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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085100 |
| Transcript ID | LotjaGi4g1v0085100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11217137..11220939) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACAGTTAGTTCCTCCTCCGATCTATGCGAATCGGTCTTCTCAAACAT GATTTCATCATCAAAACCAATAATCAATTCACTAGTAGTATTAGCATATGCATGATTTTATGTTAAGACTGTTGTTTATT GAAATTCATGATTTGTTATATGTATAGGGTTAGTGGTAGGTGGTGATTTTGTTTAGAAATTGATTGATGGCTCATGCTCG GTGTGTTTGTGTTGTGTTTGTAGCGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCTGTGGCTTTTCTGG AGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAGCCTGAACAAGGAA TTTGGGTATTTGTTTGAGTTTGTGTTGAGATTAGCTTAATTGTGATTGTGTTCGTGATTGTGAATGATCTTTGCTTTGTG CAGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGGCAAAGGTGAAAGCTC AGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTAACAGATACTCGGCTTATTCTGCTTTGACTTGAG AGGATCATGATATTTTTTGATCAGATTGAATTGATTTATAATTGTAGAATGTAGATCACAAGAATAAGAGGTTGTAATAG AAATTATGAAATGATTGTTTTTAACTGTTATGAAAATAAAAACAACAGAGGCCACTGAACACAAAGGGTGGATTTTTTAG AAAACCTGAACTTGTGATTACTTATTAAATTTGTTGGGCCAGCATTTTATCAAATTTTGTGCATTGTGCACCTGCTGCGC TGAGTCTGTAATACTTGTTTGGCAGCAATTCTTTTCATGTGTTAAACGACAGATGGCTTTGAAATGTGAGATACATGCAT AATTTTATGTGTTGTGTTTAGTTGGGCGTACTTTAAGTTTTCCAGTTCTATTAGCGGGGGTAATTAGGGTTTGTTGAGTT CTTGTAACCCTACAGAGACCCTGAAAATCGAATTAAGATTTGTGCTACCTCCCTTGGACCGTCGATGAGGCTCCACCAGC CACCAATGAGCCTCTGATTCTCGCCTCCTTCTTCCTCCTCCTTTTCCTCCTTCTCTGTCCTGCTTCTTCCTCCTTCCTCC TCCTCCTTCGGTGTAGCGTCCATCCTGCTTTACGCTATACTGCTAAGTGCTAAAGCGTTTTTTGGGCTTGCCGCTCCGCT CCGCTATCCGGGGTTGACAAACCTGTAATTACTGATTCAGTTCCCTACCTCTGCACCAGAGTAGAGCAGAATTGGGACAA GATGAACAATTTCTTCAGAATCACTCACAATCACTTGTATTTGAGAGACTAGCACCATAGCACTCACCTCACTAGATCTG ATTAACAACAAATGACCAACCTCCTCTCCCTCTCAACCCCTCTTCCTATTTATAGCATACGTACCTTATCTAGTGATCCA ATTACCTAACTATTATTCTATTCACTAACTGTACCTATCACTGCAAGGGAAATGAAGAAGGGGAAGAGGGATGTTGCCTG AGAATATTTATTGACTACAGATCTCAAATCAAATAAAATTATATTTCGGTGTCCACTAGCAATGTGGGGCAGGGCATTGG CAAGAACTTCCATTTAGTAGGAAGGAGCACACAAAATTTATGACTTATGATATGAGTTCACTTGGTTACCTTACTTTTAA TGCTATGCACCTAAGGGTTTTTACTTTTTATTTATTAGCTCCTATATAAGTTGATTGTGATATTTGTTTATGACTTATGG TTATGGCTATGATTTTGTTTTGTGAGACATAAGTTCCGCAGTCTATCCTAGTATGAAATTATTACATTAAGTTCTTATAA TAGGTTAATGAAACCTCTATTTGCAGTTTATTTGCTGCCAAAAAGAAAATTGCTTGTCTAACTGAAATATAGATCACATG TTACTATATGATCACTTTAAATCCAAAATGTAATGATAAAGAATATCTTATTGATATTATTCAAGATCCACATCTGACAT GCCTAATTGAATTGATTCATTAAATTGAATCAATTCAATACATTTCAAATATTAGTCAAGAATATCTCATTTGTACCAAT AGGTGCTATATTGGATTTCAGTAAGAAAAGTCAGTTCAGTTAAATTACTGTTCTTCTACCTCTGGTTTGCTGATGATACT ATTATTGTATTATCCTTTTTGAACGAGGATGACTTCTATACAAAATTTATCTATTCTTAAGTTCTTCAAGTTATCACTTA CCTAAATGAATCTGCTAATGTTAGTTTGTTTGATAACTAATACAATGTTTACTGACTTCTCATGTCTTTAGTTAATATTA GTTATTTGAAAACTAATACAATGTTTGTCTTTTTCTCTTGTTGAAATGTATCAAAATCTAAATCTTAGGGAAGTTTTGGA GGCACAGAAATTCTGCTCCTCATAATAGTTAACAATTCATCTACTGTACTTGGGTTGTAGCTGTATTTTGCTTTGAATAT GACAATTTAAGTTTACTTCTGTTTTCTCAGCTAAAAACTAAAAATAAGCCAAGATATATTTGTTGCAGTTAATTGGCCTG CAAACTAAATTTGAATATGACTATTTAAGTTTACTTCTGTTTCAAAGGAAAATTGAAACTGCGGCATTTCAGTGACATAT GAAGGAGCAAATTCTTGTCTCTCTTTTAAATGCCACAGTGAAAATTTATTATTCCATAGGTATGCTACATAAAAGCAGAG ATCAAACAAGTTAATACACATTAGAAGACATAAATGTTATTCAAGTTTTTAGCTTCTCATACATTCAATCAGATTAAGAT ATCTAATGCATAAGGACACATTCATTAAGATTGTATTGACATGTTCGTACTTCAATGTAGGTTCTGGACAGGGGGGAAAA GATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGGTTAGTATTTTGTGCGCTTGAAAGTTCTTGAACTTGT GGAAGTTTTTAAATGCTTCAGGATCAGTAGTAACTATTTTTTATTTAGTTTCTTTTTTATTGGTGCATCGGAAGGATAAA TTGCACCATCCAGGGATTGATCCCTGGACCTCCCCCACCCTAACCCATATGCCCCAGCTCTTGCCACTTGAGCTATCATT CGGGGACTTTCTATTTAGTTTCTAAAACTCTTCTGATTATATTTTGTATTCTATTTAGTGTCAAAAAGCATTTCTTATGA TACTTGACACCCTATTGGAAGATCTTTCCCCCCCTTTTCACACCACTCAAAAGAAAAAGGAGGGGTTAAGATGCTAAAAA TCGTCACTTTATCGAAGCAAACTGTTTTTCACTTGTTTCCTTTTCGTCATTTTGGGCAGGCACAAGACTTCAGGAATTCT GGGACCAAAATCCGCCGAAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTGTTGGCGATATTGATAGCCCTGAT TCTCATCATAGTCCTTCCCATCGTCCTTCGTAAATGAAAATAAACCTCATTCTCAGTCATTTTATCTTGTTATTTCGACC TTATTGTGATTATGCGAGGAAAGGTATCAAATGTATGACATGA
CDS sequence (LotjaGi4g1v0085100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACACGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCT GTGGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAG CCTGAACAAGGAATTTGGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGG CAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGGGAAAAG ATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATCCGCCG AAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTGTTGGCGATATTGATAGCCCTGATTCTCATCATAGTCCTTC CCATCGTCCTTCGAAAGGTATCAAATGTATGA
Protein sequence (LotjaGi4g1v0085100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQNQRSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVP VAFLERVKDDFVAKYGGGKAATAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEK IELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLPIVLRKVSNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 195 | 195 | - | – | |
| Gene3D | 2 | 130 | 129 | 4.8E-45 | – | |
| PANTHER | 4 | 216 | 213 | 5.1E-140 | – | |
| PANTHER | 4 | 216 | 213 | 5.1E-140 | – | |
| SUPERFAMILY | 8 | 123 | 116 | 2.23E-28 | ||
| CDD | 9 | 123 | 115 | 4.87655E-36 | – | |
| ProSiteProfiles | 12 | 116 | 105 | 28.435 | ||
| SMART | 33 | 115 | 83 | 3.7E-28 | ||
| Pfam | 36 | 113 | 78 | 5.4E-25 | ||
| SUPERFAMILY | 127 | 194 | 68 | 9.42E-24 | – | |
| Gene3D | 131 | 216 | 86 | 3.4E-30 | – | |
| Pfam | 131 | 216 | 86 | 1.4E-32 | ||
| ProSiteProfiles | 132 | 192 | 61 | 19.096 | ||
| CDD | 132 | 190 | 59 | 3.85489E-27 | – | |
| PRINTS | 137 | 156 | 20 | 1.8E-20 | ||
| ProSitePatterns | 150 | 169 | 20 | - | ||
| PRINTS | 157 | 176 | 20 | 1.8E-20 | ||
| PRINTS | 193 | 212 | 20 | 1.8E-20 | ||
| Phobius | 196 | 217 | 22 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 218 | 223 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0085100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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