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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0018400 |
| Transcript ID | LotjaGi1g1v0018400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2256132..2259513) extracted from Lotus japonicus Gifu genome v1.2.
GGGCTTTTACTTTGGGCCTCAAAACTGAAACCCCAAAACCCTAATTCTTAAACCCTAATTTGAGCTATAAAACCCTCGTT TCTCTATCAACAATTTCATTCCTGCTTTCGTCGTCGATATTCAATCCGGTAGCAGCCGCTTCACACCATCTCTCTTCAAG CTCTCGAAGATGGTTCCTCCTCCTAGAGGTAACAGAACAAACTCATCAATGAAAGTGTTGTTTTTTGTTGCTTAAATGTA TTGAAAGTTGAAACAAAGTGGGTTTTCGAATTCTTTGAATTTGCAGACAGTAATTTGCTAAAAGGAATGATTTTTGTTTA CTATGTAGAGATTAACGAAATGGGTTTTTGAAATCAGCGTTTTTTGATGAGTATTGTGTTTGAATTTGTGCAGGTCGTGG TGGTGGTGGTGGATTTAGGGGAAGGGGTGATAGAGGAAGAGGGAGAGGTGATGGAGGAGGAAGAGGAGGAGGTAGAGGTA CCCCTTTTAAGGCACGAGGTGGCGGTAGAGGAGTAGGAGGAGGCAGGGGTGGCCGAGGAGGAGGCCGTGGTGGCAGAGGA GGAGGAATGAAGGGAGGGAGCAGAGTTGTTGTTGAGCCTCACAGACATGAGGGTATTTTCATTGCTAAGGGTGGTAAAGA AGATGCTCTTGTTACTAAGAATCTGGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGGTTACTGTTCAGGTAATTTCAT TCTCATTGACACTGTATAGTTTGATGATTTGACATTGGATTTGCTTAAAACATGCATGAAAATAGTATTTTAGGTTTTGT TAGTTTTCTCAGTTAGCTTTTGGTTAGCTTCATATACTGGATTATGCATTAATGTATTATGTTCAAAGCTTTCATAGGTA TTTTTCTGTTTATGTTGATTTCAATGTCAGCTAATTCCATGAAACCTAGGCATATTTTCTTCACTTAGCTTAATTGTTTT TCATAGGATTTATTTATATTCCCCAATGATCTTGTGACACATGAATAATTTACATTCTGCAGAAAGAGGATGGTACAAAA GAGGAATATAGAGTTTGGAATCCTTTCCGCTCCAAGTTGGCTGCTGCCATCCTTGGTGGGGTTGACAACATATGGATTGT AAGTAGTTTCTGCGCCTTATAACCTGTGTTGTACCTTAGCATTGTGCTCTAGATAGCAGTATATTGACATCTTTTTTTGT TTATTGCATTGTTCTACTATAGAAACCTGGAGCCAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACTGTTTCTCATG TGTCTGACATTGTTGGTCCAGTAAGTACCAAATCAATGTTGGATAATCATTACACTTAGTGTTAATAGCTGATCTTAATA TGCTTTTTTTTTTCTATATAGACCGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAGTGGGCGTGATTTGGTCAATAT GGCAAAGAAGCGTACCAATGTTATACCTATTATTGAGGACGCTAGACATCCAGCTAAGTACAGGATGTTGGTTGGGATGG TAGATGTGGTATTTTCTGATGTTGCTCAACCTGATCAGGTTTGGTCTTAGTTTCTTATTGATATATTTTAAAAGAAGTCA CTATACATGATACCTGTTGAGGATGGTGTCTGCCTCCTTTGTCTTTAAAGCCTGTAGTGTTCCTTTGTATATATTTACAC CAATTTTAATCTCTATAGTTCATTTGATTTCAAACATTCCTTCTGTTTTTTGGGCTCTCAAATATAAAGTCATCTAACTG TGAGAGTTATGCTATATCTTCTGTGTAGTATGACTTCTGAATATGTATTTAAAGGTTGTTATTTTATATGTACGTAATTA TATGCAGTATATTATCTAACTTGTTGTAATTTAGCAATAACAATTTGCTATCCTGCTTTAGCAATCTATGCCACTATCCT TGATTGACAACTTTGTTTCTACTCACATTTGGTTCCTACTTGTCCTTTTGGCATGTCTATATATCTTTTAAACTTCCCTT TTCCCTTTTCTTTTATCTACTTTTTCTCACAAATTTCTTTTTTTCATGCCTGCCATTCTCTTAAACTACTTACTACTTTT GTTTAATTGAATTTGTTTTTTTTCATTCTTGTCTGTGTCTCTATCTGTGCATATGATGAGTTTACTCGGATTCCCCTTCA AGACTTCCTGGCTGATGTGAAACCGAGATTCTGATGCACATCAGTTTCTGTTGTTATTTGTTCTGTTTTGTTTTGTCATG CTTTAGCTTAAAATTGATGAAATTGCTGGTGCAAGAATGAGTTCTCTATGGGATTTTAATTTTTTATTTTTACCTTTGCT AGTAATGAACTTAAATAAGAGTTTCTGGTTACTCTATAATGTAAGTTCTATTTATGCTATTTTCATGACCATTGCAGGCA AGAATTCTAGGACTGAATGCTTCATATTTTCTCAAAACAGGAGGTCATTTTGTCATTTCAATCAAGGTTTGTTCTGAAAT CAAATCTTGCTTTCACTTGCACAGTTGTGATTTGTATCACACTAAGTAGTTGCACATCTAACACTGCAAACAGGTCAATT TTTGTTATCTGGGTTATTGAAGTGTAATGGCTCTTAAGTTCTAATTTGCTCTTTGATTTTCCCAATCATACTCACTTAAC TTAATTTGCTCCTCAGGCAAACTGCATAGATTCCACTGTCCCTGCTGAGACAGTCTTTGTTAATGAAGTGAACAAGCTGA AGGCAGATCAGTTTAAGCCTGCTGAGCAAGTCACCCTTGAACCCTTTGAGCGTGACCATGCCTGTGTTGTTGGTGGATAC AGATTGTCAAAGAAGAAGAAAGATGCTGAATAGATTGAATGCTTTTGAAAAGGCATGTATTAATGTATTTCTAGCAAATA CCAAGTAGTAATGTGTTATTTCAGTGAGACTCTAGATTTCATTGTCTTCATTTTGTCTCCAAGATAAGGCTGGGATTATC AAACATGTTCCAATTTTTGGTAGTTATTTTTCGTTAGTTGCTTTTGGCTGAATTTGTTGGCTTTTTGGTCTCTATTTTTT AAAGGGTAATGCTTGGCGTATATCTGGATTAAGATTTGCTCAAAATTGCATTCTCCGGGTTTGGGGCGTGCGTCAACAAA ATGCAATCTCATTTTTTTTTAAAAAATTAATTGAATTAAAACTGAATATTGAACATGTGAAATATTGATTAATGTTTTAA ATTTCCTTTTGGATTTTATTTTTGTTGATTTAGAGACAAACTGAATTTTAAACATTTTATTTATTTATAAGTTTGTTGTA TGAAAATTAGAATGATGAACTTATGTTAAGATAAAAAAACTATAACCGTTATATGTATAATATTTATATTTATATTTATA TAGGATATGATCTGAAAATCAT
CDS sequence (LotjaGi1g1v0018400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCCTCCTCCTAGAGGTCGTGGTGGTGGTGGTGGATTTAGGGGAAGGGGTGATAGAGGAAGAGGGAGAGGTGATGG AGGAGGAAGAGGAGGAGGTAGAGGTACCCCTTTTAAGGCACGAGGTGGCGGTAGAGGAGTAGGAGGAGGCAGGGGTGGCC GAGGAGGAGGCCGTGGTGGCAGAGGAGGAGGAATGAAGGGAGGGAGCAGAGTTGTTGTTGAGCCTCACAGACATGAGGGT ATTTTCATTGCTAAGGGTGGTAAAGAAGATGCTCTTGTTACTAAGAATCTGGTTCCTGGTGAAGCTGTTTACAATGAGAA AAGGGTTACTGTTCAGAAAGAGGATGGTACAAAAGAGGAATATAGAGTTTGGAATCCTTTCCGCTCCAAGTTGGCTGCTG CCATCCTTGGTGGGGTTGACAACATATGGATTAAACCTGGAGCCAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACT GTTTCTCATGTGTCTGACATTGTTGGTCCAACCGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAGTGGGCGTGATTT GGTCAATATGGCAAAGAAGCGTACCAATGTTATACCTATTATTGAGGACGCTAGACATCCAGCTAAGTACAGGATGTTGG TTGGGATGGTAGATGTGGTATTTTCTGATGTTGCTCAACCTGATCAGGCAAGAATTCTAGGACTGAATGCTTCATATTTT CTCAAAACAGGAGGTCATTTTGTCATTTCAATCAAGGCAAACTGCATAGATTCCACTGTCCCTGCTGAGACAGTCTTTGT TAATGAAGTGAACAAGCTGAAGGCAGATCAGTTTAAGCCTGCTGAGCAAGTCACCCTTGAACCCTTTGAGCGTGACCATG CCTGTGTTGTTGGTGGATACAGATTGTCAAAGAAGAAGAAAGATGCTGAATAG
Protein sequence (LotjaGi1g1v0018400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPPPRGRGGGGGFRGRGDRGRGRGDGGGRGGGRGTPFKARGGGRGVGGGRGGRGGGRGGRGGGMKGGSRVVVEPHRHEG IFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTT VSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYF LKTGGHFVISIKANCIDSTVPAETVFVNEVNKLKADQFKPAEQVTLEPFERDHACVVGGYRLSKKKKDAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 70 | 70 | - | – | |
| PANTHER | 9 | 307 | 299 | 6.5E-151 | – | |
| PANTHER | 9 | 307 | 299 | 6.5E-151 | – | |
| MobiDBLite | 13 | 27 | 15 | - | – | |
| PIRSF | 21 | 304 | 284 | 1.4E-119 | ||
| Gene3D | 68 | 124 | 57 | 1.3E-26 | – | |
| Pfam | 73 | 301 | 229 | 3.1E-109 | ||
| SMART | 73 | 302 | 230 | 8.0E-173 | ||
| SUPERFAMILY | 73 | 301 | 229 | 6.26E-52 | ||
| Hamap | 88 | 301 | 214 | 37.082 | ||
| PRINTS | 92 | 111 | 20 | 2.2E-89 | ||
| PRINTS | 120 | 139 | 20 | 2.2E-89 | ||
| Gene3D | 125 | 302 | 178 | 1.9E-89 | – | |
| PRINTS | 147 | 168 | 22 | 2.2E-89 | ||
| PRINTS | 172 | 189 | 18 | 2.2E-89 | ||
| ProSitePatterns | 172 | 186 | 15 | - | ||
| PRINTS | 197 | 226 | 30 | 2.2E-89 | ||
| PRINTS | 227 | 256 | 30 | 2.2E-89 | ||
| PRINTS | 279 | 300 | 22 | 2.2E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0018400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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