Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PS50926

Source: ProSiteProfiles

Description

TRAM domain profile.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v1728760.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CDK5RAP1-like protein-like [Glycine max] gi\|356540793\|ref\|XP_003538869.1\|	Domains G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR023970 NON_CYTOPLASMIC_DOMAIN PF00919 PF01938 PF04055 PS01278 PS50926 PS51449 PTHR11918 PTHR11918:SF43 SFLDF00273 SFLDF00274 SFLDF00295 SFLDF00413 SFLDG01061 SFLDS00029 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00729 SSF102114 TIGR00089 TIGR01574 cd01335	33
Lj3g3v3755420.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CDKAL1-like protein-like [Glycine max] gi\|356542899\|ref\|XP_003539902.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006466 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR023970 NON_CYTOPLASMIC_DOMAIN PF00919 PF04055 PS01278 PS50926 PS51449 PTHR11918 PTHR11918:SF45 SFLDF00273 SFLDG01061 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01578 TMhelix TRANSMEMBRANE cd01335	29
LotjaGi2g1v0385400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp\|Q8H0V1\|CK5P1_ARATH CDK5RAP1-like protein; TrEMBL-Plants: tr\|G7KGB3\|G7KGB3_MEDTR Radical SAM methylthiotransferase, MiaB/RimO family protein; Found in the gene: LotjaGi2g1v0385400	Domains G3DSA:3.40.50.12160 G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006463 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR038135 PF00919 PF01938 PF04055 PS01278 PS50926 PS51449 PTHR43020 PTHR43020:SF2 SFLDF00273 SFLDF00413 SFLDG01082 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01574 cd01335	28
LotjaGi2g1v0385400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp\|Q2R1U4\|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr\|K7LNH5\|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400	Domains G3DSA:3.40.50.12160 G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR038135 PF00919 PF01938 PF04055 PS01278 PS50926 PS51449 PTHR43020 PTHR43020:SF2 SFLDF00413 SFLDG01082 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01574 cd01335	26
LotjaGi2g1v0385400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp\|Q2R1U4\|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr\|K7LNH5\|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400	Domains G3DSA:3.40.50.12160 G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR038135 PF00919 PF01938 PF04055 PS01278 PS50926 PS51449 PTHR43020 PTHR43020:SF2 SFLDF00413 SFLDG01082 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01574 cd01335	26
LotjaGi2g1v0385400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp\|Q2R1U4\|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr\|K7LNH5\|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400	Domains G3DSA:3.40.50.12160 G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR038135 PF00919 PF01938 PF04055 PS01278 PS50926 PS51449 PTHR43020 PTHR43020:SF2 SFLDF00413 SFLDG01082 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01574 cd01335	26
LotjaGi3g1v0022800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp\|Q8KGF9\|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr\|G7IHW5\|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800	Domains G3DSA:2.40.50.140 G3DSA:3.40.1350.30 G3DSA:3.40.50.150 IPR002792 IPR010280 IPR012340 IPR029063 IPR030391 PF05958 PS01231 PS50926 PS51687 PTHR11061 PTHR11061:SF30 SSF50249 SSF53335 TIGR00479 cd02440	18
LotjaGi3g1v0022800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp\|Q8KGF9\|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr\|G7IHW5\|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800	Domains G3DSA:2.40.50.140 G3DSA:3.40.1350.30 G3DSA:3.40.50.150 IPR002792 IPR010280 IPR012340 IPR029063 IPR030391 PF05958 PS01231 PS50926 PS51687 PTHR11061 PTHR11061:SF30 SSF50249 SSF53335 TIGR00479 cd02440	18
LotjaGi3g1v0556600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp\|Q6P4Y0\|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr\|I1LNN6\|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.12160 G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006466 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR038135 NON_CYTOPLASMIC_DOMAIN PF00919 PF04055 PS01278 PS50926 PS51449 PTHR11918 PTHR11918:SF45 SFLDG01082 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01578 TMhelix TRANSMEMBRANE cd01335	29
LotjaGi3g1v0556600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp\|Q6NS26\|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr\|I1LNN6\|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.12160 G3DSA:3.80.30.20 IPR002792 IPR005839 IPR006466 IPR006638 IPR007197 IPR013848 IPR020612 IPR023404 IPR038135 NON_CYTOPLASMIC_DOMAIN PF00919 PF04055 PS01278 PS50926 PS51449 PTHR11918 PTHR11918:SF45 SFLDG01082 SFLDS00029 SM00729 SSF102114 TIGR00089 TIGR01578 TMhelix TRANSMEMBRANE cd01335	29

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd01335	CDD	1	10.00