Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0230700 |
| Transcript ID | LotjaGi6g1v0230700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53941253..53945429) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGCGCTCTAAGTCAGATGGAGATGAGTCTAGTGAAGAGAACATGTCTAAAAAAGATTTGGCCCTACAACAAGCCCT AGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGG TGTCAACTGGTTCTTTTGCTCTTGATATAGCTCTTGGAATCGGTGGTCTTCCAAAGGTATCCTTAGATCTTTTTCTTTTG ATGCGCCTGATTCAATATTGAGATTTTATTTAAATACATTGAATGAGTTGTTATTGGATAAGTTACTCATGCTGATGACA GAGGATATATGTATTTTTTGCTCTGGCTCAATTTGTTAAGTTCCTCTCCACATTTCTTTTGCATGTTTCCTTTCATTTAC ACTTTTTATAATTTATTCTGATCTATCGAAAAATCATCATCTATTACTGTTTTGTATGCCCATCACTTGTTAATCTTCTT TACTGATTGTTGTTTTGATAGTGACTGTGTGAAATATGTTCCTGGTTATGAGATGACACTTGCATTTTGGTTTCCATATA TGTCATTGGAGATATATATGTTGAGAAAGAGCAATGAGAGAATCAATCTTATGTTTCATTGTGCAACAATTATGTTTTGA TTATTGTATATAACTGTGATGTCTTTAGGGGCGTGTTGTGGAAATATTTGGTCCCGAGGCTTCTGGGAAAACAACTCTTG CTTTGCACGTGATTTCAGAGGCACAAAAGCTAGGAGGTTATCTTTATGTGCTATTTTGAAGTGATAACTGTGATCTCTAT AAGTCCATTGCTTATGTGTTCTGCTTGTATTAGATTAAGCATTTCAACTGTTGTTTGTTATATGTATGACCATAATCGTC ATGTTCTGATATTTTTCCCTTTCTCTTACATGTGACTAATCATAATCATAATGTCATACTTTGAATGGATGTTTTTTTAT TTTGATTTTTATGACATTTTAATGTATGTCTAAATTAGCTTCTCTTACGCTTTTGACTAATACTGTTTAAAAAATGAAAA TTTGGTGTTCCCATTCATCCAAGTCCAAGGCTTGTCATTTTATTAATTTGTGCTTCAAAACTTCACCACAATTTGTAGGT GCTTCCAGATTTTTTAGTTGCATGAACAGGGTTATGTTCTACCCTCTCCACCCCTCCCCCTCCTTTTTGATATAGAATGA AGAGGTTGTACTGTTTGTTTAATTTAAATTTTACACTAATTATCTTTGGGGGCTATGCTAATCTTTTTGCACTTAATGCT ACCATGAGTTAAATGAAGATTACTACTAGGGCTGTATACTTTTGGTAGTTGGTTCCGTGGTTAACTGGTTAACTTATTAA CAGTATCTCTATTAATTAATTTGTTTGTATCATGTAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGAC ACTTGCAGAGTCTATTGGGGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTG TGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTAAGTATGGAAGTCTTCATCTTTTTTTTT TATTAGTACTTTCTTGAGTGTGTGGGTGTGTGATGAATTAATTCTACTTCAACTTTTGTACAGCTAGTAGTATGTTTGGT AAGTTCTTGGGATCCTGAAATCTGTGATGTGGGTCCTGTTGTGGAATTGATGTGTCTTTTAGCATAGACACTAGACCTAT CGAAGTTCTTAATCCTTTTTTCGTATTTTTTCTTTGTAATTTTAATAGGTTTTAGATTATGGTATTTGCATCTTTTTTCT CTAAGTTAAGTAAACGTCTTCAACTTTTGCATAAACATGTGTCTTTGAGCATAGACACTAGGCCTAATTTTCAAAGTTCT CAATCCTTTTTATGTATTTTGTATTTTTATTTTTAATAGGTTTTAGATTACATTACTAGTATCTTTAGTAAACGTCCTTG ACTTTTTGCCATGTTTCCATTTATAGGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCAT ATGGCAATGCAAGCTAGGTTGATGAGCCAGGCACTGCGGAAATTGTGCCACTCCTTGTCACTTTCACAATGTATATTGAT TTTTATAAACCAGGTATCGGCTACCGTTGATTATTTCACTGTCATTGATTTTCTTTTGGCTTAATTGTGAAAATAATTTT ATTTTTTCTTGAGCAATGTAGGTTGCATAGCAAAATTATGTTCTTGTTGGATTAGTCTGATGTATACTGATATCACATTG GTCTATGACTAAGTTTTGTGGTCTTGAGTCAGTGTGGTTCCATTTGCATTTAATGGTTGAGCTTGGGCTTGTCTAGTGTG CGATAGCCAATGTGCTTTTAGGTTCATTACTACAAGGTATTGTTGTTTGTTAGGAATTTAGAGCATAAATATGAAGATAA ATGTTTTCAGTAGAAATACCAAGAAAACCATGGATAACCAGACACTGCTCCTCGGGGAAGATTCTTGCCCATCTCAAAAG CTGAATACACTAACCCATACAAAATATCACTATGGCATGGTCTCAACTCTCATTTTTCTCATCACTAACTTCCCGCATCC TCACCCTGCCCTTTCTGACCTTGTTTCATTGCTCTTCTATAATACCTCTTCCAAACCATAGGCCCATGAGCTACTATCCG GCCTTTTAACTTTCTCTCTATCCAATTCAAGCCTCACAGTTCCATTGTTGTAATTTGTATGTTTTATAATTTTCACTATG TTGTTGTGTTGATATTTAACTTTTGTTCCGCCTGGCCTTTTTTTGGTTCGTGTTCTAGTTAATGTTATTTCCTAGCTACA GTTTCATCCATTTTCTTTTTTATCCAGGTAAAGCTGCATGAGTGCAAAATTTAGTGCATGCTTTGATGTGTAAATTGTAA ATATTAGAGATCAAAGTACTAAGGTTATAATAGTACTCTTAATAGAAAGCAACATGGATTCCATTGACCAAAAACTAAGA AAGATGGAATGTGTTGTTGTATTTTGACATAAATGATTATCTAAACTGATTTAATGTGATGCTGATATATCGGTACTGAT GTTTCGGTGTGCTAATTTCCGTTTGCTAGTTTACCAATTTTGTGAAGTTGTGGAGGCTGAGCTTACATTTCAGGCTTCAT GATTTTGCTTGGTTGAGATAGCTGTTTGGTCCTAGGAATGTTCTTGTTAAATGAGATGCATGTTACTGTCTTTTACTGTT TATATATCGTGTAAGAGTATATGAATCTTCTTTTTTTGGTATAGGTAATTTTGTTCAAATTACCTGAGGGAAAGATTTAT CTTTTAATTATGGGAACTTTTGTGTATGCTTCTCCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTA CTGAAGTTACTTGTGGTGGTAATGCATTGAAATTTTATTCTTCTGTGCGGCTAAATATCAAAAGAATAGGGCTTGTCAAG AAGGGTGAAGAGGTACTAATCATCTATTAATTCTTCTTTTCTCTTGCAATTATTATTGTCTCAAATAGAGTTATTAATTG CTCACAGTGCTGACCCTTAAATTGGTACACTACAGTAGCTAATCTTGTATAAAGCCTGTTTCACTCGTGCTTGATCTTTT GAATGTGATCTATGTCTGTGCCATATTGTTTTAATATTGCTTTGAATGCATTTAAGTCTAATTTATGGTATACTCTACCT TTATGGCATTTTACTTTACAGACTTTAGGAAGCCATGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAA AACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATATGTAGAGACGCAGAGATTATAGAGTTGAGCATAAAATACAAAC TCATTAGAAAGAGTGGTTCATTTTATGAATATAATGGCCGGAATTACCACGGTAAGGATGCTCTAAAGAGGTTCCTGGCT GACAGTGGCAGTACAGAAGAATTAGCAACAAAGCTAAGGGAGAAACTTCTTAATGGCGAGACAGATACGGCTCCAGAGGC GCAAGTGACGATTGGAGATGTTTCGGAAGAAACGGTATTTCCTGATTCTACTGATGAAGAAGCAGCTGCTGTTGTCGAAG CATGAATTTGGACGTGA
CDS sequence (LotjaGi6g1v0230700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAAAAAGATTTGGCCCTACAACAAGCCCTAGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCT TGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTGTCAACTGGTTCTTTTGCTCTTGATATAGCTCTTGGAATCGGTG GTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCCGAGGCTTCTGGGAAAACAACTCTTGCTTTGCACGTGATTTCA GAGGCACAAAAGCTAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCTATTGG GGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGA GTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGAT GCTCATATGGCAATGCAAGCTAGGTTGATGAGCCAGGCACTGCGGAAATTGTGCCACTCCTTGTCACTTTCACAATGTAT ATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTG GTAATGCATTGAAATTTTATTCTTCTGTGCGGCTAAATATCAAAAGAATAGGGCTTGTCAAGAAGGGTGAAGAGACTTTA GGAAGCCATGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGG CAAGGGTATATGTAGAGACGCAGAGATTATAGAGTTGAGCATAAAATACAAACTCATTAGAAAGAGTGGTTCATTTTATG AATATAATGGCCGGAATTACCACGGTAAGGATGCTCTAAAGAGGTTCCTGGCTGACAGTGGCAGTACAGAAGAATTAGCA ACAAAGCTAAGGGAGAAACTTCTTAATGGCGAGACAGATACGGCTCCAGAGGCGCAAGTGACGATTGGAGATGTTTCGGA AGAAACGGTATTTCCTGATTCTACTGATGAAGAAGCAGCTGCTGTTGTCGAAGCATGA
Protein sequence (LotjaGi6g1v0230700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVIS EAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD AHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETL GSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADSGSTEELA TKLREKLLNGETDTAPEAQVTIGDVSEETVFPDSTDEEAAAVVEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 359 | 359 | 1.5E-230 | – | |
| PANTHER | 1 | 359 | 359 | 1.5E-230 | – | |
| TIGRFAM | 4 | 325 | 322 | 4.5E-134 | ||
| Hamap | 4 | 331 | 328 | 41.946 | ||
| Pfam | 7 | 270 | 264 | 3.0E-117 | ||
| SUPERFAMILY | 8 | 270 | 263 | 3.74E-55 | ||
| Gene3D | 35 | 332 | 298 | 6.1E-94 | – | |
| ProSiteProfiles | 35 | 194 | 160 | 34.378 | ||
| SMART | 57 | 231 | 175 | 3.2E-6 | ||
| PRINTS | 93 | 122 | 30 | 3.3E-72 | ||
| PRINTS | 127 | 156 | 30 | 3.3E-72 | ||
| PRINTS | 165 | 194 | 30 | 3.3E-72 | ||
| ProSiteProfiles | 204 | 275 | 72 | 25.345 | ||
| PRINTS | 213 | 241 | 29 | 3.3E-72 | ||
| ProSitePatterns | 216 | 224 | 9 | - | ||
| PRINTS | 246 | 275 | 30 | 3.3E-72 | ||
| SUPERFAMILY | 274 | 324 | 51 | 2.35E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi6g1v0230700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…