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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0022800 |
Transcript ID | LotjaGi3g1v0022800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr|G7IHW5|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2501205..2507078) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCACACAAATCTGTTTCTTTTCTCCCCTCCAATTGTGATATCACTGATATGATATAACCTGTTGTTGGTCTCACTCT CACTCACCGGCAGCCCAAACCGCCGCAAAATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGC AAGCTTCGACCATCATCTCACCGTCTTTCTCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAAC CACCACCACCACCGCCGCCACCACCAGTTCCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCG CTTTCAAAGGCAAGGGCCTCTGCAAGGTCACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGC TTCATTGGCCGTGTCACCCGCAAGAAGGGCAATTATGCTGAGGTCCCATTTCCTTTTTCACTCTCCATTTCCATTTGCAT TCATAGATATCTCAACTTTATCTCAATTAATAGCAGTAGTGTAGAAGGGTCATGTGTTAGTGTAAGAGTGAAAGTTTAAC AATGTGTTAGTGTGTTTGGATAAAGGTTGAAAATCAGTTGAAGTTGAAAATGTAGAAGGAAGAGATTGTTACATTGATTT CAATGTTTAAGTTGGCTTTGACTGTTAAACAATCATACACTAACACTATAAGATGAACAATGGTTGATAATAAGAGTAGG TAGTATAGAAATTTTTAGAGGGGTAAATAATTGAGAATTTTTTTCTCTTGAGTAAATGGCGAAAGTTTAACTCGTAATTC GGTAACAGTGTGTTTGGATAGATGTTGAAAGTCAGTAATAAGGTAGAAGGAAGAAATTGTTCCATTGGTTTGAAAGTCCT TTTAAGTTAGTTTTAACTGTTCGCCAAACATACACTAAGTAAGATTAACAATGTTAGTTGTAAGAGCAATGTAAATTTTT TGATGGCAATACAAAATTTGAATTTTTCTCTTGCGGGTGACTGTCCCATTTTTCAATTATGTAGTTCTGTCCCTGAGTGC AGGTTACTAAGGTGAAGACCTTAACTCCTCCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTTACTGTGGGGGA TGCAAGACTCAGAATTTGTCTTATGAAGCTCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATTATACATGTGGG GAAGTTTTCTATCAAGGAACTGGAATTGCATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTTTCATTATAGAA ATAAGGTTAGTTGTGTAAGATTGTAGTAGTAGTTCTTTGTAATATCAAATATTATATGAGGATGGTGAATGAGTTCGGTT TTTATGCTTTATGCAGATGGAATTCTCATTTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGG ATGCTGGTAGTGAAAATTATGCATTAGGATTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTA CTGCAAACTGATCCCGCTAACAAGGTATGCAATGTTATTATTTTTTATTTAAAATCATAAGACTGTATAGGTGAGGCAAA GCTAGTCATTTTTCCCGATATGTTATCAGTATAAGTTAAAACGCTCATAACAAATAAGGGATGAAAAGCCCCAGGTTAGG CAATCCTAGATTCATATTGTAAATACAAATCAGTCTGTTTTTCTTGGGTGTCTCTTATTTTCTCAAATTTGACTTGTGCC CGAACACCCTAGGCTACAGATATTTAAAACTATTCTTGATCATTTTGGCAATTATACCCCATTAGAAAGTTAGATGTGTG TGCATTTGGGATGGGGTGGCTCTGGGGCATGAGCTCTTTGCCTGAAACAGAAATTTGCTATAAGATGCCAGAGGCACTGA TCCTTTGATAACTGAATGGGCCTTACCTGAAACGCCAAGTGGCACTGACCCGTTAACTTCCCTTGTCTCATCTCACTGCA TTGGACTCTTCTTTATGTGTCTTTACTCTTTAGTTACACTGCATTACCCAGTGCATTAATTTTGTAAGGTTTAATTGTTC TTTTATTTTTGGGACAATAATCTACTCTTAGATTTTTTAGTTGATTTACTATCACATCTTGGTAGTTTGTTCAATTAGGG AAATTACACTTTCCTTCTGTTTTGACTTGAAATCTGAATAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAA CTTGGTTTATCTCCCTATAATGTTTATTCACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGTATATAAC ATATATCTTATGTTCCCTGGTTTGATTGTTTGAGGTACTTTTGGATCCTGTAGATATTGCATCTATACCCTCGGATAATT CTCAAACATTGCATGGATATGGGCATGACAGTTTTTCTGAAACTAGGGAGGGTATGAGTATGTAAAGATATATTTTTTTC TATTTTTAAATAATATACAAATAAGAAAGTAAATGAATCATTAGATAAAGACAATTTCCATAATTGTTCAATCCCCAAGT TCTCAACGAAACTGCATAAAATATGTCAAGTATACAAAGCAAGAATACCTGAAGAGGAGGGTATCAAGGGGTGAAATAGC AATTTGTTTTTTTTGGTAGCAAACAGATCTGGAATTTAATGAAAGAGAAATGAAACACAGTACTGGAGGTTCTGGAATCC TCCTAGCGGCACTGGGGAAAAATAAAGAAAACAAGAATAGTATAAGACACTTTCTTGAATTGAAGAGTGTCATGGTTATT TGTGTACATCCCATACAGTTATACCTTATTATGTCTTTGAAGGGCGCCTTGTTTTTTTATTTCAGGGATGTAACAACTGA TCTTCCTGAACTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTG CGTTTCCTGAAGTGGTTGTTTTTTTAATTACTTTTTTCTTTTGCATATACATTCTGCTTCAGCTTCTCAACCTGTGTCTC TTCCTTAACTTTCCAAATGCCTAAAATCTGTTTTGCTTGAAAATAAGTTCTGTTTTTGTTAAAGAAATTGACCATTCAAG TACTTCCACCTATCAACTCATGGTTTTAGGGGTGTTGGTCTCGGAAATTGATGTGGTGGTAGTAGAGCCTTTTTGATCAA ATGGTTTGAGGTTTGAGCATTGTTACCTCCATTCTTGATAATTACGGTGAATTTATTTACAAGGTAAAATTGGTTTGTAT GTTCTCACTATGCTTCAAGCCTAGAGGGCTATAACATGAGGGGGTGTCTAAATGACATAAAACTATCCGTGCTTTCACCA ACCTTAAGCCTTTAGAAGAGTTGGTCCTTACCAATTTTTGTGAATTATTTGATTGACCCCTAGATTTCAAGGTATATCCA AGGGATAGACCCTGTAACATTATCTTCCCACTACTAAATGGGGTGGAAGTGAGGGTGCATTTTTGTTTTTGTTGTCTAAG ACATTTCACGGTCTCGCACTGAACTCATTGCTAAACCATGCTTTGGACTTTGTGTGGGGTCAGGTGTGAGAGAACCAATG AAAGTTGGATGTGTAAGAGATCCCTTTAAAATAAGCATTTGCATTTTAGTTTTGTTGGTGAACTCTATTAGTCTATTAGT TTGCAATGCATTTATACTCAATATTTTAAAGCCAACAGTGTTATAGATTTTTTTTTTGGGAATTTGTCACGTAATGACAT TGCTAACTTATTTCTAAACAGTATATATGTAGTTTTTAATACCATTTTCTCTGCCTGATTTATAGGTAAGCATCATGAAT AATGTAAATACTTCTGTTGGTAACACATCTGTCGGGGAGGAAGAGTACACTTTGTATGGGAAATCTAACATTACCGAGAC CTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAATACCTCTCAGGTTTGCAATAGGCCAAAAA GTTTTTCTCTTTAGATCCTGCAGTCATCGTTCCTGAAAATAATAAATTTTATCCATTTCAGGCAGAGGTTTTGTATAAGC TTATAGAAGAATGTGCTGGTGTCAGAGGAGATGGCTCAGAAATTGTCCTTGACCTTTTTTGTGGGACCGGCACCATAGGT CTGACACTTGCAAGAAGGTAATCTCTTATATTCATCTGGTTTTCTTGTTTTTTAAGAAACTGTCAAACCATGAAAGTAAT GTCTTCTATTCCTATTTTGAACAGTGCAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGCTGATGCCCGTC TCAATGCCAAAATAAATGGTATACAAAATGCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGAATTTTGGGAGG AGTTTTCCTAAACCTGACATTGTCATATCAGGTTTTCTTTCTCTAAGTTTCATTATTCCTACTTATTCTCTATGTTTTAT TTATCTCTGTCAATTAGATTGGCTTGTGTTGGAAGCTATTTATTGACTTGAATATAGTCTCATTGTGTGACCTCAATGCA TCACACTTCTCACCATTATAAACTTTATGCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTAA ATCTTAAGGCCCCTCGAATAGTGTATGTGTCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCTCTGTCATGGT GTGGTATGTATCATTTTATCATACATTAGATTTTGTTAGTTGAGATCAAGTCATTTGAGTTGTTGGAGGTTTTGTGCAGG CAGAACTGAATCTGAAAGGATGTTACAAGTTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACACACCTCATATTGAG TGTGTTTGCCTTCTGGAGCTTTCTTAATCTGCGAATTGTGATCAATTAAACCTTTACATTTCAAGGTTGGGCACAATTTC ATTTTCTCTGCTACATATTAGACCTTGGATGGCTGATGAATTTTGAGTTACTGTTTTTATGAAACATCTAAGGCACTGTT CATTTGGAATAGATTTTGGAAAGACCTAGCAATTATCATTACACTTGAACTAATTCAAATTATATTTCTTAAAAAAGTTA TATTATTGATTGTTTGCTTATTTGCTTCTTCCTTTTAACGTCTATTTCTCTGTTTCTGACATGTCGTTCAGGCTATAACA AGGTTGACTCAAGATATAATTCAAGGTTGGGTCCTCAAGGTGATGATACATTTATGCTGCAAGGTGTGACTAATGCTTAG CCTGCCCAAAACTATTGCATCAGTGCTCCCAAAAGGTTGGAAAACACGGATCAATGACTACATTGTTGCAAACTTGTGAA AGTTTCTCAGCTATTTCTATTTATGCAAAGCCACCAACAGGTTGGATTAATGCCTAGCCTCGAAATGTGGATTACTGTTG AGTGTTGGTATCCCTCACCATGTGACAAGTCCATCATGAAATGGATCATGTGCTACACTTGTCAGATCCTTGCTTACTTA AAGAAAGTTGAGGTGCAAATCCTCATGGATTATTTCAGATGAGTATGTATTATTCGATGTGTGCATAAATTGATTGTATT CAGTTCTTATCTAGTTCTTCATAGTTTATATAGCTTCAAGACTAAATGCTGCTGTCATGTTGGGGAAAGGTGGCTGGAAT AGGCTTCCAATTCATTTTGATTTGTGTATTGATATTGTTATTCCTGGTTTTGCCTGAGATCAAAGGGGTACTAGGTTCTA GCTCTGAACCAATGCATGATGATATTCAATAGCTAATTTAATCACTATATATATCGAGATTATCCTTTCCCTCTATATTT AACTGGGTTCACGTAGTCAGTATTCAAGTGTTTC
CDS sequence (LotjaGi3g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGCAAGCTTCGACCATCATCTCACCGTCTTTC TCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAACCACCACCACCACCGCCGCCACCACCAGTT CCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTC ACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATTGGCCGTGTCACCCGCAAGAAGGG CAATTATGCTGAGGTTACTAAGGTGAAGACCTTAACTCCTCCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTT ACTGTGGGGGATGCAAGACTCAGAATTTGTCTTATGAAGCTCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATT ATACATGTGGGGAAGTTTTCTATCAAGGAACTGGAATTGCATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTT TCATTATAGAAATAAGATGGAATTCTCATTTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGG ATGCTGGTAGTGAAAATTATGCATTAGGATTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTA CTGCAAACTGATCCCGCTAACAAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAACTTGGTTTATCTCCCTA TAATGTTTATTCACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGGATGTAACAACTGATCTTCCTGAAC TTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTGCGTTTCCTGAA GTGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATCTGTCGGGGAGGAAGAGTACACTTTGTATGGGAA ATCTAACATTACCGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAATACCTCTCAGG CAGAGGTTTTGTATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGAGATGGCTCAGAAATTGTCCTTGACCTTTTTTGT GGGACCGGCACCATAGGTCTGACACTTGCAAGAAGTGCAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGC TGATGCCCGTCTCAATGCCAAAATAAATGGTATACAAAATGCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGA ATTTTGGGAGGAGTTTTCCTAAACCTGACATTGTCATATCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAA TTCCTGCTAAATCTTAAGGCCCCTCGAATAGTGTATGTGTCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCT CTGTCATGGTGTGGCAGAACTGAATCTGAAAGGATGTTACAAGTTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACA CACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTCTTAA
Protein sequence (LotjaGi3g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATISNLTNTLPLHLRKLRPSSHRLSLSTLACSLPEPTTTTETTTTTAATTSSYFPKRGQTLELVCESLAFKGKGLCKV TETGFVVMCDRALPGERFIGRVTRKKGNYAEVTKVKTLTPPRDVVDAPCVYAPYCGGCKTQNLSYEAQLSAKEEQVRDLI IHVGKFSIKELELHGIMKPIVRCDIQFHYRNKMEFSFGPQRWLPKESLHERREDAGSENYALGLHAPGFFDKVLNVDKCL LQTDPANKVLAAIQECWRDPQLGLSPYNVYSHLGFLKHLMLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPE VVSIMNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFC GTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSFPKPDIVISDPNRPGMHMKLIK FLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 52 | 112 | 61 | 6.85E-9 | ||
Gene3D | 52 | 135 | 84 | 3.2E-9 | – | |
PANTHER | 53 | 545 | 493 | 4.8E-199 | ||
PANTHER | 53 | 545 | 493 | 4.8E-199 | – | |
ProSiteProfiles | 56 | 116 | 61 | 10.655 | ||
TIGRFAM | 70 | 538 | 469 | 7.2E-89 | – | |
SUPERFAMILY | 125 | 544 | 420 | 3.82E-68 | ||
ProSiteProfiles | 136 | 546 | 411 | 71.977 | ||
Gene3D | 137 | 540 | 404 | 7.3E-101 | – | |
Gene3D | 190 | 367 | 178 | 7.3E-101 | – | |
Pfam | 355 | 544 | 190 | 7.2E-17 | ||
CDD | 395 | 493 | 99 | 9.74347E-14 | – | |
ProSitePatterns | 528 | 538 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. |
Expression pattern of LotjaGi3g1v0022800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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