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PF00154

Source: Pfam

Description

recA bacterial DNA recombination protein

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003697
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
Lj1g3v4226710.1
– PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502108338|ref|XP_004493447.1|
Domains
23
Lj1g3v4226710.2
– PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502108338|ref|XP_004493447.1|
Domains
24
Lj3g3v0422710.1
– PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Glycine max] gi|356556644|ref|XP_003546633.1|
Domains
10
Lj3g3v0422710.2
– PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Solanum lycopersicum] gi|460396872|ref|XP_004243994.1|
Domains
14
Lj4g3v2172560.1
– PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like isoform X4 [Cicer arietinum] gi|502150423|ref|XP_004507946.1|
Domains
24
Lj4g3v2172570.1
– PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max] gi|356561937|ref|XP_003549233.1|
Domains
4
Lj6g3v1239560.1
– RecA [Medicago truncatula] gi|357449857|ref|XP_003595205.1|
Domains
22
LotjaGi1g1v0669500.1
– RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500
Domains
22
LotjaGi1g1v0669500.2
– RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500
Domains
22
LotjaGi3g1v0037500.1
– Protein recA; TAIR: AT1G79050.1 recA DNA recombination family protein; Swiss-Prot: sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic; TrEMBL-Plants: tr|V7AKD7|V7AKD7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0037500
Domains
22
LotjaGi3g1v0037500.2
– Protein recA; TAIR: AT1G79050.1 recA DNA recombination family protein; Swiss-Prot: sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic; TrEMBL-Plants: tr|A0A0R0G3Y7|A0A0R0G3Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0037500
Domains
20
LotjaGi4g1v0310500.1
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500
Domains
21
LotjaGi4g1v0310500.2
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500
Domains
21
LotjaGi4g1v0310500.3
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A072V2Z1|A0A072V2Z1_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi4g1v0310500
Domains
20
LotjaGi6g1v0230700.1
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700
Domains
21
LotjaGi6g1v0230700.2
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700
Domains
20
LotjaGi6g1v0230700.3
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700
Domains
20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR02012 TIGRFAM 1 5.88