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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0310500 |
Transcript ID | LotjaGi4g1v0310500.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A072V2Z1|A0A072V2Z1_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi4g1v0310500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68672468..68677000) extracted from Lotus japonicus Gifu genome v1.2.
TATTGCACTATTTCAAATCATTCTGCTCTAGTTTCCTATGTTCTTTCAGTTTTTATTGGAGTTTGTACCAATTTGAAGTT AACAAGATGTTGACAACATTTTCATTTCTACATACCTGAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTG AAGAGAACATGTCTAAGAAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATT ATGTGGCTTGGTCGCTCTGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGG AATTGGTGGCCTTCCAAAGGTATACCTAGATCCCTGCATGAAGAAGTTTCTTGCTCACTTGTCACATGTGGATAAACTAG AACCTTTTTTAATGTATCTAATGGTTACTACTTACTGGTGATAAAGTTTCTATTTTTCCCACCCTTTTTTGTTTTCCTTT TACATTGAGTTTTGTCTATTTCCTTGCAGTCGATTCTATCTGCTACGATGAAGAAATAGTCTATATCAGTTGTTTATAGT TGTTATCATTGGTTAATATTCACGACTCATTATTTTGGTTGACAGTTTCTTACAGATAAAAATGTTTCTGGGTAAAGAGT CATTGTTTGGCTTTCATTTTCCTCATGCATGACACCCACACACCCACACGCATGCACACGTACCGCACACGTACTCATGC TAACTATTATATGTAATTGTTTGATGTTTGTAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTAC TCTTGCTTTGCATGTGATTGCGGAGGCACAGAAGCAAGGAGGTTATCTCTATATGCTACTTGACAATGATAATTGTGATG TGTAATGCCTTTTGGTTGTATTGGATATAGGATCTAACTTATTTAGATGTGAGATTGAGTCATGTGCCATAACCTTAACA ACTATCATTCTTTTAGTAGTCATGGACTCGTGATTGATTAAATCCCCCCCCCCCCCTACTTAGTTGGGGACTTGGGGTAA TACTTTGCATGGACTTCTTAACGAATGCTAAACCCTGGTTCTGAGGAGGACCTTTAACTAATATTATTTGGAAGTGGCAA AGTTGCGATTTAATTCTATAAGAGTTCTCATTTTCTATATCCTTATTTCTACGATGTGCCAGTAATTTGTAGGTGCTACG CTGCAAGCTGATTTCCAGTAGTAAATAGGGTTATGTCCTGTTCTTCACTTCTCGTTACTTTACTAGAGAATGAGAAAAGC ATATTTTTTCTAATTTAGGTGTTGACTTTTGCAAAAACTAACCAACCGCATGAAGTGTGTGTGAGCGTGATGCTAGCATT TCTCATGTTTTAAAAGTGAGTTTAGACTTTTCAAGAATTGATTTTATTTGAAAGGTAAAGTAGAGTCACTCTTTAAGTGT AAATATAAAAATATTTTGTCAAAAAATTATTCTTCATACACCCACAACCTATTCTATTTTCCTTGAAAGCTAAACATTTT CACTTCTTTCAAAATCAATTCTACCCAGCACAAAATTGATTTTATTAGTCAAAATTAATGCCAAACGAATTCATTTACTT TGGGACCCCATTTTATTTGCCGCAGATGGGAATTGGGGAGTAAACAAACATGCACTTCAGCACTTGTGGATAATCTCTTC AAGGGTTTTGTAGTTGCTCTATGTGGATATTGATTTGTTTGTTTCATGCAGGCTATTGTGCCTTTGTTGATGCTGAGCAT GCCCTAGATAGGACACTTGCAGAGTCTATTGGTGTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACA AGCTCTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTAAGAGTATGGAGCT CCTTTTCTTTTGTTTATGTTTATACTTTTTTGGCTGTCATTTGTTTATTATTGTACTGGTAGGTGTATTAATACCCTTGT CTGTTGAAAGACTGAGTAAACCAGGTTATGAATTTCACACTTTCAGCTAGACTGATTTCAGCCAATCACCATTTACCATT GAATTTTACCTAGTTTTTTAAAATACTCATCCACTCATCCTACAAAAGGTATTCAATTTGATATAAGCATGTGTTGGTGG ATTCATATATCTAATTCTTGTATTTCCTTATGCTTATCACCTGTATATATAAAGTTAAGGGAGCATGAGATATGTGATTT AGAAACTGAAATCTTGTTCTAGAATGTTCGCATTTTTTTACCAGACTTGGGGTTAACTTTTGTTCATTCTTTAATTAAAT AGTTATATTTTGCATTTTGTCTTCTTGAACCCACATTTGCACAGACTTGAGTTTTATATAAAGGTGGAAACTGGAAAGAA TGAGTAAAATTTTAGTCTTCCTCTTTTACCTTTCTTCGTACTTCTCCCATTTGTTTTTATTTTAACTCCATGCGGTTTAC ATTCTGTCATTTAAATCTTGTTTCATTGGTTTAAATATCTCTTATGCTCTAGGTCTTTGTCTACTAACTTTTTGCAGTCT TTTCTCTAATAGGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGC TAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAAAGTATATTGATTTTCATAAACCAGG TACCAACTAAAGTTGTTAATTGCAGTATTGCAAGTTTTCATTTGGTCACATTGTGAATATCATTTGATATTAACCTGAGC TATTTAGCACGTATAGGAAATTTTTGTGTTAGTCTGTCCTCCACTAATTTCATCTTGGTCTATGACTATGTTTCCTTGAC TTATGCTGAGCAAAGTTGTTTTCACTTATCATCTATTGGTTGAGCCAATTTTGTGTTCATTATTACAAGTTCCTCTATTG TCATTCATATGTTCTTTGTGGATAACTGGATAATATTGAGCTTCTTCTCCAATTCTGTTCTGCTTCTCTACTCTTGCTAA TGTAATTGCTTGTTCCAGTTCATCCTTTTTTATGCCAGTAAATGCAGAATTTAAAGCATGACTTTAATGTTTAACCTTAG ATGCCAAAAGATATATTCTACATCCGTCTATTTTTTTTTAAATATGAAATTATTTAAAAAAATATAAGGAACAAAATAGT TGGAGTTCATTGCTAATGTAGTCATGCAAATATCAGAGCCTCAAACTCTAAAACTGAGGTGGGATTGTGTGTTTTTTATT TTCCAGATTATCTGAATTGCTTATATATAGTAATTGTTTACTGGCCATATGCCAGTGAACCTAGCTTGTAAACTTATGTT AAGTTGCACTTGGTCTGCCAGGTATAGATCTGATTAGATGTTTTTTCGAGAGCTCTTTGATCCCAAGGCATGTTAATAAC TTGCATGATATAATCCTTCACTGTTGTGTGTATCATCTGTAAGAATATATATTCTTTTGTGTATTTATCTATTTTCTTTT GGATATGAGTACTCTTGTTCAGATTACCAGAAATATGTTATTGTCTTCTCATAAACGAAAATCATTTTTACAGGTGAGGT CTAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCCTTGAAATTCTATGCTTCT GTGCGACTTAATATCAAGAGAATAGGATTTGTCAAGAAAGGCGAAGAGGTATTAATCTATTTATTCTTCTACTGTCATCC TTCCTGCTTTGGTATTGGCATGTACGTCCAAATGTGAACTTAGTTGACTGGAATCAGCAATGTTCTGTTCTGAAACAGGC TTTCTTTTTTAATCTACAGATCAGGTTGCATCATTTGGTTGGTATGTTTTGGACAAAACCATTTTACATGTGTTTGTTCA TTGGTTATTGATCTAATGATGTCCTGTGTAGAAACTTGAGTTTTTCCCTGTTTATCTAGGGTTGAACTTTTTCCCCTTTA TCTTTTTTATGTGATCCCTGCTTGTTCAATACTAGGGTGAAACCCGTGCGATGCACCGGTCCTTAATTAATTGGACAATT CTGTGGTTGATCATGTAAAAATTGATCAACCCATGAACTTCGTTTAATCTTTTATGGTTTTTGTTTCCATAGATTATAGG AAGCCAGGTTGTTGTCAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCA AGGGTATATCTAGGAAAGCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAATGTATTAC TACAACGAGCAGAGTTTCCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAGAACTTGA AATGAAGCTCAGGGAGAAGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTGGAAGAAA TTGCAACCCTTGATTCTACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGA
CDS sequence (LotjaGi4g1v0310500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAGAAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATTATGTGGCT TGGTCGCTCTGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGGAATTGGTG GCCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTACTCTTGCTTTGCATGTGATTGCG GAGGCACAGAAGCAAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCCCTAGATAGGACACTTGCAGAGTCTATTGG TGTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCTCTTAGTCTTGTGGATACCTTAATCCGTA GTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGAT GCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAAAGTAT ATTGATTTTCATAAACCAGGTGAGGTCTAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTG GTAATGCCTTGAAATTCTATGCTTCTGTGCGACTTAATATCAAGAGAATAGGATTTGTCAAGAAAGGCGAAGAGATTATA GGAAGCCAGGTTGTTGTCAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGG CAAGGGTATATCTAGGAAAGCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAATGTATT ACTACAACGAGCAGAGTTTCCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAGAACTT GAAATGAAGCTCAGGGAGAAGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTGGAAGA AATTGCAACCCTTGATTCTACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGA
Protein sequence (LotjaGi4g1v0310500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVPTGSFALDLALGIGGLPKGRVVEIYGPEASGKTTLALHVIA EAQKQGGYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGD AHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEII GSQVVVKVVKNKLAPPFKTAEFELQFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTALEEL EMKLREKLLNPETEKVPESDSGEVLEEIATLDSTDEETAVVVEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 357 | 357 | 5.6E-211 | – | |
PANTHER | 1 | 357 | 357 | 5.6E-211 | – | |
TIGRFAM | 4 | 326 | 323 | 8.5E-139 | ||
Hamap | 4 | 331 | 328 | 43.996 | ||
Pfam | 7 | 271 | 265 | 5.8E-120 | ||
SUPERFAMILY | 8 | 270 | 263 | 3.58E-57 | ||
ProSiteProfiles | 35 | 194 | 160 | 34.943 | ||
Gene3D | 35 | 335 | 301 | 1.3E-95 | – | |
SMART | 57 | 231 | 175 | 4.8E-7 | ||
PRINTS | 93 | 122 | 30 | 8.9E-76 | ||
PRINTS | 127 | 156 | 30 | 8.9E-76 | ||
PRINTS | 165 | 194 | 30 | 8.9E-76 | ||
ProSiteProfiles | 204 | 275 | 72 | 27.151 | ||
PRINTS | 213 | 241 | 29 | 8.9E-76 | ||
ProSitePatterns | 216 | 224 | 9 | - | ||
PRINTS | 246 | 275 | 30 | 8.9E-76 | ||
SUPERFAMILY | 272 | 327 | 56 | 3.4E-8 | ||
PRINTS | 299 | 316 | 18 | 8.9E-76 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi4g1v0310500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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