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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
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We have found 323 results. Now displaying 6 of 7 with 50 rows per page. This search has taken 5.583s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0161200.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|E0WC42|E0WC42_SOYBN CCAAT-binding transcription factor family protein; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41409108 41414811 -
3 domain predictions
1 GO term
LotjaGi5g1v0161200.4
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0B2NVD4|A0A0B2NVD4_GLYSO Nuclear transcription factor Y subunit B-8; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41412956 41414430 -
3 domain predictions
1 GO term
LotjaGi5g1v0161200.5
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G38880.10 nuclear factor Y, subunit B1; Swiss-Prot: sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1; TrEMBL-Plants: tr|A0A0R0I2W3|A0A0R0I2W3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41413024 41414430 -
3 domain predictions
1 GO term
LotjaGi5g1v0173900.1
n.a. Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900 LjG1.1_chr5 44438515 44440093 -
3 domain predictions
1 GO term
LotjaGi5g1v0173900.2
n.a. Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900 LjG1.1_chr5 44439004 44439611 -
3 domain predictions
1 GO term
LotjaGi5g1v0219700.1
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3; TrEMBL-Plants: tr|I3SQH5|I3SQH5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0219700 LjG1.1_chr5 52616836 52626849 +
3 domain predictions
1 GO term
LotjaGi5g1v0221800.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT1G09030.1 nuclear factor Y, subunit B4; Swiss-Prot: sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4; TrEMBL-Plants: tr|A0A0L9VIY1|A0A0L9VIY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0221800 LjG1.1_chr5 52848012 52849012 -
3 domain predictions
1 GO term
LotjaGi5g1v0246600.1
n.a. Transcription initiation factor TFIID subunit 13; TAIR: AT1G02680.1 TBP-associated factor 13; Swiss-Prot: sp|Q6NQH4|TAF13_ARATH Transcription initiation factor TFIID subunit 13; TrEMBL-Plants: tr|I3T0K3|I3T0K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0246600 LjG1.1_chr5 55510033 55510942 +
3 domain predictions
1 GO term
LotjaGi5g1v0246600.2
n.a. Transcription initiation factor TFIID subunit 13; TAIR: AT1G02680.1 TBP-associated factor 13; Swiss-Prot: sp|Q6NQH4|TAF13_ARATH Transcription initiation factor TFIID subunit 13; TrEMBL-Plants: tr|I3T0K3|I3T0K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0246600 LjG1.1_chr5 55510033 55512122 +
3 domain predictions
1 GO term
LotjaGi5g1v0253600.1
n.a. Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O65819|H2B3_SOLLC Histone H2B.3; TrEMBL-Plants: tr|I3SW26|I3SW26_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0253600 LjG1.1_chr5 56252091 56252507 -
3 domain predictions
1 GO term
LotjaGi5g1v0335000.1
n.a. Transcription initiation factor TFIID subunit 8; TAIR: AT1G31240.1 Bromodomain transcription factor; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|G7J7B1|G7J7B1_MEDTR Bromodomain associated protein; Found in the gene: LotjaGi5g1v0335000 LjG1.1_chr5 65207099 65212076 +
2 domain predictions
1 GO term
LotjaGi5g1v0335000.2
n.a. Transcription initiation factor TFIID subunit 8; TAIR: AT1G31240.1 Bromodomain transcription factor; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|G7J7B1|G7J7B1_MEDTR Bromodomain associated protein; Found in the gene: LotjaGi5g1v0335000 LjG1.1_chr5 65207101 65215117 +
2 domain predictions
1 GO term
LotjaGi6g1v0081600.1
n.a. Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15619929 15622459 -
3 domain predictions
1 GO term
LotjaGi6g1v0081600.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15620027 15620972 -
3 domain predictions
1 GO term
LotjaGi6g1v0081600.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15620027 15620972 -
3 domain predictions
1 GO term
LotjaGi6g1v0081600.4
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15620027 15621218 -
3 domain predictions
1 GO term
LotjaGi6g1v0081600.5
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15620260 15620972 -
3 domain predictions
1 GO term
LotjaGi6g1v0081600.6
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15620260 15621058 -
3 domain predictions
1 GO term
LotjaGi6g1v0081600.7
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 LjG1.1_chr6 15620260 15621218 -
3 domain predictions
1 GO term
LotjaGi6g1v0090900.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0090900 LjG1.1_chr6 19578042 19579798 +
3 domain predictions
1 GO term
LotjaGi6g1v0090900.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0090900 LjG1.1_chr6 19578689 19579492 +
3 domain predictions
1 GO term
LotjaGi6g1v0090900.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0090900 LjG1.1_chr6 19578778 19579614 +
3 domain predictions
1 GO term
LotjaGi6g1v0091000.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000 LjG1.1_chr6 19592591 19593611 -
3 domain predictions
1 GO term
LotjaGi6g1v0091000.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000 LjG1.1_chr6 19592763 19593614 -
3 domain predictions
1 GO term
LotjaGi6g1v0091000.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000 LjG1.1_chr6 19592901 19593703 -
3 domain predictions
1 GO term
LotjaGi6g1v0091200.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091200 LjG1.1_chr6 19663195 19665059 +
3 domain predictions
1 GO term
LotjaGi6g1v0091200.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091200 LjG1.1_chr6 19663881 19664684 +
3 domain predictions
1 GO term
LotjaGi6g1v0091200.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091200 LjG1.1_chr6 19663970 19664806 +
3 domain predictions
1 GO term
LotjaGi6g1v0091300.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 LjG1.1_chr6 19698468 19699319 -
3 domain predictions
1 GO term
LotjaGi6g1v0091300.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 LjG1.1_chr6 19698468 19699569 -
3 domain predictions
1 GO term
LotjaGi6g1v0091300.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 LjG1.1_chr6 19698602 19699319 -
3 domain predictions
1 GO term
LotjaGi6g1v0091300.4
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 LjG1.1_chr6 19698606 19699319 -
3 domain predictions
1 GO term
LotjaGi6g1v0091300.5
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 LjG1.1_chr6 19698606 19699408 -
3 domain predictions
1 GO term
LotjaGi6g1v0091300.6
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 LjG1.1_chr6 19698606 19699569 -
3 domain predictions
1 GO term
LotjaGi6g1v0091500.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091500 LjG1.1_chr6 19775154 19776924 +
3 domain predictions
1 GO term
LotjaGi6g1v0091500.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091500 LjG1.1_chr6 19775773 19776577 +
3 domain predictions
1 GO term
LotjaGi6g1v0091500.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091500 LjG1.1_chr6 19775862 19776671 +
3 domain predictions
1 GO term
LotjaGi6g1v0101500.2
n.a. Nuclear transcription factor Y protein; TAIR: AT5G43250.1 nuclear factor Y, subunit C13; Swiss-Prot: sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog; TrEMBL-Plants: tr|G7JC00|G7JC00_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi6g1v0101500 LjG1.1_chr6 22324441 22327714 -
3 domain predictions
1 GO term
LotjaGi6g1v0101500.3
n.a. Nuclear transcription factor Y protein; TAIR: AT5G43250.1 nuclear factor Y, subunit C13; Swiss-Prot: sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog; TrEMBL-Plants: tr|G7JC00|G7JC00_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi6g1v0101500 LjG1.1_chr6 22325463 22327728 -
3 domain predictions
1 GO term
LotjaGi6g1v0104000.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22852948 22854655 +
3 domain predictions
1 GO term
LotjaGi6g1v0104000.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22853388 22854392 +
3 domain predictions
1 GO term
LotjaGi6g1v0104000.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22853536 22854392 +
3 domain predictions
1 GO term
LotjaGi6g1v0104000.4
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22853557 22854392 +
3 domain predictions
1 GO term
LotjaGi6g1v0104000.5
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22853557 22854474 +
3 domain predictions
1 GO term
LotjaGi6g1v0104000.6
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22853681 22854420 +
3 domain predictions
1 GO term
LotjaGi6g1v0104000.7
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 LjG1.1_chr6 22853681 22854474 +
3 domain predictions
1 GO term
LotjaGi6g1v0129300.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129300 LjG1.1_chr6 34027378 34027689 -
3 domain predictions
1 GO term
LotjaGi6g1v0129300.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129300 LjG1.1_chr6 34027378 34027689 -
3 domain predictions
1 GO term
LotjaGi6g1v0129400.1
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400 LjG1.1_chr6 34027807 34043369 +
3 domain predictions
1 GO term
LotjaGi6g1v0129400.2
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400 LjG1.1_chr6 34036000 34043369 +
3 domain predictions
1 GO term