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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021600 |
| Transcript ID | LotjaGi4g1v0021600.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT2G30950.1 FtsH extracellular protease family; Swiss-Prot: sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7GJK4|A0A1J7GJK4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0021600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2645732..2648541) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTTGGTAATGGTTTATCTACACGGGGTAACAGAATTACTCTCGGTAAGGACTTCAATGGAAGATATCTATTCTCATC TTGGAGGTTGAACAAGGCACCAAAAGCGTTTTCGGTAAAGGCGTCTTTAGACCAAAGCCAGAACGGAGGGAGAAGGGAGC TTCTTAAGTTGCTTGGAAATGTGGGAGTTGGATTACCAGCATTATTGGGAGGTGGCAAGGCTTATGCTGACGAACAAGGG GTTTCCTCCTCCAGAATGTCTTATTCTAGGTTTCTAGAGTATTTGGACAAGGACAGGGTTAACAAAGTGGATCTGTATGA GAATGGAACCATAGCTATTGTTGAGGCAGTTTCTCCTGAGTTGGGTAACAGGTTGCAGCGTGTTAAGGTTCAACTTCCTG GACTTAACCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCACAATGCTCAAGAGGATTCAGGT TCTCTTTTGTTTAACCTGATTGGGAATCTGGCTTTCCCTATAATCTTGATTGGAGGGTTGTTCCTTCTCATGAGGAGGCC CGGTGGGATGGGAGGTCCCGGTGGCCCTGGATTTCCTCTTACTTTCGGTCAATCTAAAGCCAAGTTTCAGATGGAACCAA ACACTGGAGTGACATTTGATGATGTTGCCGGGGTGGATGAAGCCAAGCAGGATTTTATGGAAGTGGTGGAGTTTCTCAAG AAGCCTGAGAGGTTTACTGCTGTCGGAGCTCGCATACCTAAAGGAGTTCTTCTTATTGGTCCTCCCGGAACTGGGAAGAC CTTGTTAGCCAAGGCTATTGCCGGTGAAGCCGGAGTTCCGTTTTTCTCAATATCTGGTTCTGAGTTTGTTGAGATGTTTG TTGGTGTTGGCGCTTCTCGAGTCCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATGAA ATTGATGCTGTTGGGAGACAAAGAGGGACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTT GACAGAAATGGATGGGTTTGAGGGTAATACCGGTATCATTGTCGTTGCTGCAACTAACAGGGCTGACATTCTTGACTCTG CCTTACTGAGACCTGGCCGGTTTGATAGACAGGTATGGTTATATTCCGAAACGCTTTATGCTTTAAACTGATGAGTTAAT TAAATACTGAAGTAACTGAACATACTGTTTTGCAGGTAATGGTTGATGTTCCGGATGTAAGGGGAAGGACTGAGATCCTA AAGGTTCATGGTAGCAACAAAAAGTTTGAAGCTGATGTCTCTCTTGAAATAATTGCAATGAGAACACCTGGTTTTAGTGG AGCTGATCTTGCAAATCTCTTGAACGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACAGGGATTTCATCTAAAGAGA TTGATGATTCTATTGATAGGATTGTAGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCA TATCATGAAGTTGGGCATGCCATTTGTGGGTAAGTAATCAGACCCTCATATTGTTTTTCAAGTAAATGTTGTGTAAGATT GTGGTGGAAGCAAGGTGTTGTTTTCTAAATGACTTCATGTTACGCGAAACAATCCCCATAAAGTTGTTCTTGAAATCATG TACTTATCTCTGCTTGCAGAACTTTGACCCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGTGGACAAGCC CGGGGTCTTACATGGTTCATTCCTTCTGATGACCCAACTTTGATCTCAAAACAACAACTCTTTGCAAGAATTGTTGGAGG GTTAGGTGGTAGGGCTGCAGAGGAAATAATTTTTGGTGAGCCAGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAA TCACTGGTTTGGCAAAACAGGTACTTTTATATGGATTTTGTTTCAAATTTATCTCCTTCTCATTCCTTTAATTTCTGTGG GGTTGAAGATGCTGATGTTTTATAGCTGAAAAAATTATAGTATGATTCATTTTGGTACTATTGTGTCAGGCATTTGTTGA TTGGTGAGATTGGCAATAAGTTTCCTTCATATGATTTCTTGAGTAATGAAACTTAAAGCTTTTGATTTACATTGAATATT GGTAATTTACATATTGAAGGAAGGACTTCTAATTTTCCAAATAAAATATTAACCCACAAAATTTGGTTTTTAATCAAGCG CAACCGCATCGAGTGATCTTGATACATGTAACCAACCTCACTAGCATAAGACTTTGTTGTTGATGATGTTGTTGATTCCC CCCCCCCCCCCCCCCTCTTTGATCTTTCTATGCTGCTTCAACAAATGTAAATGATCCTCTTGCAGATGGTAACCACATTT GGAATGTCTGATATTGGTCCTTGGTCACTCATGGAAGCAGCACAAAGTGGAGACGTTATCATGAGAATGATGGCAAGGAA CTCGATGTCAGAAAAGCTTGCAGAAGACATTGATGCTGCTACCAAGAGGATCTCAGATGATGCATATGTAATCGCACTGC GCCATATAAGAAACAACCGCGAGGCAATTGACAAGATTGTGGAAGTCCTTCTGGAGAAAGAGACATTGAGTGGAGATGAA TTCCGCGCTATACTCTCTGAATTTGTTGAAATCCCAGTAGAAAATCGGGTTCCTCCTTCTAAGACATTAGCAGCAACTGT TTGAATAGCCTATATGGCTATATGTAATATGTTTAATGTATCATCTCAGAATACGCAATACCTCCTCTACAGCCTGCACT AAATTTGTGA
CDS sequence (LotjaGi4g1v0021600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTATTCTAGGTTTCTAGAGTATTTGGACAAGGACAGGGTTAACAAAGTGGATCTGTATGAGAATGGAACCATAGC TATTGTTGAGGCAGTTTCTCCTGAGTTGGGTAACAGGTTGCAGCGTGTTAAGGTTCAACTTCCTGGACTTAACCAAGAGC TCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCACAATGCTCAAGAGGATTCAGGTTCTCTTTTGTTTAAC CTGATTGGGAATCTGGCTTTCCCTATAATCTTGATTGGAGGGTTGTTCCTTCTCATGAGGAGGCCCGGTGGGATGGGAGG TCCCGGTGGCCCTGGATTTCCTCTTACTTTCGGTCAATCTAAAGCCAAGTTTCAGATGGAACCAAACACTGGAGTGACAT TTGATGATGTTGCCGGGGTGGATGAAGCCAAGCAGGATTTTATGGAAGTGGTGGAGTTTCTCAAGAAGCCTGAGAGGTTT ACTGCTGTCGGAGCTCGCATACCTAAAGGAGTTCTTCTTATTGGTCCTCCCGGAACTGGGAAGACCTTGTTAGCCAAGGC TATTGCCGGTGAAGCCGGAGTTCCGTTTTTCTCAATATCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGCGCTT CTCGAGTCCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGG AGACAAAGAGGGACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGG GTTTGAGGGTAATACCGGTATCATTGTCGTTGCTGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTACTGAGACCTG GCCGGTTTGATAGACAGGTAATGGTTGATGTTCCGGATGTAAGGGGAAGGACTGAGATCCTAAAGGTTCATGGTAGCAAC AAAAAGTTTGAAGCTGATGTCTCTCTTGAAATAATTGCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAATCT CTTGAACGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACAGGGATTTCATCTAAAGAGATTGATGATTCTATTGATA GGATTGTAGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCAT GCCATTTGTGGAACTTTGACCCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGTGGACAAGCCCGGGGTCT TACATGGTTCATTCCTTCTGATGACCCAACTTTGATCTCAAAACAACAACTCTTTGCAAGAATTGTTGGAGGGTTAGGTG GTAGGGCTGCAGAGGAAATAATTTTTGGTGAGCCAGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATCACTGGT TTGGCAAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGAAGCAGCACAAAGTGGAGA CGTTATCATGAGAATGATGGCAAGGAACTCGATGTCAGAAAAGCTTGCAGAAGACATTGATGCTGCTACCAAGAGGATCT CAGATGATGCATATGTAATCGCACTGCGCCATATAAGAAACAACCGCGAGGCAATTGACAAGATTGTGGAAGTCCTTCTG GAGAAAGAGACATTGAGTGGAGATGAATTCCGCGCTATACTCTCTGAATTTGTTGAAATCCCAGTAGAAAATCGGGTTCC TCCTTCTAAGACATTAGCAGCAACTCCTGCACTAAATTTGTGA
Protein sequence (LotjaGi4g1v0021600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYSRFLEYLDKDRVNKVDLYENGTIAIVEAVSPELGNRLQRVKVQLPGLNQELLQKFREKNIDFAAHNAQEDSGSLLFN LIGNLAFPIILIGGLFLLMRRPGGMGGPGGPGFPLTFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERF TAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVG RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVMVDVPDVRGRTEILKVHGSN KKFEADVSLEIIAMRTPGFSGADLANLLNEAAILAGRRGKTGISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGH AICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITG LAKQMVTTFGMSDIGPWSLMEAAQSGDVIMRMMARNSMSEKLAEDIDAATKRISDDAYVIALRHIRNNREAIDKIVEVLL EKETLSGDEFRAILSEFVEIPVENRVPPSKTLAATPALNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 585 | 585 | 0.0 | – | |
| PANTHER | 1 | 585 | 585 | 0.0 | – | |
| Phobius | 1 | 76 | 76 | - | – | |
| Hamap | 2 | 590 | 589 | 34.794 | ||
| Phobius | 77 | 98 | 22 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| TIGRFAM | 80 | 574 | 495 | 5.3E-211 | ||
| Phobius | 99 | 600 | 502 | - | – | |
| Gene3D | 124 | 304 | 181 | 1.3E-68 | – | |
| SUPERFAMILY | 129 | 374 | 246 | 2.63E-69 | ||
| CDD | 146 | 303 | 158 | 1.8683E-26 | – | |
| SMART | 167 | 306 | 140 | 8.5E-25 | ||
| Pfam | 171 | 302 | 132 | 6.4E-45 | ||
| ProSitePatterns | 274 | 292 | 19 | - | ||
| Gene3D | 305 | 381 | 77 | 1.0E-25 | – | |
| Pfam | 326 | 368 | 43 | 2.9E-11 | ||
| Pfam | 385 | 573 | 189 | 2.1E-66 | ||
| Gene3D | 386 | 586 | 201 | 3.2E-64 | ||
| SUPERFAMILY | 386 | 582 | 197 | 3.27E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0021600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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