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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0018400 |
| Transcript ID | LotjaGi1g1v0018400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2256681..2259134) extracted from Lotus japonicus Gifu genome v1.2.
TTGAATTTGTGCAGGTCGTGGTGGTGGTGGTGGATTTAGGGGAAGGGGTGATAGAGGAAGAGGGAGAGGTGATGGAGGAG GAAGAGGAGGAGGTAGAGGTACCCCTTTTAAGGCACGAGGTGGCGGTAGAGGAGTAGGAGGAGGCAGGGGTGGCCGAGGA GGAGGCCGTGGTGGCAGAGGAGGAGGAATGAAGGGAGGGAGCAGAGTTGTTGTTGAGCCTCACAGACATGAGGGTATTTT CATTGCTAAGGGTGGTAAAGAAGATGCTCTTGTTACTAAGAATCTGGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGG TTACTGTTCAGGTAATTTCATTCTCATTGACACTGTATAGTTTGATGATTTGACATTGGATTTGCTTAAAACATGCATGA AAATAGTATTTTAGGTTTTGTTAGTTTTCTCAGTTAGCTTTTGGTTAGCTTCATATACTGGATTATGCATTAATGTATTA TGTTCAAAGCTTTCATAGGTATTTTTCTGTTTATGTTGATTTCAATGTCAGCTAATTCCATGAAACCTAGGCATATTTTC TTCACTTAGCTTAATTGTTTTTCATAGGATTTATTTATATTCCCCAATGATCTTGTGACACATGAATAATTTACATTCTG CAGAAAGAGGATGGTACAAAAGAGGAATATAGAGTTTGGAATCCTTTCCGCTCCAAGTTGGCTGCTGCCATCCTTGGTGG GGTTGACAACATATGGATTGTAAGTAGTTTCTGCGCCTTATAACCTGTGTTGTACCTTAGCATTGTGCTCTAGATAGCAG TATATTGACATCTTTTTTTGTTTATTGCATTGTTCTACTATAGAAACCTGGAGCCAAAGTCCTTTACCTAGGAGCTGCTT CTGGAACAACTGTTTCTCATGTGTCTGACATTGTTGGTCCAGTAAGTACCAAATCAATGTTGGATAATCATTACACTTAG TGTTAATAGCTGATCTTAATATGCTTTTTTTTTTCTATATAGACCGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAG TGGGCGTGATTTGGTCAATATGGCAAAGAAGCGTACCAATGTTATACCTATTATTGAGGACGCTAGACATCCAGCTAAGT ACAGGATGTTGGTTGGGATGGTAGATGTGGTATTTTCTGATGTTGCTCAACCTGATCAGGTTTGGTCTTAGTTTCTTATT GATATATTTTAAAAGAAGTCACTATACATGATACCTGTTGAGGATGGTGTCTGCCTCCTTTGTCTTTAAAGCCTGTAGTG TTCCTTTGTATATATTTACACCAATTTTAATCTCTATAGTTCATTTGATTTCAAACATTCCTTCTGTTTTTTGGGCTCTC AAATATAAAGTCATCTAACTGTGAGAGTTATGCTATATCTTCTGTGTAGTATGACTTCTGAATATGTATTTAAAGGTTGT TATTTTATATGTACGTAATTATATGCAGTATATTATCTAACTTGTTGTAATTTAGCAATAACAATTTGCTATCCTGCTTT AGCAATCTATGCCACTATCCTTGATTGACAACTTTGTTTCTACTCACATTTGGTTCCTACTTGTCCTTTTGGCATGTCTA TATATCTTTTAAACTTCCCTTTTCCCTTTTCTTTTATCTACTTTTTCTCACAAATTTCTTTTTTTCATGCCTGCCATTCT CTTAAACTACTTACTACTTTTGTTTAATTGAATTTGTTTTTTTTCATTCTTGTCTGTGTCTCTATCTGTGCATATGATGA GTTTACTCGGATTCCCCTTCAAGACTTCCTGGCTGATGTGAAACCGAGATTCTGATGCACATCAGTTTCTGTTGTTATTT GTTCTGTTTTGTTTTGTCATGCTTTAGCTTAAAATTGATGAAATTGCTGGTGCAAGAATGAGTTCTCTATGGGATTTTAA TTTTTTATTTTTACCTTTGCTAGTAATGAACTTAAATAAGAGTTTCTGGTTACTCTATAATGTAAGTTCTATTTATGCTA TTTTCATGACCATTGCAGGCAAGAATTCTAGGACTGAATGCTTCATATTTTCTCAAAACAGGAGGTCATTTTGTCATTTC AATCAAGGTTTGTTCTGAAATCAAATCTTGCTTTCACTTGCACAGTTGTGATTTGTATCACACTAAGTAGTTGCACATCT AACACTGCAAACAGGTCAATTTTTGTTATCTGGGTTATTGAAGTGTAATGGCTCTTAAGTTCTAATTTGCTCTTTGATTT TCCCAATCATACTCACTTAACTTAATTTGCTCCTCAGGCAAACTGCATAGATTCCACTGTCCCTGCTGAGACAGTCTTTG TTAATGAAGTGAACAAGCTGAAGGCAGATCAGTTTAAGCCTGCTGAGCAAGTCACCCTTGAACCCTTTGAGCGTGACCAT GCCTGTGTTGTTGGTGGATACAGATTGTCAAAGAAGAAGAAAGATGCTGAATAG
CDS sequence (LotjaGi1g1v0018400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGAGGGAGCAGAGTTGTTGTTGAGCCTCACAGACATGAGGGTATTTTCATTGCTAAGGGTGGTAAAGAAGATGC TCTTGTTACTAAGAATCTGGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGGTTACTGTTCAGAAAGAGGATGGTACAA AAGAGGAATATAGAGTTTGGAATCCTTTCCGCTCCAAGTTGGCTGCTGCCATCCTTGGTGGGGTTGACAACATATGGATT AAACCTGGAGCCAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACTGTTTCTCATGTGTCTGACATTGTTGGTCCAAC CGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAGTGGGCGTGATTTGGTCAATATGGCAAAGAAGCGTACCAATGTTA TACCTATTATTGAGGACGCTAGACATCCAGCTAAGTACAGGATGTTGGTTGGGATGGTAGATGTGGTATTTTCTGATGTT GCTCAACCTGATCAGGCAAGAATTCTAGGACTGAATGCTTCATATTTTCTCAAAACAGGAGGTCATTTTGTCATTTCAAT CAAGGCAAACTGCATAGATTCCACTGTCCCTGCTGAGACAGTCTTTGTTAATGAAGTGAACAAGCTGAAGGCAGATCAGT TTAAGCCTGCTGAGCAAGTCACCCTTGAACCCTTTGAGCGTGACCATGCCTGTGTTGTTGGTGGATACAGATTGTCAAAG AAGAAGAAAGATGCTGAATAG
Protein sequence (LotjaGi1g1v0018400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFRSKLAAAILGGVDNIWI KPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDV AQPDQARILGLNASYFLKTGGHFVISIKANCIDSTVPAETVFVNEVNKLKADQFKPAEQVTLEPFERDHACVVGGYRLSK KKKDAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 5.0E-141 | – | |
| PANTHER | 1 | 243 | 243 | 5.0E-141 | – | |
| PIRSF | 1 | 240 | 240 | 2.5E-117 | ||
| Gene3D | 4 | 60 | 57 | 8.6E-27 | – | |
| SMART | 9 | 238 | 230 | 8.0E-173 | ||
| SUPERFAMILY | 9 | 237 | 229 | 2.58E-52 | ||
| Pfam | 9 | 237 | 229 | 1.4E-109 | ||
| Hamap | 24 | 237 | 214 | 37.082 | ||
| PRINTS | 28 | 47 | 20 | 8.7E-90 | ||
| PRINTS | 56 | 75 | 20 | 8.7E-90 | ||
| Gene3D | 61 | 238 | 178 | 9.6E-90 | – | |
| PRINTS | 83 | 104 | 22 | 8.7E-90 | ||
| PRINTS | 108 | 125 | 18 | 8.7E-90 | ||
| ProSitePatterns | 108 | 122 | 15 | - | ||
| PRINTS | 133 | 162 | 30 | 8.7E-90 | ||
| PRINTS | 163 | 192 | 30 | 8.7E-90 | ||
| PRINTS | 215 | 236 | 22 | 8.7E-90 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0018400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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