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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 2134 results. Now displaying 11 of 43 with 50 rows per page. This search has taken 6.062s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3977170.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max] gi|356560829|ref|XP_003548689.1| chr1 47197596 47215688 +
3 domain predictions
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Lj1g3v4012960.1
n.a. PREDICTED: F-box protein At5g07610-like [Fragaria vesca subsp]. vesca] gi|470127633|ref|XP_004299772.1| chr1 47566752 47567939 +
2 domain predictions
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Lj1g3v4058580.1
n.a. Rpp4 candidate [Medicago truncatula] gi|357509125|ref|XP_003624851.1| chr1 47924452 47940208 +
3 domain predictions
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Lj1g3v4058600.1
n.a. Disease resistance protein [Medicago truncatula] gi|124359532|gb|ABN05954.1| chr1 47930888 47936114 +
3 domain predictions
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Lj1g3v4058640.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1-like [Cicer arietinum] gi|502160581|ref|XP_004511796.1| chr1 47952259 47953992 -
3 domain predictions
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Lj1g3v4139550.1
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502097266|ref|XP_004490952.1| chr1 49077128 49081303 -
2 domain predictions
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Lj1g3v4139550.2
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502097266|ref|XP_004490952.1| chr1 49077128 49081303 -
2 domain predictions
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Lj1g3v4139550.3
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502097266|ref|XP_004490952.1| chr1 49077128 49081303 -
2 domain predictions
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Lj1g3v4252300.1
n.a. PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820-like [Glycine max] gi|356572038|ref|XP_003554177.1| chr1 50206855 50211185 +
3 domain predictions
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Lj1g3v4289020.2
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940-like [Glycine max] gi|356572056|ref|XP_003554186.1| chr1 50519261 50522517 +
3 domain predictions
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Lj1g3v4304260.1
n.a. PREDICTED: polygalacturonase inhibitor-like [Cicer arietinum] gi|502109061|ref|XP_004493557.1| chr1 50630479 50631311 -
3 domain predictions
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Lj1g3v4315310.1
n.a. PREDICTED: polygalacturonase inhibitor-like [Glycine max] gi|356572074|ref|XP_003554195.1| chr1 50650237 50651594 -
3 domain predictions
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Lj1g3v4315330.1
n.a. PREDICTED: polygalacturonase inhibitor-like [Glycine max] gi|356572074|ref|XP_003554195.1| chr1 50657647 50659020 -
3 domain predictions
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Lj1g3v4316400.1
n.a. PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 2-like [Cicer arietinum] gi|502109101|ref|XP_004493566.1| chr1 50713517 50719144 -
3 domain predictions
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Lj1g3v4404370.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356570538|ref|XP_003553442.1| chr1 51333999 51335668 -
3 domain predictions
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Lj1g3v4434330.1
n.a. PREDICTED: F-box protein At4g02760-like isoform X1 [Cicer arietinum] gi|502109568|ref|XP_004493675.1| chr1 51754504 51762940 +
2 domain predictions
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Lj1g3v4434330.2
n.a. PREDICTED: F-box protein SKIP17-like [Glycine max] gi|356572196|ref|XP_003554256.1| chr1 51754504 51764437 +
2 domain predictions
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Lj1g3v4434330.3
n.a. PREDICTED: F-box protein SKIP17-like [Glycine max] gi|356572196|ref|XP_003554256.1| chr1 51754504 51762940 +
2 domain predictions
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Lj1g3v4435480.1
n.a. PREDICTED: F-box protein SKIP17-like [Glycine max] gi|356572196|ref|XP_003554256.1| chr1 51801711 51803852 +
2 domain predictions
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Lj1g3v4515870.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Solanum lycopersicum] gi|460404056|ref|XP_004247501.1| chr1 53126599 53130958 -
3 domain predictions
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Lj1g3v4528370.1
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Glycine max] gi|356570674|ref|XP_003553510.1| chr1 53294622 53298488 -
3 domain predictions
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Lj1g3v4528370.2
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Glycine max] gi|356570674|ref|XP_003553510.1| chr1 53294622 53298706 -
3 domain predictions
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Lj1g3v4538830.1
n.a. RNI-like superfamily protein [Arabidopsis thaliana] gi|42569177|ref|NP_179611.2| chr1 53559876 53566372 +
2 domain predictions
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Lj1g3v4538830.2
n.a. RNI-like superfamily protein [Arabidopsis thaliana] gi|42569177|ref|NP_179611.2| chr1 53559876 53566372 +
2 domain predictions
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Lj1g3v4538830.3
n.a. RNI-like superfamily protein [Arabidopsis thaliana] gi|42569177|ref|NP_179611.2| chr1 53560582 53566372 +
2 domain predictions
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Lj1g3v4578940.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357466395|ref|XP_003603482.1| chr1 54379729 54380432 -
2 domain predictions
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Lj1g3v4691570.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 55578062 55579323 -
3 domain predictions
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Lj1g3v4693100.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Cicer arietinum] gi|502111675|ref|XP_004494131.1| chr1 55784172 55787477 -
3 domain predictions
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Lj1g3v4730400.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502112140|ref|XP_004494248.1| chr1 56652576 56656895 -
3 domain predictions
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Lj1g3v4752780.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357438535|ref|XP_003589543.1| chr1 56827331 56829201 -
2 domain predictions
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Lj1g3v4764980.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356572671|ref|XP_003554490.1| chr1 57437725 57441080 +
2 domain predictions
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Lj1g3v4764990.1
n.a. F-box/leucine rich repeat protein [Phaseolus vulgaris] gi|319428659|gb|ADV56682.1| chr1 57437725 57441666 +
2 domain predictions
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Lj1g3v4765040.1
n.a. F-box/leucine rich repeat protein [Phaseolus vulgaris] gi|319428659|gb|ADV56682.1| chr1 57459045 57462739 -
2 domain predictions
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Lj1g3v4765050.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356572671|ref|XP_003554490.1| chr1 57459930 57462739 -
2 domain predictions
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Lj1g3v4765160.2
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357491185|ref|XP_003615880.1| chr1 57486713 57490120 -
2 domain predictions
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Lj1g3v4862870.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|270342098|gb|ACZ74681.1| chr1 58828508 58830352 -
2 domain predictions
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Lj1g3v4862870.2
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 58828508 58829337 -
2 domain predictions
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Lj1g3v4912210.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|270342108|gb|ACZ74691.1| chr1 59453200 59455037 -
2 domain predictions
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Lj1g3v4918600.1
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] gi|356505803|ref|XP_003521679.1| chr1 59655230 59659471 +
2 domain predictions
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Lj1g3v5020750.1
n.a. CM0545.400.nc [Lotus japonicus] gi|164605529|dbj|BAF98595.1| chr1 61044612 61045833 -
3 domain predictions
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Lj1g3v5020760.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357493485|ref|XP_003617031.1| chr1 61045989 61047517 -
3 domain predictions
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Lj1g3v5061080.1
n.a. PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1| chr1 62029906 62032098 +
3 domain predictions
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Lj2g3v0561100.1
n.a. Nodulation receptor kinase [Medicago truncatula] gi|357499011|ref|XP_003619794.1| chr2 7443803 7447081 -
3 domain predictions
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Lj2g3v0561100.2
n.a. Nodulation receptor kinase [Medicago truncatula] gi|357499011|ref|XP_003619794.1| chr2 7443803 7447081 -
3 domain predictions
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Lj2g3v0561190.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356561798|ref|XP_003549165.1| chr2 7495060 7498988 +
3 domain predictions
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Lj2g3v0561280.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7556391 7558152 -
2 domain predictions
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Lj2g3v0571390.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|270342098|gb|ACZ74681.1| chr2 7711866 7712642 +
2 domain predictions
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Lj2g3v0571400.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7713516 7714532 +
2 domain predictions
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Lj2g3v0571450.2
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7727207 7729043 +
2 domain predictions
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Lj2g3v0571600.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr2 7775181 7776116 +
2 domain predictions
 –