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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029052
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 237 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 7.408s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v3711310.1
n.a. purple acid phosphatase 14 [Glycine max] gi|383385895|gb|AFH08750.1| chr3 44966194 44969579 -
3 domain predictions
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Lj4g3v1388220.1
n.a. PREDICTED: probable inactive purple acid phosphatase 27-like [Cicer arietinum] gi|502176175|ref|XP_004515814.1| chr4 21259762 21265265 +
3 domain predictions
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Lj4g3v1414250.1
n.a. PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [Glycine max] gi|356565248|ref|XP_003550854.1| chr4 22160607 22161893 +
3 domain predictions
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Lj4g3v1415260.1
n.a. PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [Glycine max] gi|356513642|ref|XP_003525520.1| chr4 22162939 22163572 +
3 domain predictions
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Lj4g3v1909920.1
n.a. PREDICTED: bifunctional purple acid phosphatase 26-like isoform X1 [Cicer arietinum] gi|502151434|ref|XP_004508439.1| chr4 27059484 27065168 -
3 domain predictions
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Lj4g3v2404250.1
n.a. PREDICTED: purple acid phosphatase 8-like [Cicer arietinum] gi|502141686|ref|XP_004504592.1| chr4 33384642 33390665 -
3 domain predictions
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Lj4g3v2405410.1
n.a. PREDICTED: purple acid phosphatase 8-like [Glycine max] gi|356525044|ref|XP_003531137.1| chr4 33413351 33417850 +
3 domain predictions
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Lj4g3v2603900.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Glycine max] gi|356512485|ref|XP_003524949.1| chr4 34975993 34983070 +
3 domain predictions
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Lj4g3v2604120.1
n.a. Vacuolar protein sorting [Medicago truncatula] gi|357493205|ref|XP_003616891.1| chr4 35092536 35095310 -
3 domain predictions
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Lj4g3v2991200.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP1-like [Cicer arietinum] gi|502139166|ref|XP_004503668.1| chr4 39552729 39556911 -
3 domain predictions
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Lj4g3v2991200.2
n.a. RecName: Full=Serine/threonine-protein phosphatase PP1gi|575672|emb|CAA56766.1| potentially catalitic subunit of the ser /thr protein phosphatase 1 [Medicago sativa subsp]. x varia] gi|1346763|sp|P48488.1|PP1_MEDVA chr4 39552729 39554991 -
3 domain predictions
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Lj5g3v0034260.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1 [Theobroma cacao] gi|508722651|gb|EOY14548.1| chr5 68034 78886 -
3 domain predictions
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Lj5g3v0034260.2
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1 [Theobroma cacao] gi|508722651|gb|EOY14548.1| chr5 71424 78886 -
3 domain predictions
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Lj5g3v0713360.1
n.a. calcineurin-like phosphoesterase [Glycine max] gi|351721901|ref|NP_001237737.1| chr5 10716525 10720629 -
3 domain predictions
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Lj5g3v1170950.1
n.a. protein phosphatase 1 catalitic subunit [Medicago sativa] gi|3176076|emb|CAA05493.1| chr5 18638561 18643469 +
3 domain predictions
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Lj5g3v1341890.1
n.a. catalytic subunit of protein phosphatase 1 [Vicia faba] gi|114213458|dbj|BAF31132.1| chr5 20540441 20546950 +
3 domain predictions
 –
Lj5g3v1341900.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP1-like [Cicer arietinum] gi|502116728|ref|XP_004495569.1| chr5 20540441 20547638 +
3 domain predictions
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Lj5g3v1681440.1
n.a. Serine/threonine protein phosphatase [Medicago truncatula] gi|357442633|ref|XP_003591594.1| chr5 23874799 23889323 -
3 domain predictions
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Lj5g3v1681440.2
n.a. PREDICTED: serine/threonine-protein phosphatase BSL1-like [Glycine max] gi|356500242|ref|XP_003518942.1| chr5 23874799 23900121 -
3 domain predictions
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Lj5g3v2263930.1
n.a. PREDICTED: phytochrome-associated serine/threonine-protein phosphatase-like [Cicer arietinum] gi|502123393|ref|XP_004498094.1| chr5 33029484 33035533 +
3 domain predictions
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Lj6g3v0030130.1
n.a. n.a. chr6 614538 619079 -
3 domain predictions
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Lj6g3v0920240.1
n.a. purple acid phosphatases [Glycine max] gi|304421406|gb|ADM32502.1| chr6 9207187 9208888 -
3 domain predictions
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Lj6g3v0920250.1
n.a. Purple acid phosphatase [Medicago truncatula] gi|357459553|ref|XP_003600057.1| chr6 9209110 9210908 -
3 domain predictions
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Lj6g3v0925630.1
n.a. PREDICTED: serine/threonine-protein phosphatase 5-like isoform X2 [Cicer arietinum] gi|502128536|ref|XP_004499995.1| chr6 9674307 9682813 -
3 domain predictions
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Lj6g3v1078450.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana] gi|18417714|ref|NP_567863.1| chr6 12833839 12867907 -
3 domain predictions
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Lj6g3v1329860.1
n.a. PREDICTED: probable inactive purple acid phosphatase 28-like [Glycine max] gi|356530342|ref|XP_003533741.1| chr6 15823682 15825935 -
3 domain predictions
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Lj6g3v1329860.2
n.a. PREDICTED: probable inactive purple acid phosphatase 28-like [Glycine max] gi|356530342|ref|XP_003533741.1| chr6 15823682 15825935 -
3 domain predictions
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LotjaGi1g1v0022900.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT5G55260.1 protein phosphatase X 2; Swiss-Prot: sp|P48528|PPX2_ARATH Serine/threonine-protein phosphatase PP-X isozyme 2; TrEMBL-Plants: tr|G7K499|G7K499_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0022900 LjG1.1_chr1 2787757 2792383 +
2 domain predictions
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LotjaGi1g1v0022900.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT5G55260.1 protein phosphatase X 2; Swiss-Prot: sp|P48528|PPX2_ARATH Serine/threonine-protein phosphatase PP-X isozyme 2; TrEMBL-Plants: tr|G7K499|G7K499_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0022900 LjG1.1_chr1 2787939 2791223 +
2 domain predictions
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LotjaGi1g1v0022900.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT5G55260.1 protein phosphatase X 2; Swiss-Prot: sp|P48528|PPX2_ARATH Serine/threonine-protein phosphatase PP-X isozyme 2; TrEMBL-Plants: tr|A0A1J7GQT7|A0A1J7GQT7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0022900 LjG1.1_chr1 2787950 2791419 +
2 domain predictions
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LotjaGi1g1v0032700.1
n.a. Purple acid phosphatase; TAIR: AT3G20500.1 purple acid phosphatase 18; Swiss-Prot: sp|Q9LJU7|PPA18_ARATH Purple acid phosphatase 18; TrEMBL-Plants: tr|I3SLH6|I3SLH6_LOTJA Purple acid phosphatase; Found in the gene: LotjaGi1g1v0032700 LjG1.1_chr1 4177468 4182225 +
2 domain predictions
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LotjaGi1g1v0032700.2
n.a. Purple acid phosphatase; TAIR: AT3G20500.1 purple acid phosphatase 18; Swiss-Prot: sp|Q9LJU7|PPA18_ARATH Purple acid phosphatase 18; TrEMBL-Plants: tr|I3SLH6|I3SLH6_LOTJA Purple acid phosphatase; Found in the gene: LotjaGi1g1v0032700 LjG1.1_chr1 4177837 4179779 +
2 domain predictions
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LotjaGi1g1v0086000.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48484|PP14_ARATH Serine/threonine-protein phosphatase PP1 isozyme 4; TrEMBL-Plants: tr|C6TII4|C6TII4_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0086000 LjG1.1_chr1 12453159 12459606 +
2 domain predictions
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LotjaGi1g1v0086000.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48484|PP14_ARATH Serine/threonine-protein phosphatase PP1 isozyme 4; TrEMBL-Plants: tr|C6TII4|C6TII4_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0086000 LjG1.1_chr1 12453386 12455110 +
2 domain predictions
 –
LotjaGi1g1v0086000.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48484|PP14_ARATH Serine/threonine-protein phosphatase PP1 isozyme 4; TrEMBL-Plants: tr|C6TII4|C6TII4_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0086000 LjG1.1_chr1 12453407 12455234 +
2 domain predictions
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LotjaGi1g1v0086000.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48484|PP14_ARATH Serine/threonine-protein phosphatase PP1 isozyme 4; TrEMBL-Plants: tr|C6TII4|C6TII4_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0086000 LjG1.1_chr1 12453407 12455275 +
2 domain predictions
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LotjaGi1g1v0253900.1
n.a. Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase; TAIR: AT4G24730.1 manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein; Swiss-Prot: sp|Q8H5F8|ADPRM_ORYSJ Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase; TrEMBL-Plants: tr|V7AXG9|V7AXG9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0253900 LjG1.1_chr1 61024858 61029095 +
2 domain predictions
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LotjaGi1g1v0253900.2
n.a. Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase; TAIR: AT4G24730.1 manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein; Swiss-Prot: sp|Q8H5F8|ADPRM_ORYSJ Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase; TrEMBL-Plants: tr|V7AXG9|V7AXG9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0253900 LjG1.1_chr1 61027639 61028601 +
2 domain predictions
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LotjaGi1g1v0375600.2
n.a. Lariat debranching enzyme; TAIR: AT4G31770.1 debranching enzyme 1; Swiss-Prot: sp|Q94K01|DBR1_ARATH Lariat debranching enzyme; TrEMBL-Plants: tr|I1JU50|I1JU50_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375600 LjG1.1_chr1 85398349 85402114 -
2 domain predictions
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LotjaGi1g1v0423700.1
n.a. Purple acid phosphatase; TAIR: AT2G27190.1 purple acid phosphatase 12; Swiss-Prot: sp|Q9SDZ9|PPAF2_IPOBA Purple acid phosphatase 2; TrEMBL-Plants: tr|K7KSQ8|K7KSQ8_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi1g1v0423700 LjG1.1_chr1 91771392 91774100 -
2 domain predictions
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LotjaGi1g1v0423700.2
n.a. Purple acid phosphatase; TAIR: AT2G16430.2 purple acid phosphatase 10; Swiss-Prot: sp|Q9SDZ9|PPAF2_IPOBA Purple acid phosphatase 2; TrEMBL-Plants: tr|K7KSQ8|K7KSQ8_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi1g1v0423700 LjG1.1_chr1 91771589 91774100 -
2 domain predictions
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LotjaGi1g1v0488000.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein; TAIR: AT3G03305.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q0WVZ1|Y3330_ARATH Putative metallophosphoesterase At3g03305; TrEMBL-Plants: tr|G7KSE4|G7KSE4_MEDTR Calcineurin-like metallo-phosphoesterase superfamily protein; Found in the gene: LotjaGi1g1v0488000 LjG1.1_chr1 100103991 100108644 +
2 domain predictions
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LotjaGi1g1v0676800.1
n.a. Purple acid phosphatase; TAIR: AT3G52780.1 Purple acid phosphatases superfamily protein; Swiss-Prot: sp|Q9LXI7|PPA20_ARATH Probable purple acid phosphatase 20; TrEMBL-Plants: tr|G7L619|G7L619_MEDTR Purple acid phosphatase; Found in the gene: LotjaGi1g1v0676800 LjG1.1_chr1 124360595 124364030 -
2 domain predictions
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LotjaGi1g1v0676900.1
n.a. Purple acid phosphatase; TAIR: AT3G52820.1 purple acid phosphatase 22; Swiss-Prot: sp|Q8S340|PPA22_ARATH Purple acid phosphatase 22; TrEMBL-Plants: tr|K7KG04|K7KG04_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi1g1v0676900 LjG1.1_chr1 124372471 124375526 +
2 domain predictions
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LotjaGi1g1v0676900.2
n.a. Purple acid phosphatase; TAIR: AT3G52820.1 purple acid phosphatase 22; Swiss-Prot: sp|Q8S340|PPA22_ARATH Purple acid phosphatase 22; TrEMBL-Plants: tr|K7MZ83|K7MZ83_SOYBN Purple acid phosphatase; Found in the gene: LotjaGi1g1v0676900 LjG1.1_chr1 124372675 124375434 +
2 domain predictions
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LotjaGi1g1v0743100.1
n.a. Serine/threonine-protein phosphatase; TAIR: AT3G58500.1 protein phosphatase 2A-4; Swiss-Prot: sp|Q06009|PP2A_MEDSA Serine/threonine-protein phosphatase PP2A catalytic subunit; TrEMBL-Plants: tr|A0A0S3S0M7|A0A0S3S0M7_PHAAN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0743100 LjG1.1_chr1 131666893 131673348 +
2 domain predictions
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LotjaGi1g1v0743100.2
n.a. Serine/threonine-protein phosphatase; TAIR: AT3G58500.1 protein phosphatase 2A-4; Swiss-Prot: sp|Q06009|PP2A_MEDSA Serine/threonine-protein phosphatase PP2A catalytic subunit; TrEMBL-Plants: tr|G8A1A9|G8A1A9_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0743100 LjG1.1_chr1 131667604 131672536 +
2 domain predictions
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LotjaGi1g1v0743100.3
n.a. Serine/threonine-protein phosphatase; TAIR: AT2G42500.2 protein phosphatase 2A-3; Swiss-Prot: sp|P48578|PP2A3_ARATH Serine/threonine-protein phosphatase PP2A-3 catalytic subunit; TrEMBL-Plants: tr|F4IN36|F4IN36_ARATH Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0743100 LjG1.1_chr1 131667604 131672536 +
2 domain predictions
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LotjaGi1g1v0743100.4
n.a. Serine/threonine-protein phosphatase; TAIR: AT3G58500.1 protein phosphatase 2A-4; Swiss-Prot: sp|Q06009|PP2A_MEDSA Serine/threonine-protein phosphatase PP2A catalytic subunit; TrEMBL-Plants: tr|I1NAY9|I1NAY9_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0743100 LjG1.1_chr1 131667604 131672536 +
2 domain predictions
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LotjaGi1g1v0743100.5
n.a. Serine/threonine-protein phosphatase; TAIR: AT3G58500.1 protein phosphatase 2A-4; Swiss-Prot: sp|Q06009|PP2A_MEDSA Serine/threonine-protein phosphatase PP2A catalytic subunit; TrEMBL-Plants: tr|A0A0S3S0M7|A0A0S3S0M7_PHAAN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0743100 LjG1.1_chr1 131667604 131672536 +
2 domain predictions
 –