Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0022800 |
Transcript ID | LotjaGi3g1v0022800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr|G7IHW5|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2502172..2506969) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGCAAGCTTCGACCATCATCTCACCGTCTTTC TCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAACCACCACCACCACCGCCGCCACCACCAGTT CCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTC ACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATTGGCCGTGTCACCCGCAAGAAGGG CAATTATGCTGAGGTCCCATTTCCTTTTTCACTCTCCATTTCCATTTGCATTCATAGATATCTCAACTTTATCTCAATTA ATAGCAGTAGTGTAGAAGGGTCATGTGTTAGTGTAAGAGTGAAAGTTTAACAATGTGTTAGTGTGTTTGGATAAAGGTTG AAAATCAGTTGAAGTTGAAAATGTAGAAGGAAGAGATTGTTACATTGATTTCAATGTTTAAGTTGGCTTTGACTGTTAAA CAATCATACACTAACACTATAAGATGAACAATGGTTGATAATAAGAGTAGGTAGTATAGAAATTTTTAGAGGGGTAAATA ATTGAGAATTTTTTTCTCTTGAGTAAATGGCGAAAGTTTAACTCGTAATTCGGTAACAGTGTGTTTGGATAGATGTTGAA AGTCAGTAATAAGGTAGAAGGAAGAAATTGTTCCATTGGTTTGAAAGTCCTTTTAAGTTAGTTTTAACTGTTCGCCAAAC ATACACTAAGTAAGATTAACAATGTTAGTTGTAAGAGCAATGTAAATTTTTTGATGGCAATACAAAATTTGAATTTTTCT CTTGCGGGTGACTGTCCCATTTTTCAATTATGTAGTTCTGTCCCTGAGTGCAGGTTACTAAGGTGAAGACCTTAACTCCT CCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTTACTGTGGGGGATGCAAGACTCAGAATTTGTCTTATGAAGC TCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATTATACATGTGGGGAAGTTTTCTATCAAGGAACTGGAATTGC ATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTTTCATTATAGAAATAAGGTTAGTTGTGTAAGATTGTAGTAG TAGTTCTTTGTAATATCAAATATTATATGAGGATGGTGAATGAGTTCGGTTTTTATGCTTTATGCAGATGGAATTCTCAT TTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGGATGCTGGTAGTGAAAATTATGCATTAGGA TTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTACTGCAAACTGATCCCGCTAACAAGGTATG CAATGTTATTATTTTTTATTTAAAATCATAAGACTGTATAGGTGAGGCAAAGCTAGTCATTTTTCCCGATATGTTATCAG TATAAGTTAAAACGCTCATAACAAATAAGGGATGAAAAGCCCCAGGTTAGGCAATCCTAGATTCATATTGTAAATACAAA TCAGTCTGTTTTTCTTGGGTGTCTCTTATTTTCTCAAATTTGACTTGTGCCCGAACACCCTAGGCTACAGATATTTAAAA CTATTCTTGATCATTTTGGCAATTATACCCCATTAGAAAGTTAGATGTGTGTGCATTTGGGATGGGGTGGCTCTGGGGCA TGAGCTCTTTGCCTGAAACAGAAATTTGCTATAAGATGCCAGAGGCACTGATCCTTTGATAACTGAATGGGCCTTACCTG AAACGCCAAGTGGCACTGACCCGTTAACTTCCCTTGTCTCATCTCACTGCATTGGACTCTTCTTTATGTGTCTTTACTCT TTAGTTACACTGCATTACCCAGTGCATTAATTTTGTAAGGTTTAATTGTTCTTTTATTTTTGGGACAATAATCTACTCTT AGATTTTTTAGTTGATTTACTATCACATCTTGGTAGTTTGTTCAATTAGGGAAATTACACTTTCCTTCTGTTTTGACTTG AAATCTGAATAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAACTTGGTTTATCTCCCTATAATGTTTATTC ACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGTATATAACATATATCTTATGTTCCCTGGTTTGATTGT TTGAGGTACTTTTGGATCCTGTAGATATTGCATCTATACCCTCGGATAATTCTCAAACATTGCATGGATATGGGCATGAC AGTTTTTCTGAAACTAGGGAGGGTATGAGTATGTAAAGATATATTTTTTTCTATTTTTAAATAATATACAAATAAGAAAG TAAATGAATCATTAGATAAAGACAATTTCCATAATTGTTCAATCCCCAAGTTCTCAACGAAACTGCATAAAATATGTCAA GTATACAAAGCAAGAATACCTGAAGAGGAGGGTATCAAGGGGTGAAATAGCAATTTGTTTTTTTTGGTAGCAAACAGATC TGGAATTTAATGAAAGAGAAATGAAACACAGTACTGGAGGTTCTGGAATCCTCCTAGCGGCACTGGGGAAAAATAAAGAA AACAAGAATAGTATAAGACACTTTCTTGAATTGAAGAGTGTCATGGTTATTTGTGTACATCCCATACAGTTATACCTTAT TATGTCTTTGAAGGGCGCCTTGTTTTTTTATTTCAGGGATGTAACAACTGATCTTCCTGAACTTATGGTCAACTTTGTGA CCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTGCGTTTCCTGAAGTGGTTGTTTTTTTAATT ACTTTTTTCTTTTGCATATACATTCTGCTTCAGCTTCTCAACCTGTGTCTCTTCCTTAACTTTCCAAATGCCTAAAATCT GTTTTGCTTGAAAATAAGTTCTGTTTTTGTTAAAGAAATTGACCATTCAAGTACTTCCACCTATCAACTCATGGTTTTAG GGGTGTTGGTCTCGGAAATTGATGTGGTGGTAGTAGAGCCTTTTTGATCAAATGGTTTGAGGTTTGAGCATTGTTACCTC CATTCTTGATAATTACGGTGAATTTATTTACAAGGTAAAATTGGTTTGTATGTTCTCACTATGCTTCAAGCCTAGAGGGC TATAACATGAGGGGGTGTCTAAATGACATAAAACTATCCGTGCTTTCACCAACCTTAAGCCTTTAGAAGAGTTGGTCCTT ACCAATTTTTGTGAATTATTTGATTGACCCCTAGATTTCAAGGTATATCCAAGGGATAGACCCTGTAACATTATCTTCCC ACTACTAAATGGGGTGGAAGTGAGGGTGCATTTTTGTTTTTGTTGTCTAAGACATTTCACGGTCTCGCACTGAACTCATT GCTAAACCATGCTTTGGACTTTGTGTGGGGTCAGGTGTGAGAGAACCAATGAAAGTTGGATGTGTAAGAGATCCCTTTAA AATAAGCATTTGCATTTTAGTTTTGTTGGTGAACTCTATTAGTCTATTAGTTTGCAATGCATTTATACTCAATATTTTAA AGCCAACAGTGTTATAGATTTTTTTTTTGGGAATTTGTCACGTAATGACATTGCTAACTTATTTCTAAACAGTATATATG TAGTTTTTAATACCATTTTCTCTGCCTGATTTATAGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATC TGTCGGGGAGGAAGAGTACACTTTGTATGGGAAATCTAACATTACCGAGACCTTAAGAGGGCTTACATTCCAAATATCAG CAAACTCTTTCTTTCAAACAAATACCTCTCAGGTTTGCAATAGGCCAAAAAGTTTTTCTCTTTAGATCCTGCAGTCATCG TTCCTGAAAATAATAAATTTTATCCATTTCAGGCAGAGGTTTTGTATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGA GATGGCTCAGAAATTGTCCTTGACCTTTTTTGTGGGACCGGCACCATAGGTCTGACACTTGCAAGAAGGTAATCTCTTAT ATTCATCTGGTTTTCTTGTTTTTTAAGAAACTGTCAAACCATGAAAGTAATGTCTTCTATTCCTATTTTGAACAGTGCAA GACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGCTGATGCCCGTCTCAATGCCAAAATAAATGGTATACAAAAT GCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGAATTTTGGGAGGAGTTTTCCTAAACCTGACATTGTCATATC AGGTTTTCTTTCTCTAAGTTTCATTATTCCTACTTATTCTCTATGTTTTATTTATCTCTGTCAATTAGATTGGCTTGTGT TGGAAGCTATTTATTGACTTGAATATAGTCTCATTGTGTGACCTCAATGCATCACACTTCTCACCATTATAAACTTTATG CAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTAAATCTTAAGGCCCCTCGAATAGTGTATGTG TCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCTCTGTCATGGTGTGGTATGTATCATTTTATCATACATTAG ATTTTGTTAGTTGAGATCAAGTCATTTGAGTTGTTGGAGGTTTTGTGCAGGCAGAACTGAATCTGAAAGGATGTTACAAG TTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACACACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTCTTAA
CDS sequence (LotjaGi3g1v0022800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGCAAGCTTCGACCATCATCTCACCGTCTTTC TCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAACCACCACCACCACCGCCGCCACCACCAGTT CCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTC ACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATTGGCCGTGTCACCCGCAAGAAGGG CAATTATGCTGAGGTTACTAAGGTGAAGACCTTAACTCCTCCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTT ACTGTGGGGGATGCAAGACTCAGAATTTGTCTTATGAAGCTCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATT ATACATGTGGGGAAGTTTTCTATCAAGGAACTGGAATTGCATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTT TCATTATAGAAATAAGATGGAATTCTCATTTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGG ATGCTGGTAGTGAAAATTATGCATTAGGATTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTA CTGCAAACTGATCCCGCTAACAAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAACTTGGTTTATCTCCCTA TAATGTTTATTCACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGGATGTAACAACTGATCTTCCTGAAC TTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTGCGTTTCCTGAA GTGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATCTGTCGGGGAGGAAGAGTACACTTTGTATGGGAA ATCTAACATTACCGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAATACCTCTCAGG CAGAGGTTTTGTATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGAGATGGCTCAGAAATTGTCCTTGACCTTTTTTGT GGGACCGGCACCATAGGTCTGACACTTGCAAGAAGTGCAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGC TGATGCCCGTCTCAATGCCAAAATAAATGGTATACAAAATGCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGA ATTTTGGGAGGAGTTTTCCTAAACCTGACATTGTCATATCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAA TTCCTGCTAAATCTTAAGGCCCCTCGAATAGTGTATGTGTCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCT CTGTCATGGTGTGGCAGAACTGAATCTGAAAGGATGTTACAAGTTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACA CACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTCTTAA
Protein sequence (LotjaGi3g1v0022800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATISNLTNTLPLHLRKLRPSSHRLSLSTLACSLPEPTTTTETTTTTAATTSSYFPKRGQTLELVCESLAFKGKGLCKV TETGFVVMCDRALPGERFIGRVTRKKGNYAEVTKVKTLTPPRDVVDAPCVYAPYCGGCKTQNLSYEAQLSAKEEQVRDLI IHVGKFSIKELELHGIMKPIVRCDIQFHYRNKMEFSFGPQRWLPKESLHERREDAGSENYALGLHAPGFFDKVLNVDKCL LQTDPANKVLAAIQECWRDPQLGLSPYNVYSHLGFLKHLMLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPE VVSIMNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFC GTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSFPKPDIVISDPNRPGMHMKLIK FLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 52 | 112 | 61 | 6.85E-9 | ||
Gene3D | 52 | 135 | 84 | 3.2E-9 | – | |
PANTHER | 53 | 545 | 493 | 4.8E-199 | ||
PANTHER | 53 | 545 | 493 | 4.8E-199 | – | |
ProSiteProfiles | 56 | 116 | 61 | 10.655 | ||
TIGRFAM | 70 | 538 | 469 | 7.2E-89 | – | |
SUPERFAMILY | 125 | 544 | 420 | 3.82E-68 | ||
ProSiteProfiles | 136 | 546 | 411 | 71.977 | ||
Gene3D | 137 | 540 | 404 | 7.3E-101 | – | |
Gene3D | 190 | 367 | 178 | 7.3E-101 | – | |
Pfam | 355 | 544 | 190 | 7.2E-17 | ||
CDD | 395 | 493 | 99 | 9.74347E-14 | – | |
ProSitePatterns | 528 | 538 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. |
Expression pattern of LotjaGi3g1v0022800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…