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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022800 |
| Transcript ID | LotjaGi3g1v0022800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr|G7IHW5|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2502172..2506969) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGCAAGCTTCGACCATCATCTCACCGTCTTTC TCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAACCACCACCACCACCGCCGCCACCACCAGTT CCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTC ACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATTGGCCGTGTCACCCGCAAGAAGGG CAATTATGCTGAGGTCCCATTTCCTTTTTCACTCTCCATTTCCATTTGCATTCATAGATATCTCAACTTTATCTCAATTA ATAGCAGTAGTGTAGAAGGGTCATGTGTTAGTGTAAGAGTGAAAGTTTAACAATGTGTTAGTGTGTTTGGATAAAGGTTG AAAATCAGTTGAAGTTGAAAATGTAGAAGGAAGAGATTGTTACATTGATTTCAATGTTTAAGTTGGCTTTGACTGTTAAA CAATCATACACTAACACTATAAGATGAACAATGGTTGATAATAAGAGTAGGTAGTATAGAAATTTTTAGAGGGGTAAATA ATTGAGAATTTTTTTCTCTTGAGTAAATGGCGAAAGTTTAACTCGTAATTCGGTAACAGTGTGTTTGGATAGATGTTGAA AGTCAGTAATAAGGTAGAAGGAAGAAATTGTTCCATTGGTTTGAAAGTCCTTTTAAGTTAGTTTTAACTGTTCGCCAAAC ATACACTAAGTAAGATTAACAATGTTAGTTGTAAGAGCAATGTAAATTTTTTGATGGCAATACAAAATTTGAATTTTTCT CTTGCGGGTGACTGTCCCATTTTTCAATTATGTAGTTCTGTCCCTGAGTGCAGGTTACTAAGGTGAAGACCTTAACTCCT CCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTTACTGTGGGGGATGCAAGACTCAGAATTTGTCTTATGAAGC TCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATTATACATGTGGGGAAGTTTTCTATCAAGGAACTGGAATTGC ATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTTTCATTATAGAAATAAGGTTAGTTGTGTAAGATTGTAGTAG TAGTTCTTTGTAATATCAAATATTATATGAGGATGGTGAATGAGTTCGGTTTTTATGCTTTATGCAGATGGAATTCTCAT TTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGGATGCTGGTAGTGAAAATTATGCATTAGGA TTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTACTGCAAACTGATCCCGCTAACAAGGTATG CAATGTTATTATTTTTTATTTAAAATCATAAGACTGTATAGGTGAGGCAAAGCTAGTCATTTTTCCCGATATGTTATCAG TATAAGTTAAAACGCTCATAACAAATAAGGGATGAAAAGCCCCAGGTTAGGCAATCCTAGATTCATATTGTAAATACAAA TCAGTCTGTTTTTCTTGGGTGTCTCTTATTTTCTCAAATTTGACTTGTGCCCGAACACCCTAGGCTACAGATATTTAAAA CTATTCTTGATCATTTTGGCAATTATACCCCATTAGAAAGTTAGATGTGTGTGCATTTGGGATGGGGTGGCTCTGGGGCA TGAGCTCTTTGCCTGAAACAGAAATTTGCTATAAGATGCCAGAGGCACTGATCCTTTGATAACTGAATGGGCCTTACCTG AAACGCCAAGTGGCACTGACCCGTTAACTTCCCTTGTCTCATCTCACTGCATTGGACTCTTCTTTATGTGTCTTTACTCT TTAGTTACACTGCATTACCCAGTGCATTAATTTTGTAAGGTTTAATTGTTCTTTTATTTTTGGGACAATAATCTACTCTT AGATTTTTTAGTTGATTTACTATCACATCTTGGTAGTTTGTTCAATTAGGGAAATTACACTTTCCTTCTGTTTTGACTTG AAATCTGAATAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAACTTGGTTTATCTCCCTATAATGTTTATTC ACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGTATATAACATATATCTTATGTTCCCTGGTTTGATTGT TTGAGGTACTTTTGGATCCTGTAGATATTGCATCTATACCCTCGGATAATTCTCAAACATTGCATGGATATGGGCATGAC AGTTTTTCTGAAACTAGGGAGGGTATGAGTATGTAAAGATATATTTTTTTCTATTTTTAAATAATATACAAATAAGAAAG TAAATGAATCATTAGATAAAGACAATTTCCATAATTGTTCAATCCCCAAGTTCTCAACGAAACTGCATAAAATATGTCAA GTATACAAAGCAAGAATACCTGAAGAGGAGGGTATCAAGGGGTGAAATAGCAATTTGTTTTTTTTGGTAGCAAACAGATC TGGAATTTAATGAAAGAGAAATGAAACACAGTACTGGAGGTTCTGGAATCCTCCTAGCGGCACTGGGGAAAAATAAAGAA AACAAGAATAGTATAAGACACTTTCTTGAATTGAAGAGTGTCATGGTTATTTGTGTACATCCCATACAGTTATACCTTAT TATGTCTTTGAAGGGCGCCTTGTTTTTTTATTTCAGGGATGTAACAACTGATCTTCCTGAACTTATGGTCAACTTTGTGA CCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTGCGTTTCCTGAAGTGGTTGTTTTTTTAATT ACTTTTTTCTTTTGCATATACATTCTGCTTCAGCTTCTCAACCTGTGTCTCTTCCTTAACTTTCCAAATGCCTAAAATCT GTTTTGCTTGAAAATAAGTTCTGTTTTTGTTAAAGAAATTGACCATTCAAGTACTTCCACCTATCAACTCATGGTTTTAG GGGTGTTGGTCTCGGAAATTGATGTGGTGGTAGTAGAGCCTTTTTGATCAAATGGTTTGAGGTTTGAGCATTGTTACCTC CATTCTTGATAATTACGGTGAATTTATTTACAAGGTAAAATTGGTTTGTATGTTCTCACTATGCTTCAAGCCTAGAGGGC TATAACATGAGGGGGTGTCTAAATGACATAAAACTATCCGTGCTTTCACCAACCTTAAGCCTTTAGAAGAGTTGGTCCTT ACCAATTTTTGTGAATTATTTGATTGACCCCTAGATTTCAAGGTATATCCAAGGGATAGACCCTGTAACATTATCTTCCC ACTACTAAATGGGGTGGAAGTGAGGGTGCATTTTTGTTTTTGTTGTCTAAGACATTTCACGGTCTCGCACTGAACTCATT GCTAAACCATGCTTTGGACTTTGTGTGGGGTCAGGTGTGAGAGAACCAATGAAAGTTGGATGTGTAAGAGATCCCTTTAA AATAAGCATTTGCATTTTAGTTTTGTTGGTGAACTCTATTAGTCTATTAGTTTGCAATGCATTTATACTCAATATTTTAA AGCCAACAGTGTTATAGATTTTTTTTTTGGGAATTTGTCACGTAATGACATTGCTAACTTATTTCTAAACAGTATATATG TAGTTTTTAATACCATTTTCTCTGCCTGATTTATAGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATC TGTCGGGGAGGAAGAGTACACTTTGTATGGGAAATCTAACATTACCGAGACCTTAAGAGGGCTTACATTCCAAATATCAG CAAACTCTTTCTTTCAAACAAATACCTCTCAGGTTTGCAATAGGCCAAAAAGTTTTTCTCTTTAGATCCTGCAGTCATCG TTCCTGAAAATAATAAATTTTATCCATTTCAGGCAGAGGTTTTGTATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGA GATGGCTCAGAAATTGTCCTTGACCTTTTTTGTGGGACCGGCACCATAGGTCTGACACTTGCAAGAAGGTAATCTCTTAT ATTCATCTGGTTTTCTTGTTTTTTAAGAAACTGTCAAACCATGAAAGTAATGTCTTCTATTCCTATTTTGAACAGTGCAA GACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGCTGATGCCCGTCTCAATGCCAAAATAAATGGTATACAAAAT GCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGAATTTTGGGAGGAGTTTTCCTAAACCTGACATTGTCATATC AGGTTTTCTTTCTCTAAGTTTCATTATTCCTACTTATTCTCTATGTTTTATTTATCTCTGTCAATTAGATTGGCTTGTGT TGGAAGCTATTTATTGACTTGAATATAGTCTCATTGTGTGACCTCAATGCATCACACTTCTCACCATTATAAACTTTATG CAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTAAATCTTAAGGCCCCTCGAATAGTGTATGTG TCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCTCTGTCATGGTGTGGTATGTATCATTTTATCATACATTAG ATTTTGTTAGTTGAGATCAAGTCATTTGAGTTGTTGGAGGTTTTGTGCAGGCAGAACTGAATCTGAAAGGATGTTACAAG TTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACACACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTCTTAA
CDS sequence (LotjaGi3g1v0022800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCACCATTTCGAACCTGACCAACACTCTGCCACTTCACCTCCGCAAGCTTCGACCATCATCTCACCGTCTTTC TCTCTCCACACTCGCTTGCTCTCTCCCCGAACCCACCACCACCACCGAAACCACCACCACCACCGCCGCCACCACCAGTT CCTATTTCCCAAAGCGTGGCCAGACCCTGGAGCTGGTGTGCGAGTCACTCGCTTTCAAAGGCAAGGGCCTCTGCAAGGTC ACTGAAACCGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATTGGCCGTGTCACCCGCAAGAAGGG CAATTATGCTGAGGTTACTAAGGTGAAGACCTTAACTCCTCCCCGTGATGTTGTTGATGCTCCTTGTGTCTATGCTCCTT ACTGTGGGGGATGCAAGACTCAGAATTTGTCTTATGAAGCTCAACTCAGTGCTAAGGAGGAGCAGGTCCGCGACTTAATT ATACATGTGGGGAAGTTTTCTATCAAGGAACTGGAATTGCATGGCATTATGAAGCCCATTGTTCGTTGTGATATTCAGTT TCATTATAGAAATAAGATGGAATTCTCATTTGGTCCACAGAGATGGTTGCCTAAAGAATCCCTTCATGAAAGACGTGAGG ATGCTGGTAGTGAAAATTATGCATTAGGATTGCATGCTCCCGGCTTTTTTGATAAAGTTCTAAATGTTGACAAATGCTTA CTGCAAACTGATCCCGCTAACAAGGTACTTGCAGCTATTCAAGAATGTTGGAGAGATCCACAACTTGGTTTATCTCCCTA TAATGTTTATTCACACTTAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGGATGTAACAACTGATCTTCCTGAAC TTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGCTGAAGCCCCTAGTTGATAAAGTTTCTGCGTTTCCTGAA GTGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATCTGTCGGGGAGGAAGAGTACACTTTGTATGGGAA ATCTAACATTACCGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAATACCTCTCAGG CAGAGGTTTTGTATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGAGATGGCTCAGAAATTGTCCTTGACCTTTTTTGT GGGACCGGCACCATAGGTCTGACACTTGCAAGAAGTGCAAGACATGTTTATGGCTATGAAGTAGTTCCTCAAGCTATCGC TGATGCCCGTCTCAATGCCAAAATAAATGGTATACAAAATGCAACATTTGTCCAGGGGGATCTCAATAAAATTGATGAGA ATTTTGGGAGGAGTTTTCCTAAACCTGACATTGTCATATCAGATCCCAATCGCCCAGGAATGCACATGAAGTTGATTAAA TTCCTGCTAAATCTTAAGGCCCCTCGAATAGTGTATGTGTCGTGTAATCCCGCCACATGTGCCCGTGACCTTGATTATCT CTGTCATGGTGTGGCAGAACTGAATCTGAAAGGATGTTACAAGTTATTAAGCCTGCAACCAGTTGACATGTTTCCGCACA CACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTCTTAA
Protein sequence (LotjaGi3g1v0022800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATISNLTNTLPLHLRKLRPSSHRLSLSTLACSLPEPTTTTETTTTTAATTSSYFPKRGQTLELVCESLAFKGKGLCKV TETGFVVMCDRALPGERFIGRVTRKKGNYAEVTKVKTLTPPRDVVDAPCVYAPYCGGCKTQNLSYEAQLSAKEEQVRDLI IHVGKFSIKELELHGIMKPIVRCDIQFHYRNKMEFSFGPQRWLPKESLHERREDAGSENYALGLHAPGFFDKVLNVDKCL LQTDPANKVLAAIQECWRDPQLGLSPYNVYSHLGFLKHLMLRSGRDVTTDLPELMVNFVTSSYKPELLKPLVDKVSAFPE VVSIMNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTSQAEVLYKLIEECAGVRGDGSEIVLDLFC GTGTIGLTLARSARHVYGYEVVPQAIADARLNAKINGIQNATFVQGDLNKIDENFGRSFPKPDIVISDPNRPGMHMKLIK FLLNLKAPRIVYVSCNPATCARDLDYLCHGVAELNLKGCYKLLSLQPVDMFPHTPHIECVCLLELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 52 | 112 | 61 | 6.85E-9 | ||
| Gene3D | 52 | 135 | 84 | 3.2E-9 | – | |
| PANTHER | 53 | 545 | 493 | 4.8E-199 | ||
| PANTHER | 53 | 545 | 493 | 4.8E-199 | – | |
| ProSiteProfiles | 56 | 116 | 61 | 10.655 | ||
| TIGRFAM | 70 | 538 | 469 | 7.2E-89 | – | |
| SUPERFAMILY | 125 | 544 | 420 | 3.82E-68 | ||
| ProSiteProfiles | 136 | 546 | 411 | 71.977 | ||
| Gene3D | 137 | 540 | 404 | 7.3E-101 | – | |
| Gene3D | 190 | 367 | 178 | 7.3E-101 | – | |
| Pfam | 355 | 544 | 190 | 7.2E-17 | ||
| CDD | 395 | 493 | 99 | 9.74347E-14 | – | |
| ProSitePatterns | 528 | 538 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. |
Expression pattern of LotjaGi3g1v0022800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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