTAGGATTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTA CTGCAAACTGATCCCGCTAACAAGGTATGCAATGTTATTATTTTTTATTTAAAATCATAAGACTGTATAGGTGAGGCAAA GCTAGTCATTTTTCCCGATATGTTATCAGTATAAGTTAAAACGCTCATAACAAATAAGGGATGAAAAGCCCCAGGTTAGG CAATCCTAGATTCATATTGTAAATACAAATCAGTCTGTTTTTCTTGGGTGTCTCTTATTTTCTCAAATTTGACTTGTGCC CGAACACCCTAGGCTACAGATATTTAAAACTATTCTTGATCATTTTGGCAATTATACCCCATTAGAAAGTTAGATGTGTG TGCATTTGGGATGGGGTGGCTCTGGGGCATGAGCTCTTTGCCTGAAACAGAAATTTGCTATAAGATGCCAGAGGCACTGA TCCTTTGATAACTGAATGGGCCTTACCTGAAACGCCAAGTGGCACTGACCCGTTAACTTCCCTTGTCTCATCTCACTGCA TTGGACTCTTCTTTATGTGTCTTTACTCTTTAGTTACACTGCATTACCCAGTGCATTAATTTTGTAAGGTTTAATTGTTC TTTTATTTTTGGGACAATAATCTACTCTTAGATTTTTTAGTTGATTTACTATCACATCTTGGTAGTTTGTTCAATTAGGG AAATTACACTTTCCTTCTGTTTTGACTTGAAATCTGAATAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAA CTTGGTTTATCTCCCTATAATGTTTATTCACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGTATATAAC ATATATCTTATGTTCCCTGGTTTGATTGTTTGAGGTACTTTTGGATCCTGTAGATATTGCATCTATACCCTCGGATAATT CTCAAACATTGCATGGATATGGGCATGACAGTTTTTCTGAAACTAGGGAGGGTATGAGTATGTAAAGATATATTTTTTTC TATTTTTAAATAATATACAAATAAGAAAGTAAATGAATCATTAGATAAAGACAATTTCCATAATTGTTCAATCCCCAAGT TCTCAACGAAACTGCATAAAATATGTCAAGTATACAAAGCAAGAATACCTGAAGAGGAGGGTATCAAGGGGTGAAATAGC AATTTGTTTTTTTTGGTAGCAAACAGATCTGGAATTTAATGAAAGAGAAATGAAACACAGTACTGGAGGTTCTGGAATCC TCCTAGCGGCACTGGGGAAAAATAAAGAAAACAAGAATAGTATAAGACACTTTCTTGAATTGAAGAGTGTCATGGTTATT TGTGTACATCCCATACAGTTATACCTTATTATGTCTTTGAAGGGCGCCTTGTTTTTTTATTTCAGGGATGTAACAACTGA TCTTCCTGAACTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTG CGTTTCCTGAAGTGGTTGTTTTTTTAATTACTTTTTTCTTTTGCATATACATTCTGCTTCAGCTTCTCAACCTGTGTCTC TTCCTTAACTTTCCAAATGCCTAAAATCTGTTTTGCTTGAAAATAAGTTCTGTTTTTGTTAAAGAAATTGACCATTCAAG TACTTCCACCTATCAACTCATGGTTTTAGGGGTGTTGGTCTCGGAAATTGATGTGGTGGTAGTAGAGCCTTTTTGATCAA ATGGTTTGAGGTTTGAGCATTGTTACCTCCATTCTTGATAATTACGGTGAATTTATTTACAAGGTAAAATTGGTTTGTAT GTTCTCACTATGCTTCAAGCCTAGAGGGCTATAACATGAGGGGGTGTCTAAATGACATAAAACTATCCGTGCTTTCACCA ACCTTAAGCCTTTAGAAGAGTTGGTCCTTACCAATTTTTGTGAATTATTTGATTGACCCCTAGATTTCAAGGTATATCCA AGGGATAGACCCTGTAACATTATCTTCCCACTACTAAATGGGGTGGAAGTGAGGGTGCATTTTTGTTTTTGTTGTCTAAG ACATTTCACGGTCTCGCACTGAACTCATTGCTAAACCATGCTTTGGACTTTGTGTGGGGTCAGGTGTGAGAGAACCAATG AAAGTTGGATGTGTAAGAGATCCCTTTAAAATAAGCATTTGCATTTTAGTTTTGTTGGTGAACTCTATTAGTCTATTAGT TTGCAATGCATTTATACTCAATATTTTAAAGCCAACAGTGTTATAGATTTTTTTTTTGGGAATTTGTCACGTAATGACAT TGCTAACTTATTTCTAAACAGTATATATGTAGTTTTTAATACCATTTTCTCTGCCTGATTTATAGGTAAGCATCATGAAT AATGTAAATACTTCTGTTGGTAACACATCTGTCGGGGAGGAAGAGTACACTTTGTATGGGAAATCTAACATTACCGAGAC CTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAATACCTCTCAGGTTTGCAATAGGCCAAAAA GTTTTTCTCTTTAGATCCTGCAGTCATCGTTCCTGAAAATAATAAATTTTATCCATTTCAGGCAGAGGTTTTGTATAAGC TTATAGAAGAATGTGCTGGTGTCAGAGGAGATGGCTCAGAAATTGTCCTTGACCTTTTTTGTGGGACCGGCACCATAGGT CTGACACTTGCAAGAAGGTAATCTCTTATATTCATCTGGTTTTCTTGTTTTTTAAGAAACTGTCAAACCATGAAAGTAAT GTCTTCTATTCCTATTTTGAACAGTGCAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGCTGATGCCCGTC TCAATGCCAAAATAAATGGTATACAAAATGCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGAATTTTGGGAGG AGTTTTCCTAAACCTGACATTGTCATATCAGGTTTTCTTTCTCTAAGTTTCATTATTCCTACTTATTCTCTATGTTTTAT TTATCTCTGTCAATTAGATTGGCTTGTGTTGGAAGCTATTTATTGACTTGAATATAGTCTCATTGTGTGACCTCAATGCA TCACACTTCTCACCATTATAAACTTTATGCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTAA ATCTTAAGGCCCCTCGAATAGTGTATGTGTCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCTCTGTCATGGT GTGGTATGTATCATTTTATCATACATTAGATTTTGTTAGTTGAGATCAAGTCATTTGAGTTGTTGGAGGTTTTGTGCAGG CAGAACTGAATCTGAAAGGATGTTACAAGTTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACACACCTCATATTGAG TGTGTTTGCCTTCTGGAGCTTTCTTAATCTGCGAATTGTGATCAATTAAACCTTTACATTTCAAGGTTGGGCACAATTTC ATTTTCTCTGCTACATATTAGACCTTGGATGGCTGATGAATTTTGAGTTACTGTTTTTATGAAACATCTAAGGCACTGTT CATTTGGAATAGATTTTGGAAAGACCTAGCAATTATCATTACACTTGAACTAATTCAAATTATATTTCTTAAAAAAGTTA TATTATTGATTGTTTGCTTATTTGCTTCTTCCTTTTAACGTCTATTTCTCTGTTTCTGACATGTCGTTCAGGCTATAACA AGGTTGACTCAAGATATAATTCAAGGTTGGGTCCTCAAGGTGATGATACATTTATGCTGCAAGGTGTGACTAATGCTTAG CCTGCCCAAAACTATTGCATCAGTGCTCCCAAAAGGTTGGAAAACACGGATCAATGACTACATTGTTGCAAACTTGTGAA AGTTTCTCAGCTATTTCTATTTATGCAAAGCCACCAACAGGTTGGATTAATGCCTAGCCTCGAAATGTGGATTACTGTTG AGTGTTGGTATCCCTCACCATGTGACAAGTCCATCATGAAATGGATCATGTGCTACACTTGTCAGATCCTTGCTTACTTA AAGAAAGTTGAGGTGCAAATCCTCATGGATTATTTCAGATGAGTATGTATTATTCGATGTGTGCATAAATTGATTGTATT CAGTTCTTATCTAGTTCTTCATAGTTTATATAGCTTCAAGACTAAATGCTGCTGTCATGTTGGGGAAAGGTGGCTGGAAT AGGCTTCCAATTCATTTTGATTTGTGTATTGATATTGTTATTCCTGGTTTTGCCTGAGATCAAAGGGGTACTAGGTTCTA GCTCTGAACCAATGCATGATGATATTCAATAGCTAATTTAATCACTATATATATCGAGATTATCCTTTCCCTCTATATTT AACTGGGTTCACGTAGTCAGTATTCAAGTGTTTC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGCAAGCTTCGACCATCATCTCACCGTCTTTC TCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAACCACCACCACCACCGCCGCCACCACCAGTT CCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTC ACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATTGGCCGTGTCACCCGCAAGAAGGG CAATTATGCTGAGGTTACTAAGGTGAAGACCTTAACTCCTCCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTT ACTGTGGGGGATGCAAGACTCAGAATTTGTCTTATGAAGCTCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATT ATACATGTGGGGAAGTTTTCTATCAAGGAACTGGAATTGCATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTT TCATTATAGAAATAAGATGGAATTCTCATTTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGG ATGCTGGTAGTGAAAATTATGCATTAGGATTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTA CTGCAAACTGATCCCGCTAACAAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAACTTGGTTTATCTCCCTA TAATGTTTATTCACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGGATGTAACAACTGATCTTCCTGAAC TTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTGCGTTTCCTGAA GTGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATCTGTCGGGGAGGAAGAGTACACTTTGTATGGGAA ATCTAACATTACCGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAATACCTCTCAGG CAGAGGTTTTGTATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGAGATGGCTCAGAAATTGTCCTTGACCTTTTTTGT GGGACCGGCACCATAGGTCTGACACTTGCAAGAAGTGCAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGC TGATGCCCGTCTCAATGCCAAAATAAATGGTATACAAAATGCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGA ATTTTGGGAGGAGTTTTCCTAAACCTGACATTGTCATATCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAA TTCCTGCTAAATCTTAAGGCCCCTCGAATAGTGTATGTGTCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCT CTGTCATGGTGTGGCAGAACTGAATCTGAAAGGATGTTACAAGTTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACA CACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAATISNLTNTLPLHLRKLRPSSHRLSLSTLACSLPEPTTTTETTTTTAATTSSYFPKRGQTLELVCESLAFKGKGLCKV TETGFVVMCDRALPGERFIGRVTRKKGNYAEVTKVKTLTPPRDVVDAPCVYAPYCGGCKTQNLSYEAQLSAKEEQVRDLI IHVGKFSIKELELHGIMKPIVRCDIQFHYRNKMEFSFGPQRWLPKESLHERREDAGSENYALGLHAPGFFDKVLNVDKCL LQTDPANKVLAAIQECWRDPQLGLSPYNVYSHLGFLKHLMLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPE VVSIMNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFC GTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSFPKPDIVISDPNRPGMHMKLIK FLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLELS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF50249
52 112 61 6.85E-9
IPR012340
Gene3D
G3DSA:2.40.50.140
52 135 84 3.2E-9 –
PANTHER
PTHR11061
53 545 493 4.8E-199
IPR010280
PANTHER
PTHR11061:SF30
53 545 493 4.8E-199 –
ProSiteProfiles
PS50926
56 116 61 10.655
IPR002792
TIGRFAM
TIGR00479
70 538 469 7.2E-89 –
SUPERFAMILY
SSF53335
125 544 420 3.82E-68
IPR029063
ProSiteProfiles
PS51687
136 546 411 71.977
IPR010280
Gene3D
G3DSA:3.40.50.150
137 540 404 7.3E-101 –
Gene3D
G3DSA:3.40.1350.30
190 367 178 7.3E-101 –
Pfam
PF05958
355 544 190 7.2E-17
IPR010280
CDD
cd02440
395 493 99 9.74347E-14 –
ProSitePatterns
PS01231
528 538 11 -
IPR030391

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0022800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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