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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0132300 |
| Transcript ID | LotjaGi6g1v0132300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38137454..38140864) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACTCAGGGGATAAGAATCATGCTATTGCTAGCAATTTGCCTGCTTCCACTATCTGTGGAAGCCTTGGTTCGCCA CTACAAGTTTAATGTGGGTGAATTTTTCCTTTTATCATGTCAATCATGCATAAGCATACAGAATATTTTGAAGTTTGCTA AATTTATGATATGTTGTGAAATAATAGATGATAAAATGAAATGGGATCAAAATGAGCATCATATGTATTTTATTGTCCTT CATTTCCCTCTCTATATGATTTAATTGTTTTCCTGAAAAAGTATGCATTTGAAAATACTGTGAGACTTTTTTTTTGCTCT GTTCTTCCACTTGCTATTGTTTTTGTACTACAAGCATCAGTTGTACATTTGACTGCTATGAGCTAGTGTTGTTGTTTTCA CATATGAATGTAATTCTAAAACCACACTGAGCTATGAGTAATGTTTGTACTTTTCTATTCATTTCTGTTATCATCTTAAT ACAAAAATTTCTCATTTATGAAAAATGAATTAATTGAAGACTTTTATTTGAACTTGTTATCTGTCTTTCTTCTTTAGATT AATCCAAAAAAATGAAAGCTTGACAATTTTATGAATGTGATCATCCAAAATATTTTACTGCTTTAATAAACACACACATT AATTTGATGATTGGTAGGTATATGATTTAATATCTAGTAGTTAGAACCATTTACTATAATATTTATGTGTGATACATATT TTTGGTTAACACATTTAGAGGTACAACATTTTTAGCTGATGACTCAACCAGAATGGTTAAAGCAAGTGGTAAAAATCCTT CACATATGTTCAATTAGGCATATATGCCTTCTGTTGTGACTGTTAAAAACCATGTAACACTGCATTTTCTTTACACAACA GCAAGGTGGGTGTTGAATTGTTGAGCAAGGCACTTAAATTTGGTACACATGTTAGTTACACTTTCTCCTTCTTGTTGTTG AGTACAGGTGGTGATGAAAAATGCCACAAGATTGTGTTCAACCAAGCCCATTGTCACTGTAAATGGGAAGTTCCCAGGCC CCACCATCTATGCTAGGGAAGATGACACTGTTCTGATTAAGGTGGTTAACCATGTCAAATACAATGTCAGCATCCACTGG TGTGTGTTAGCTTCAGTCATTCAAATCTCAAATTTTTCTGCCATTTTCTTTTTCTTTTGTAAAACTGATTAAATGAATTT TGTATGAACAGGCATGGGGTCAGACAACTAAGAACTGGTTGGGCTGATGGGCCTGCATTCATAACCCAATGCCCAATTCA ACCGGGCCAGGTCTATCTGTACAACTTCACCCTAACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCTTGTGGC TTAGGGCCACTGTTCATGGGGCCATAGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCATATGGAG CAAGTTATCTTATTGAGTAAGTTCTCCTACCCTTTTCTTTACCTGCTAAACATTTATCTTTTATGAATTTTTAAGCTATG TTTGGATTCCTGTTAGCACCGATGCAAATGGACAATAGCACTCGCTTCAAGATTAAAAGTGAACGAGTTTTTCTTATGGA TTGGGTTTAATGTCATAAAATTGCACTCAACTAATATCCAAACACACAAATAACCATGAATTAGGGGAAAGAACATTAAT GTCTCCCTTGATTAGTCCAATAAAATAGAAAGCATAATTCATATAATTATATTTCATAATTCTCACTGTATTTTACTATG GTTCAGGTGAATGGTGGAAATCAGATACTGAGGCTGTGATAAATGAAGCTTTGAAATCTGGTTTGGCCCCAAATGTCTCT GATGCCCACACAATCAATGGCCATCCAGGGTCTGTCCAAGGCTGTACTTCACAAGGTGAAGTTCAAGAACAAAGCTCTAT AGCTTTTTGCATAATTAGACCAAGCTCCATGTGACTCAAAACCTTAAAATTAACAAGTTTATCTTGGCACTTCAAGGCAA AAGTGGGAAAATGATTAGTTTTCAGTTAATTTCTCAAAATACTGAGATTGAGTAGAGTTTTCAATTTTCTCATCTTTCTT TTGTGTGCAGGAGGGTTTACACTTGATGTTCAGCCTGGAAACACCTACTTGCTAAGAATCATCAATGCTGCACTCAATGA AGAGCTCTTCTTCAAGATTGCCGGCCATCAACTAACTGTTGTAGAGGTTGATGCCGCCTACACAAAACCCTTCAAAACTG ATACCGTTGTTATAGCACCAGGCCAGACCACAAATGTGCTTCTAACTGCCACACATGCAACTGGCAAATACTTGGTTGCA GCATCTCCTTTCATGGATGCTCCTATTACAGTTGACAACAGAACAGCCACTGCCGCATTACACTATTCGGGCACCCTTGG TTCCACCATCACCACCCTCACTACCTTGCCTCCTACAAATGCCACTCCAGTTGCTACTACCTTCACAGACTCTCTCAGAA GCTTAAACTCGAAAAGTTTCCCTGCAAGAGTCCCATTGAAGATTGACCATAACTTGCTCTTCACCGTTGGCCTTGGAATC AAACCGTGTGCTATTTGCGTGAATAATAGCCGCGTGGTCGCGGATATCAACAATGTGACCTTTGTGATGCCTAAGATTGC TCTTCTTCAAGCACATTTCTTCAAGATTAAGGGTGTTTTCACTGATGATTTTCCTGCAAACCCTCCTGTGGTGTATAACT TCACAGGGACACAACCAACAAATTTCAACACTATGAATGGGACAAGGCTTTATAGACTTGCTTACAACTCTACAGTTCAG TTGGTCTTGCAAGATACAGGAATGTTAACACCTGAGAACCATCCTATTCATCTCCATGGCTTCAATTTCTTTGTAGTTGG CAGGGGACAAGGGAATTTCAACCGCAAAAAGGATACCAAAAAATTCAATCTTGTAGATCCTGTGGAAAGAAACACAGTTG GTGTACCAGCTGGGGGGTGGACCGCTATCAGATTCAGAGCAGATAATCCAGGTAGAGTTATCAATTCATAGTCTGTTCGA ATCAACTTTTCTTTCATGAGAAATCATTTATGAATCCCAGAAGCTACTCAGAAAAGCTTTTTGTGTACAATTTATTCTGG CTTCAGAATTGCAGAAGAGTTTTCAATTTCCAAACACGCACTAAATTGTATCTGCATTTTGAAAGTTTGATGCTAACATA TATGTAGGAAGATAAAATGATTTTAAAGTCACACTTTTTTAGTATATATGTAATTAATTTATGGTGTTCTGTTTTGTTAG GGGTGTGGTTTATGCACTGCCATTTGGAGATTCATACAACATGGGGACTGAAGATGGCATTTGTGGTGGACAATGGTAAA GGACCAAATGAATCTATATTACCACCTCCAAGGGACCTTCCCAAGTGCTGA
CDS sequence (LotjaGi6g1v0132300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGTGGTGATGAAAAATGCCACAAGATTGTGTTCAACCAAGCCCATTGTCACTGTAAATGGGAAGTTCCCAGGCCC CACCATCTATGCTAGGGAAGATGACACTGTTCTGATTAAGGTGGTTAACCATGTCAAATACAATGTCAGCATCCACTGGC ATGGGGTCAGACAACTAAGAACTGGTTGGGCTGATGGGCCTGCATTCATAACCCAATGCCCAATTCAACCGGGCCAGGTC TATCTGTACAACTTCACCCTAACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCTTGTGGCTTAGGGCCACTGT TCATGGGGCCATAGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCATATGGAGCAAGTTATCTTAT TGAGTGAATGGTGGAAATCAGATACTGAGGCTGTGATAAATGAAGCTTTGAAATCTGGTTTGGCCCCAAATGTCTCTGAT GCCCACACAATCAATGGCCATCCAGGGTCTGTCCAAGGCTGTACTTCACAAGGAGGGTTTACACTTGATGTTCAGCCTGG AAACACCTACTTGCTAAGAATCATCAATGCTGCACTCAATGAAGAGCTCTTCTTCAAGATTGCCGGCCATCAACTAACTG TTGTAGAGGTTGATGCCGCCTACACAAAACCCTTCAAAACTGATACCGTTGTTATAGCACCAGGCCAGACCACAAATGTG CTTCTAACTGCCACACATGCAACTGGCAAATACTTGGTTGCAGCATCTCCTTTCATGGATGCTCCTATTACAGTTGACAA CAGAACAGCCACTGCCGCATTACACTATTCGGGCACCCTTGGTTCCACCATCACCACCCTCACTACCTTGCCTCCTACAA ATGCCACTCCAGTTGCTACTACCTTCACAGACTCTCTCAGAAGCTTAAACTCGAAAAGTTTCCCTGCAAGAGTCCCATTG AAGATTGACCATAACTTGCTCTTCACCGTTGGCCTTGGAATCAAACCGTGTGCTATTTGCGTGAATAATAGCCGCGTGGT CGCGGATATCAACAATGTGACCTTTGTGATGCCTAAGATTGCTCTTCTTCAAGCACATTTCTTCAAGATTAAGGGTGTTT TCACTGATGATTTTCCTGCAAACCCTCCTGTGGTGTATAACTTCACAGGGACACAACCAACAAATTTCAACACTATGAAT GGGACAAGGCTTTATAGACTTGCTTACAACTCTACAGTTCAGTTGGTCTTGCAAGATACAGGAATGTTAACACCTGAGAA CCATCCTATTCATCTCCATGGCTTCAATTTCTTTGTAGTTGGCAGGGGACAAGGGAATTTCAACCGCAAAAAGGATACCA AAAAATTCAATCTTGTAGATCCTGTGGAAAGAAACACAGTTGGTGTACCAGCTGGGGGGTGGACCGCTATCAGATTCAGA GCAGATAATCCAGGGGTGTGGTTTATGCACTGCCATTTGGAGATTCATACAACATGGGGACTGAAGATGGCATTTGTGGT GGACAATGGTAAAGGACCAAATGAATCTATATTACCACCTCCAAGGGACCTTCCCAAGTGCTGA
Protein sequence (LotjaGi6g1v0132300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWVVMKNATRLCSTKPIVTVNGKFPGPTIYAREDDTVLIKVVNHVKYNVSIHWHGVRQLRTGWADGPAFITQCPIQPGQV YLYNFTLTGQRGTLWWHAHILWLRATVHGAIVILPKLGVPYPFPKPHMEQVILLSEWWKSDTEAVINEALKSGLAPNVSD AHTINGHPGSVQGCTSQGGFTLDVQPGNTYLLRIINAALNEELFFKIAGHQLTVVEVDAAYTKPFKTDTVVIAPGQTTNV LLTATHATGKYLVAASPFMDAPITVDNRTATAALHYSGTLGSTITTLTTLPPTNATPVATTFTDSLRSLNSKSFPARVPL KIDHNLLFTVGLGIKPCAICVNNSRVVADINNVTFVMPKIALLQAHFFKIKGVFTDDFPANPPVVYNFTGTQPTNFNTMN GTRLYRLAYNSTVQLVLQDTGMLTPENHPIHLHGFNFFVVGRGQGNFNRKKDTKKFNLVDPVERNTVGVPAGGWTAIRFR ADNPGVWFMHCHLEIHTTWGLKMAFVVDNGKGPNESILPPPRDLPKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 115 | 114 | 2.4E-33 | ||
| PANTHER | 3 | 527 | 525 | 0.0 | – | |
| PANTHER | 3 | 527 | 525 | 0.0 | – | |
| CDD | 3 | 115 | 113 | 1.35575E-71 | ||
| TIGRFAM | 3 | 527 | 525 | 8.9E-273 | ||
| SUPERFAMILY | 3 | 139 | 137 | 2.44E-38 | ||
| Pfam | 5 | 116 | 112 | 1.7E-41 | ||
| SUPERFAMILY | 123 | 293 | 171 | 1.03E-42 | ||
| Gene3D | 127 | 311 | 185 | 3.5E-41 | ||
| CDD | 130 | 276 | 147 | 4.13472E-80 | ||
| Pfam | 130 | 278 | 149 | 1.5E-43 | ||
| SUPERFAMILY | 319 | 527 | 209 | 1.09E-47 | ||
| Gene3D | 338 | 527 | 190 | 1.3E-59 | ||
| CDD | 373 | 510 | 138 | 2.25824E-83 | ||
| Pfam | 378 | 510 | 133 | 2.5E-42 | ||
| ProSitePatterns | 485 | 505 | 21 | - | ||
| ProSitePatterns | 490 | 501 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Lignin catabolic process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. | ||
| Molecular function | Hydroquinone:oxygen oxidoreductase activity | Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0132300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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