Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005135
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 173 results. Now displaying 2 of 4 with 50 rows per page. This search has taken 5.539s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2520120.2
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family [Theobroma cacao] gi|508703634|gb|EOX95530.1| chr3 31044380 31047349 -
2 domain predictions
 –
Lj4g3v0149320.1
n.a. PREDICTED: tyrosyl-DNA phosphodiesterase 2-like isoform 2 [Glycine max] gi|356563045|ref|XP_003549776.1| chr4 1547411 1550287 -
4 domain predictions
 –
Lj4g3v0149320.2
n.a. PREDICTED: tyrosyl-DNA phosphodiesterase 2-like isoform 2 [Glycine max] gi|356563045|ref|XP_003549776.1| chr4 1548017 1550287 -
4 domain predictions
 –
Lj4g3v1037650.1
n.a. PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1| chr4 14837862 14846302 +
3 domain predictions
 –
Lj4g3v1037650.2
n.a. PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1| chr4 14837862 14846302 +
4 domain predictions
 –
Lj4g3v1154250.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 2-like [Glycine max] gi|356563443|ref|XP_003549972.1| chr4 17331889 17338469 -
4 domain predictions
 –
Lj4g3v1154250.2
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 2-like [Glycine max] gi|356563443|ref|XP_003549972.1| chr4 17331889 17338182 -
4 domain predictions
 –
Lj4g3v1983570.1
n.a. DNAse I-like superfamily protein isoform 3 [Theobroma cacao] gi|508782292|gb|EOY29548.1| chr4 27628483 27632443 +
2 domain predictions
 –
Lj4g3v1983570.2
n.a. DNAse I-like superfamily protein isoform 4 [Theobroma cacao] gi|508782293|gb|EOY29549.1| chr4 27628483 27632443 +
2 domain predictions
 –
Lj4g3v2337910.1
n.a. Very similar to retrotransposon reverse transcriptase [Arabidopsis thaliana] gi|6587849|gb|AAF18538.1|AC006551_24 chr4 32383360 32384171 +
2 domain predictions
 –
Lj4g3v2403200.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356528190|ref|XP_003532688.1| chr4 33367445 33371241 -
4 domain predictions
 –
Lj4g3v2403200.2
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356528190|ref|XP_003532688.1| chr4 33367445 33371241 -
3 domain predictions
 –
Lj4g3v2820110.1
n.a. bristled-like protein [Trifolium repens] gi|289540945|gb|ADD09615.1| chr4 37651341 37655175 +
3 domain predictions
 –
Lj4g3v3095000.1
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Glycine max] gi|356511339|ref|XP_003524384.1| chr4 41067404 41074918 -
2 domain predictions
 –
Lj4g3v3095000.2
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Glycine max] gi|356511339|ref|XP_003524384.1| chr4 41067404 41074918 -
4 domain predictions
 –
Lj4g3v3095000.3
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Glycine max] gi|356511339|ref|XP_003524384.1| chr4 41067919 41074918 -
3 domain predictions
 –
Lj5g3v0082990.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 11-like [Glycine max] gi|356553905|ref|XP_003545291.1| chr5 454955 457252 +
3 domain predictions
 –
Lj5g3v0539930.1
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 6-like [Glycine max] gi|356554329|ref|XP_003545500.1| chr5 6407021 6419475 -
4 domain predictions
 –
Lj5g3v0614830.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356536877|ref|XP_003536959.1| chr5 7398769 7409486 -
4 domain predictions
 –
Lj5g3v0614830.3
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356545941|ref|XP_003541391.1| chr5 7398769 7407184 -
4 domain predictions
 –
Lj5g3v0746910.1
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max] gi|356530679|ref|XP_003533908.1| chr5 10864021 10871086 +
4 domain predictions
 –
Lj5g3v0868340.1
n.a. PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox protein-like [Glycine max] gi|356537505|ref|XP_003537267.1| chr5 12483035 12491362 +
4 domain predictions
 –
Lj5g3v1001980.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Cicer arietinum] gi|502115353|ref|XP_004495183.1| chr5 15582455 15587472 -
4 domain predictions
 –
Lj5g3v1275070.1
n.a. PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cicer arietinum] gi|502116639|ref|XP_004495528.1| chr5 20178567 20194739 +
3 domain predictions
 –
Lj5g3v1275070.2
n.a. PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cicer arietinum] gi|502116639|ref|XP_004495528.1| chr5 20178567 20194227 +
4 domain predictions
 –
Lj5g3v1694630.1
n.a. DNAse I-like superfamily protein [Theobroma cacao] gi|508702974|gb|EOX94870.1| chr5 23988609 23993453 -
4 domain predictions
 –
Lj5g3v1913760.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 1-like [Glycine max] gi|356535745|ref|XP_003536404.1| chr5 27082520 27094938 +
3 domain predictions
 –
Lj5g3v2045610.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356535991|ref|XP_003536524.1| chr5 29245457 29250643 +
4 domain predictions
 –
Lj5g3v2133790.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 12-like isoform X2 [Cicer arietinum] gi|502126642|ref|XP_004499384.1| chr5 30656468 30663085 +
4 domain predictions
 –
Lj6g3v1752820.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] gi|124359510|gb|ABD28627.2| chr6 19599784 19600763 -
3 domain predictions
 –
Lj6g3v1903460.1
n.a. DNAse I-like superfamily protein [Theobroma cacao] gi|508714433|gb|EOY06330.1| chr6 21350082 21353983 -
4 domain predictions
 –
Lj6g3v1903460.2
n.a. DNAse I-like superfamily protein [Theobroma cacao] gi|508702974|gb|EOX94870.1| chr6 21350082 21352949 -
3 domain predictions
 –
Lj6g3v1903460.3
n.a. DNAse I-like superfamily protein [Theobroma cacao] gi|508714433|gb|EOY06330.1| chr6 21350650 21353983 -
3 domain predictions
 –
LotjaGi1g1v0127100.1
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family; TAIR: AT5G54130.4 Calcium-binding endonuclease/exonuclease/phosphatase family; Swiss-Prot: sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1g02270; TrEMBL-Plants: tr|A0A1J7GVC6|A0A1J7GVC6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0127100 LjG1.1_chr1 20293072 20304165 -
2 domain predictions
 –
LotjaGi1g1v0206900_LC.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|F4NCF7|F4NCF7_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0206900_LC LjG1.1_chr1 45086350 45094135 -
2 domain predictions
 –
LotjaGi1g1v0231200.1
n.a. DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT3G48425.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q5XF07|APE1L_ARATH DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|I1JXF2|I1JXF2_SOYBN DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi1g1v0231200 LjG1.1_chr1 54177619 54185018 +
2 domain predictions
 –
LotjaGi1g1v0236800_LC.1
n.a. Transposon TX1 uncharacterized; TAIR: AT1G40390.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A0A151U069|A0A151U069_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0236800_LC LjG1.1_chr1 56396498 56397927 -
2 domain predictions
 –
LotjaGi1g1v0301200.1
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family; TAIR: AT5G54130.2 Calcium-binding endonuclease/exonuclease/phosphatase family; Swiss-Prot: sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1g02270; TrEMBL-Plants: tr|K7KUX2|K7KUX2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0301200 LjG1.1_chr1 73477118 73482110 -
2 domain predictions
 –
LotjaGi1g1v0301200.2
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family; TAIR: AT5G54130.2 Calcium-binding endonuclease/exonuclease/phosphatase family; Swiss-Prot: sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1g02270; TrEMBL-Plants: tr|I1KB30|I1KB30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0301200 LjG1.1_chr1 73477158 73482054 -
2 domain predictions
 –
LotjaGi1g1v0301200.3
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family; TAIR: AT5G54130.2 Calcium-binding endonuclease/exonuclease/phosphatase family; Swiss-Prot: sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1g02270; TrEMBL-Plants: tr|K7KUX2|K7KUX2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0301200 LjG1.1_chr1 73477709 73481614 -
2 domain predictions
 –
LotjaGi1g1v0302600_LC.1
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT1G40390.1 DNAse I-like superfamily protein; Swiss-Prot: sp|G5ECQ2|FRIZ2_CAEEL Frizzled-2; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0302600_LC LjG1.1_chr1 73778393 73786711 -
2 domain predictions
 –
LotjaGi1g1v0344200_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|A5CAA2|A5CAA2_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0344200_LC LjG1.1_chr1 80998453 81003086 -
2 domain predictions
 –
LotjaGi1g1v0570500_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (ChrM); Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0570500_LC LjG1.1_chr1 110403053 110409094 -
2 domain predictions
 –
LotjaGi1g1v0627300_LC.3
n.a. LINE-1 reverse transcriptase like; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|A0A151RYW3|A0A151RYW3_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi1g1v0627300_LC LjG1.1_chr1 117647751 117651694 +
2 domain predictions
 –
LotjaGi1g1v0697900.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase; TAIR: AT2G37440.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q0WT19|IP5P8_ARATH Type I inositol polyphosphate 5-phosphatase 8; TrEMBL-Plants: tr|K7KFP0|K7KFP0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0697900 LjG1.1_chr1 126578653 126586437 +
2 domain predictions
 –
LotjaGi1g1v0697900.2
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase; TAIR: AT2G37440.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q0WT19|IP5P8_ARATH Type I inositol polyphosphate 5-phosphatase 8; TrEMBL-Plants: tr|K7KFP0|K7KFP0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0697900 LjG1.1_chr1 126579384 126583863 +
2 domain predictions
 –
LotjaGi1g1v0743500.1
n.a. Carbon catabolite repressor 4-like protein; TAIR: AT3G58580.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2; TrEMBL-Plants: tr|I1JQF1|I1JQF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743500 LjG1.1_chr1 131705857 131712995 -
2 domain predictions
 –
LotjaGi1g1v0743500.2
n.a. Carbon catabolite repressor 4-like protein; TAIR: AT3G58580.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2; TrEMBL-Plants: tr|V7CXW0|V7CXW0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0743500 LjG1.1_chr1 131707283 131712481 -
2 domain predictions
 –
LotjaGi1g1v0743500.3
n.a. Carbon catabolite repressor 4-like protein; TAIR: AT3G58580.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2; TrEMBL-Plants: tr|I1JQF1|I1JQF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743500 LjG1.1_chr1 131707283 131712481 -
2 domain predictions
 –
LotjaGi1g1v0743500.4
n.a. Carbon catabolite repressor 4-like protein; TAIR: AT3G58560.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8W0Z9|CCR4A_ARATH Carbon catabolite repressor protein 4 homolog 1; TrEMBL-Plants: tr|I1JQF1|I1JQF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743500 LjG1.1_chr1 131707283 131712481 -
2 domain predictions
 –