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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0132300 |
| Transcript ID | LotjaGi6g1v0132300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38137384..38142281) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCATTCAAGAGAGTTAACTAGCCATCAAAGAAGAAGCTAGTTAGCAAGAGAACTCAAAGGGGTGTTCATGGCGACTC AGGGGATAAGAATCATGCTATTGCTAGCAATTTGCCTGCTTCCACTATCTGTGGAAGCCTTGGTTCGCCACTACAAGTTT AATGTGGGTGAATTTTTCCTTTTATCATGTCAATCATGCATAAGCATACAGAATATTTTGAAGTTTGCTAAATTTATGAT ATGTTGTGAAATAATAGATGATAAAATGAAATGGGATCAAAATGAGCATCATATGTATTTTATTGTCCTTCATTTCCCTC TCTATATGATTTAATTGTTTTCCTGAAAAAGTATGCATTTGAAAATACTGTGAGACTTTTTTTTTGCTCTGTTCTTCCAC TTGCTATTGTTTTTGTACTACAAGCATCAGTTGTACATTTGACTGCTATGAGCTAGTGTTGTTGTTTTCACATATGAATG TAATTCTAAAACCACACTGAGCTATGAGTAATGTTTGTACTTTTCTATTCATTTCTGTTATCATCTTAATACAAAAATTT CTCATTTATGAAAAATGAATTAATTGAAGACTTTTATTTGAACTTGTTATCTGTCTTTCTTCTTTAGATTAATCCAAAAA AATGAAAGCTTGACAATTTTATGAATGTGATCATCCAAAATATTTTACTGCTTTAATAAACACACACATTAATTTGATGA TTGGTAGGTATATGATTTAATATCTAGTAGTTAGAACCATTTACTATAATATTTATGTGTGATACATATTTTTGGTTAAC ACATTTAGAGGTACAACATTTTTAGCTGATGACTCAACCAGAATGGTTAAAGCAAGTGGTAAAAATCCTTCACATATGTT CAATTAGGCATATATGCCTTCTGTTGTGACTGTTAAAAACCATGTAACACTGCATTTTCTTTACACAACAGCAAGGTGGG TGTTGAATTGTTGAGCAAGGCACTTAAATTTGGTACACATGTTAGTTACACTTTCTCCTTCTTGTTGTTGAGTACAGGTG GTGATGAAAAATGCCACAAGATTGTGTTCAACCAAGCCCATTGTCACTGTAAATGGGAAGTTCCCAGGCCCCACCATCTA TGCTAGGGAAGATGACACTGTTCTGATTAAGGTGGTTAACCATGTCAAATACAATGTCAGCATCCACTGGTGTGTGTTAG CTTCAGTCATTCAAATCTCAAATTTTTCTGCCATTTTCTTTTTCTTTTGTAAAACTGATTAAATGAATTTTGTATGAACA GGCATGGGGTCAGACAACTAAGAACTGGTTGGGCTGATGGGCCTGCATTCATAACCCAATGCCCAATTCAACCGGGCCAG GTCTATCTGTACAACTTCACCCTAACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCTTGTGGCTTAGGGCCAC TGTTCATGGGGCCATAGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCATATGGAGCAAGTTATCT TATTGAGTAAGTTCTCCTACCCTTTTCTTTACCTGCTAAACATTTATCTTTTATGAATTTTTAAGCTATGTTTGGATTCC TGTTAGCACCGATGCAAATGGACAATAGCACTCGCTTCAAGATTAAAAGTGAACGAGTTTTTCTTATGGATTGGGTTTAA TGTCATAAAATTGCACTCAACTAATATCCAAACACACAAATAACCATGAATTAGGGGAAAGAACATTAATGTCTCCCTTG ATTAGTCCAATAAAATAGAAAGCATAATTCATATAATTATATTTCATAATTCTCACTGTATTTTACTATGGTTCAGGTGA ATGGTGGAAATCAGATACTGAGGCTGTGATAAATGAAGCTTTGAAATCTGGTTTGGCCCCAAATGTCTCTGATGCCCACA CAATCAATGGCCATCCAGGGTCTGTCCAAGGCTGTACTTCACAAGGTGAAGTTCAAGAACAAAGCTCTATAGCTTTTTGC ATAATTAGACCAAGCTCCATGTGACTCAAAACCTTAAAATTAACAAGTTTATCTTGGCACTTCAAGGCAAAAGTGGGAAA ATGATTAGTTTTCAGTTAATTTCTCAAAATACTGAGATTGAGTAGAGTTTTCAATTTTCTCATCTTTCTTTTGTGTGCAG GAGGGTTTACACTTGATGTTCAGCCTGGAAACACCTACTTGCTAAGAATCATCAATGCTGCACTCAATGAAGAGCTCTTC TTCAAGATTGCCGGCCATCAACTAACTGTTGTAGAGGTTGATGCCGCCTACACAAAACCCTTCAAAACTGATACCGTTGT TATAGCACCAGGCCAGACCACAAATGTGCTTCTAACTGCCACACATGCAACTGGCAAATACTTGGTTGCAGCATCTCCTT TCATGGATGCTCCTATTACAGTTGACAACAGAACAGCCACTGCCGCATTACACTATTCGGGCACCCTTGGTTCCACCATC ACCACCCTCACTACCTTGCCTCCTACAAATGCCACTCCAGTTGCTACTACCTTCACAGACTCTCTCAGAAGCTTAAACTC GAAAAGTTTCCCTGCAAGAGTCCCATTGAAGATTGACCATAACTTGCTCTTCACCGTTGGCCTTGGAATCAAACCGTGTG CTATTTGCGTGAATAATAGCCGCGTGGTCGCGGATATCAACAATGTGACCTTTGTGATGCCTAAGATTGCTCTTCTTCAA GCACATTTCTTCAAGATTAAGGGTGTTTTCACTGATGATTTTCCTGCAAACCCTCCTGTGGTGTATAACTTCACAGGGAC ACAACCAACAAATTTCAACACTATGAATGGGACAAGGCTTTATAGACTTGCTTACAACTCTACAGTTCAGTTGGTCTTGC AAGATACAGGAATGTTAACACCTGAGAACCATCCTATTCATCTCCATGGCTTCAATTTCTTTGTAGTTGGCAGGGGACAA GGGAATTTCAACCGCAAAAAGGATACCAAAAAATTCAATCTTGTAGATCCTGTGGAAAGAAACACAGTTGGTGTACCAGC TGGGGGGTGGACCGCTATCAGATTCAGAGCAGATAATCCAGGTAGAGTTATCAATTCATAGTCTGTTCGAATCAACTTTT CTTTCATGAGAAATCATTTATGAATCCCAGAAGCTACTCAGAAAAGCTTTTTGTGTACAATTTATTCTGGCTTCAGAATT GCAGAAGAGTTTTCAATTTCCAAACACGCACTAAATTGTATCTGCATTTTGAAAGTTTGATGCTAACATATATGTAGGAA GATAAAATGATTTTAAAGTCACACTTTTTTAGTATATATGTAATTAATTTATGGTGTTCTGTTTTGTTAGGGGTGTGGTT TATGCACTGCCATTTGGAGATTCATACAACATGGGGACTGAAGATGGCATTTGTGGTGGACAATGGTAAAGGACCAAATG AATCTATATTACCACCTCCAAGGGACCTTCCCAAGTGCTGAGGAAAGTGCTAATTAACATTCTATGCTCAATGAGGAAAG GCAAACATACAAAATTTAAGGAACTGTATATGTCAAAAGGAGGATCAATCAGTAGACTAATAACAAGATTTTCTTGGAGA AAGGAAAGGAAGAAAAATATGCTGAGAGGGGATAGAATCAATTGACAAGTCTTCATCTATTTTCTCCTTTTTCCATCTTT TTTATTTCATAGAATCATAGTTTGTGCTCATATTTGTCTTGTTGGAATGATATTTTTTGCTTTAATTATGAATACAAATG CTAATGAACTTTTAAGACCCCTTGCCTTATGTTACATCACAAGTTTGCTATTGGTTCCAGAACTGATTATGCAAATAGAA TTAAAGCGCATGACTGTTATTGATTAAAACAATGCCATTAGATTTTATAGGAGCTTTGAAGTTGTTGGTAGAGTTACAAA GGAATTTTGCATGATAGAATAAGGAATGAAATGGTCTAATGTGCAAACAAAATTATATGTGGAATCTAAGTCAATGATCC GGGTAAATGAAGAAGAAGAGCTATAGTTCTGAAATAAAAAGATGGACAAAAGGTGGTGTCGTCTATTGCAAAGGAAGATC AAAGAATGGTGGAAATGAAGGATATGCTTAAAATTGCATCATATAGACTACATAGTAATTTTTTTTTTGAGGGAATAGTT GAGTAGACATTATTTCAATACTACTATTTAGCATTAGCTAAATAATTTTAGAAATAAATGAGTATCTGACAGCTCATTGT TAAACTCAATAAAATTGTCCTCGAATGATAGCTCAAGTGGTAAAAGTTAGGGGACATGTGCGTTGGATGAAGAAGGTCCA TGGATCAATCATTTAGATGGTGCAATTTATCTTTCCAATCCACCAAAAATAAAACTCAACAAAATTATTTTCAGATGTAC CTAAAAAAAATCAACAAAGTTAAATAATAAAAATAAAAAAACTAGCAAGTATTTTAAATCCTAGAAAATAATGATAAAAA TATTAAAGAAAGAAAGTTATCTTTAAACTTACAAAATATGTATAAATTATTTATGGACATAAAAAAAATTGACATCTCCA GCTCCTACCATAAATCATAAATTTTTTGTGCTTCCTGATACGGTTCATGAGAGACAATTAATTCAAATTGAGAACATATA TTCATATCATGATGAAACTAATTCTTTTAAAAAAAAAATTATTCACAAAACTCAAATCAAAACTACTTACAGTTAGGCTT GTATTATTTTGTGCTGATTCACTTCCACGTTATAACCCGCCATTGCTTTGGTAGCGTGGTGTTTATAAAATCACATTACT GGCGTGGTTGAGTGTCCTACAATATACAACAAGTAGAATAATAAGATCCTTGTTTGGCTGGATATCCACGCGCGTCACAT GAGTAGAATCACGCACAC
CDS sequence (LotjaGi6g1v0132300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTCAGGGGATAAGAATCATGCTATTGCTAGCAATTTGCCTGCTTCCACTATCTGTGGAAGCCTTGGTTCGCCA CTACAAGTTTAATGTGGTGATGAAAAATGCCACAAGATTGTGTTCAACCAAGCCCATTGTCACTGTAAATGGGAAGTTCC CAGGCCCCACCATCTATGCTAGGGAAGATGACACTGTTCTGATTAAGGTGGTTAACCATGTCAAATACAATGTCAGCATC CACTGGCATGGGGTCAGACAACTAAGAACTGGTTGGGCTGATGGGCCTGCATTCATAACCCAATGCCCAATTCAACCGGG CCAGGTCTATCTGTACAACTTCACCCTAACAGGCCAAAGAGGCACACTTTGGTGGCATGCACATATCTTGTGGCTTAGGG CCACTGTTCATGGGGCCATAGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCCCATATGGAGCAAGTT ATCTTATTGAGTGAATGGTGGAAATCAGATACTGAGGCTGTGATAAATGAAGCTTTGAAATCTGGTTTGGCCCCAAATGT CTCTGATGCCCACACAATCAATGGCCATCCAGGGTCTGTCCAAGGCTGTACTTCACAAGGAGGGTTTACACTTGATGTTC AGCCTGGAAACACCTACTTGCTAAGAATCATCAATGCTGCACTCAATGAAGAGCTCTTCTTCAAGATTGCCGGCCATCAA CTAACTGTTGTAGAGGTTGATGCCGCCTACACAAAACCCTTCAAAACTGATACCGTTGTTATAGCACCAGGCCAGACCAC AAATGTGCTTCTAACTGCCACACATGCAACTGGCAAATACTTGGTTGCAGCATCTCCTTTCATGGATGCTCCTATTACAG TTGACAACAGAACAGCCACTGCCGCATTACACTATTCGGGCACCCTTGGTTCCACCATCACCACCCTCACTACCTTGCCT CCTACAAATGCCACTCCAGTTGCTACTACCTTCACAGACTCTCTCAGAAGCTTAAACTCGAAAAGTTTCCCTGCAAGAGT CCCATTGAAGATTGACCATAACTTGCTCTTCACCGTTGGCCTTGGAATCAAACCGTGTGCTATTTGCGTGAATAATAGCC GCGTGGTCGCGGATATCAACAATGTGACCTTTGTGATGCCTAAGATTGCTCTTCTTCAAGCACATTTCTTCAAGATTAAG GGTGTTTTCACTGATGATTTTCCTGCAAACCCTCCTGTGGTGTATAACTTCACAGGGACACAACCAACAAATTTCAACAC TATGAATGGGACAAGGCTTTATAGACTTGCTTACAACTCTACAGTTCAGTTGGTCTTGCAAGATACAGGAATGTTAACAC CTGAGAACCATCCTATTCATCTCCATGGCTTCAATTTCTTTGTAGTTGGCAGGGGACAAGGGAATTTCAACCGCAAAAAG GATACCAAAAAATTCAATCTTGTAGATCCTGTGGAAAGAAACACAGTTGGTGTACCAGCTGGGGGGTGGACCGCTATCAG ATTCAGAGCAGATAATCCAGGGGTGTGGTTTATGCACTGCCATTTGGAGATTCATACAACATGGGGACTGAAGATGGCAT TTGTGGTGGACAATGGTAAAGGACCAAATGAATCTATATTACCACCTCCAAGGGACCTTCCCAAGTGCTGA
Protein sequence (LotjaGi6g1v0132300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQGIRIMLLLAICLLPLSVEALVRHYKFNVVMKNATRLCSTKPIVTVNGKFPGPTIYAREDDTVLIKVVNHVKYNVSI HWHGVRQLRTGWADGPAFITQCPIQPGQVYLYNFTLTGQRGTLWWHAHILWLRATVHGAIVILPKLGVPYPFPKPHMEQV ILLSEWWKSDTEAVINEALKSGLAPNVSDAHTINGHPGSVQGCTSQGGFTLDVQPGNTYLLRIINAALNEELFFKIAGHQ LTVVEVDAAYTKPFKTDTVVIAPGQTTNVLLTATHATGKYLVAASPFMDAPITVDNRTATAALHYSGTLGSTITTLTTLP PTNATPVATTFTDSLRSLNSKSFPARVPLKIDHNLLFTVGLGIKPCAICVNNSRVVADINNVTFVMPKIALLQAHFFKIK GVFTDDFPANPPVVYNFTGTQPTNFNTMNGTRLYRLAYNSTVQLVLQDTGMLTPENHPIHLHGFNFFVVGRGQGNFNRKK DTKKFNLVDPVERNTVGVPAGGWTAIRFRADNPGVWFMHCHLEIHTTWGLKMAFVVDNGKGPNESILPPPRDLPKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 5 | 556 | 552 | 0.0 | – | |
| PANTHER | 5 | 556 | 552 | 0.0 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| SUPERFAMILY | 17 | 168 | 152 | 3.58E-41 | ||
| Gene3D | 19 | 144 | 126 | 4.8E-36 | ||
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 556 | 533 | - | – | |
| TIGRFAM | 24 | 556 | 533 | 5.1E-277 | ||
| CDD | 28 | 144 | 117 | 7.00593E-74 | ||
| Pfam | 32 | 145 | 114 | 1.3E-41 | ||
| SUPERFAMILY | 152 | 322 | 171 | 1.27E-42 | ||
| Gene3D | 156 | 340 | 185 | 3.9E-41 | ||
| CDD | 159 | 305 | 147 | 7.32094E-80 | ||
| Pfam | 159 | 307 | 149 | 1.7E-43 | ||
| SUPERFAMILY | 348 | 556 | 209 | 1.24E-47 | ||
| Gene3D | 367 | 556 | 190 | 1.4E-59 | ||
| CDD | 402 | 539 | 138 | 2.79256E-83 | ||
| Pfam | 407 | 539 | 133 | 2.8E-42 | ||
| ProSitePatterns | 514 | 534 | 21 | - | ||
| ProSitePatterns | 519 | 530 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Lignin catabolic process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. | ||
| Molecular function | Hydroquinone:oxygen oxidoreductase activity | Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0132300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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