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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0122000 |
| Transcript ID | LotjaGi2g1v0122000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:44977735..44982855) extracted from Lotus japonicus Gifu genome v1.2.
ATAACACAAAACCCTAATGTTAAACCCTAACTTTGAGCTATAAAACCCTCGTTTCTGAACCCTACTATGTGACGTTGCCT TGTCTGTAATTCTGCAATTTCGTTCGAATCATCTCTTTGCAAGCTCAGAACAATGGTTCCTCCTCCTCGAGGTATCAGAA TTAACCTGAAAAATTGTCTGATTTTCCTCCATTCCCCCTACCCTTTTTATTTCATCATAATGGTTACTGAAATATTTCTT CTAATTTGTAAACCCTGATATGCTCAAAGGAATGATTTTTACTAGCTTTGTAGTGCTTGGAATTTTTTTTGCTCTTATTG GTAGAAGAATGTAGTGTGACCTAGCGCCCTTTTTTTTAATAATGGTGTTTGAATTTTTGTAGGTCGCGGTGGCAGTGGTT GGTTCAGAGGTAGAGGGAGAGGTGATGGAGGAAGAGGAGGAGGTAGAGGTACCCCTTTTAAGGCACGAGGTGGTGGTAGA GGAGGAGGCAGGGGAGGCCGCGGAGGAGGTAGAGGTGGCAGAGGTGGAGGAATGAAAGGAGGGAGCAGGGTTGTGGTTGA GCCTCACAGGCATGAGGGTATTTTCATTGCCAAGGGTGGTAAAGAAGATGCCCTTGTTACTAAGAATCTGGTTCCGGGTG AAGCTGTTTACAATGAGAAAAGGGTTACTGTGCAGGTTATTTCTTTCTCATTTATTCCGTGTATAATGAGATAATTTAAC ATCATATTTACTTTAACATGCATGTAAATAGCATTTCATTAGGAGGGTTTTGTTGATTCCTCAGTAGGTTTTTGGTTACC TTTATGTTTGTGAAGCTTCTTCTTTGGTGGGGTTTGGTACCTCCTCATTTGAGTTGTATACTATATGTTGGGCTATGCCT TAATGTTTTCTCCTTTGTTTAAATATGTTTGTTTGCTAATTGCCTGGATTTTCAATTCTTCACACTTGGTTATTATGACA ATAATGTCACTCCCAAGGTGTCTTAAGGGTTTTTCTGTTTATTCTTTGGTTTGTGAAATTAAATATATCCATTTATTTTG ATGGTAATGTCAGGTAAATTCTCTGGGAAGCTGGGATTTTTTTTTTCAGAATTGATTCCTTAAATTTTAGTTTTTTTACA TAGTATGTATTGTATTCTATATTTATCTGTTAACACCTGTAGTTACATTCTGCAGAAAGAGGACGGTACAAAAGAGGAGT ATAGGGTTTGGAACCCTTTTCGCTCCAAGTTGGCTGCTGCCATTCTTGGTGGGGTTGACAACATATGGATTGTAAGAAGC TTCTCTGCCTTATAACATGTCCTGTACTTGCATTGTGCTACAATTATCAGTCTTTTGACTTTTTTTTTGTTTGTTACTTT GATTTAATAAAGAAACCTGGAGCCAAAGTTCTTTACCTAGGAGCTGCTTCTGGAACAACTGTTTCTCATGTGTCTGACAT TGTTGGTCCAGTAAGTACTAATTCAGAGATGCATAATCTTTACATATTTGTTAATAGCTGATCTGAACATGTTCTTTCTA TATAGACAGGAGTTGTCTATGCAGTAGAATTTTCTCATAGAAGCGGGCGTGACTTGGTCAATATGGCAAAAAAGCGTACT AATGTTATACCCATTATTGAAGATGCTAGACATCCAGCCAAGTACAGGATGTTGGTTGGAATGGTAGATGTGGTATTTTC TGATGTTGCTCAGCCTGATCAGGTGTGGTAATTTCTGACTGATATACCTTAAAAGAACTAACTCTACATGATACCTCTCA AGGATGGTACCTGCCTCATGTCCCTAAAGCCCATATGGGATATTTTTCTGTAATGGAATTGTATACTAATTTTAATTTGC ACTGGTATTGTTCACTTGATCATCATGCACTCCTTCTGTTTTTTTGGCATTCAATATCCGGCCAGCTATCTGTTATGCTA TAGCTTGTGTATAGTGTATCTTCTTATTATCAACCATGAATATGTAATTATGTAATTTTGTACCGAGGCAGTTATATGTA GTGTCATATATTTTTTAACATATCTTACAATCCATAGAAGCTGCCACCCCCCACTTGCTATCCTGCTATTGCAATATTGG GGTTGGTCTTTCTATGCCACTATCAGATTATTCTATTTTCTTTTCCCTTCCTGGACTCTTGCATTTGTCTATCAATCAAT CTTCTAAACTTTGCTGCTCTTTACCCACTTGTCTTCCAAAATCTTTATTTTTCAACTGTCTTTTACTTAATACACACATG CACACACACACACACACTACTGTGTCACTGAATTTGTATTTTTCAATCCTTTTTTTATCTATATACGACATCCATGTGGG ATATTGTGCATATGAAGAGTTACTCGGGTTCCCCTTCAAGACATCATGGATGATGGTGACCCGAGTTTCCGATGCCTGTT AATTTCTTTTGTTTTTTCCTGTATTATTTTGTTGTGCTGACTTAAAGTTGATGAAATAATGAGTTGCCTGATTAATTTTC TAAATTTTACTCATTATCTACTTTGTCTCTATTTGTATTTTCAAATATTTCTTGTCTGATATCTGTGCATATGATGAGTT ACTCGGATTCCCCTTCAAGACATCTTGGATGATGCTAACCCGAGTTTCTGATGCACGTTAATTGCTTTTGTTTTTTCCTG TATTATTTTGTTGTGCTTACTTAAAATTGATGAAATTATGAGTTTCCTTGTCAGTTGTCCAAATTCTACTCCTCTTTATC TACTTTGTCTCAGTTTGTATTTTCAGTCCTGTCATCTATAAACTACTCTGTTTCACACATTTCTTTTCAATCATGTTCTC TTATTTCTCTGTATACACAGTTCATGTGTGTTATCTGTGCATATGATGAGTTACTCGGATTCCCCTTCAAGACATCATGA ATGATGCCAACCCGAGTTTCTGATGCGCATCAATTTCTTTTTTTCTCCTGCATTGTTTTGTCATGTTATTTTTCAATGGA TGGAAGTGTTGGTGCAAAATAATGATTTGCCTGATCAGTTGTTTTAATTTATTTTTTCAGTAAATATTGTGTTTCAGTAA ATTCCTACTTTTTTACCCTATGCACTGTTCTATTTGTGTCCTTTTAAGTTTTTGTTTTTAATATCTTTTCTTTAATGGGA AAAGACTTTTGTTATTGTTGGTTGGTTGTGTTTTTTAGTGTTTTATCTTTGCTTGAAGGGAAACTCTAAAAAGTGTTTTT TTCACTGTCGAGTGTCAACTAACATTTTAAAACTTCGGGTAGTCTAAAACTTAGATTTTTAATGCTATTTTTGTGACCAT TGCAGGCAAGAATTTTAGGGCTGAATGCTTCATATTTTCTCAAAACTGGAGGCCATTTTGTCATTTCAATCAAGGTTTGT TATGACATCCATCTCACTTTCACTTGCATCTTGGGACTTCTATCACACTAAGAAGTTGCGAGTATTATGAATTTTTATAT GAAACTTGTACTCAGTAATTTTAATTAAGAACATTGCAAAAAGGTCAATTTTGTTATCAGTGTAAATGTATCTTTTGGTT CTTGTATGTTAAGGTCGTGCCTTGAATCTATTTATCTGCTGTTCATTTGCTAAATCCACTCAACTTGTTTGTATCTTAGG CAAACTGCATAGATTCAACAGTGCCTGCGGAGACTGTTTTTGTTAATGAAGTCAACAAGCTGAAGGTAGATCAATTTAAG CCTGCTGAGCAAGTCACCCTTGAACCGTTTGAGCGGGACCATGCTTGTGTGGTTGGTGGGTACAGAGTGTCCAAGAAGAA GAAAGATGCTGAGTAGATTGCTTTAGAGAAGGCATGCATTCGTGTATTTCAAGCTATATACCATGCTGTGATGTTTTTTT CAGTACCAGAGATTTCATCGTGATAATTTTTTGTCTTCAAAATGCTGGGATTATCGAACTTACTCCAATTTTCTGTAGAG GATTGTTAATGTCTTGGATCTTTAACATCTTATATTTAAATTGTAATTGGTATTTTAATGGTAGTGCTTGGTGTATTGCA GTATTTTCACAAAATCATATTCCTAGGCATAGGGGTGCGAATCCACTAAGGCTAGCCTAGTGGTAAGCTTCACTACTTGG AGAGTCCACGGAGGAAACTCAAATCTGTGCCAATAACTTTTTTTTTAGAACATTGCTCACAACTCTTGTTGGAGTCACTG CTTGATTTCTTAGTGAGATAGCCCTTTGTTTTCGTTGTGTATTATAGCCATCTCATCTTTTGATTCTAAGGTAAATTTCG TCACTAGATGGAGATCGAAGCCTCGGGTTTGTAAATTGTCATGTATTTAATTTGTAGAGGCTTGATTCTTACAAATATGT CTTTTAATTGTATGGGATAAAGCTCGATTTTGTCGTTGGAAGCATGAGATCAAGATCTTGGGTCCACACATCTGTCATGG GTTTGATTGGTTGAGGCTTGTTTTTTGGAGTTTCGTCATCTGCATAGGCTTGGGTGCATCTGGAAGTGAGTTTTTTTATG TGTATCTTTTTTTGATTTGTTGATTGATGGAGTTTCTGAGTTGGCTGGGTTTGGATGGTTGGGCTTTTTGTGTACATTTA CCCCCTCTCTGGGTTGGTGTTGTGATCTTTTGAGATTCTGGGTTTCTTGAATTTTGCTTGTCTTGAAGAAGCTATGGAGG AGTTTTTTTTATTCTACATTTTTTTGTCTTGGTAGAAGGGAAGAAGGATGAGGAGAAAGTGAAGGGGGTGGCTAGTTCAT AATCTACTATTAGCTTGTCGCTTCGACTATCCAAAGTTGCCGTTGTAATTTTTAGGTGCCAACAAGTATTTTCCATAATC TTAAAACTGATGATTCGATATCCTCATACCCTTTATCCGGAAAAAAATTGGCAATATGCATCGTAGGTCCCAACAGATAG TAATCATATGCTATTTTATCCACCATTATCTTAATTTCTGGCTCTCTGCCCTTCCGTGCTAGATATTTTCAAGTGCCCCC AATGCATTTCACGTTTCCACATTAATTAAGACGAAATACAAGTTAATTACCAGTTCTGTTGGAACAATTCTGGTTGACAC CTGGGACCAAAAGCTGAATAAACCAAAGAAAAGAAAGAAAGATAATGATTTATCATGTCCTGGAATAATGATTCATAGAC A
CDS sequence (LotjaGi2g1v0122000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCCTCCTCCTCGAGGTCGCGGTGGCAGTGGTTGGTTCAGAGGTAGAGGGAGAGGTGATGGAGGAAGAGGAGGAGG TAGAGGTACCCCTTTTAAGGCACGAGGTGGTGGTAGAGGAGGAGGCAGGGGAGGCCGCGGAGGAGGTAGAGGTGGCAGAG GTGGAGGAATGAAAGGAGGGAGCAGGGTTGTGGTTGAGCCTCACAGGCATGAGGGTATTTTCATTGCCAAGGGTGGTAAA GAAGATGCCCTTGTTACTAAGAATCTGGTTCCGGGTGAAGCTGTTTACAATGAGAAAAGGGTTACTGTGCAGAAAGAGGA CGGTACAAAAGAGGAGTATAGGGTTTGGAACCCTTTTCGCTCCAAGTTGGCTGCTGCCATTCTTGGTGGGGTTGACAACA TATGGATTAAACCTGGAGCCAAAGTTCTTTACCTAGGAGCTGCTTCTGGAACAACTGTTTCTCATGTGTCTGACATTGTT GGTCCAACAGGAGTTGTCTATGCAGTAGAATTTTCTCATAGAAGCGGGCGTGACTTGGTCAATATGGCAAAAAAGCGTAC TAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCCAAGTACAGGATGTTGGTTGGAATGGTAGATGTGGTATTTT CTGATGTTGCTCAGCCTGATCAGGCAAGAATTTTAGGGCTGAATGCTTCATATTTTCTCAAAACTGGAGGCCATTTTGTC ATTTCAATCAAGGCAAACTGCATAGATTCAACAGTGCCTGCGGAGACTGTTTTTGTTAATGAAGTCAACAAGCTGAAGGT AGATCAATTTAAGCCTGCTGAGCAAGTCACCCTTGAACCGTTTGAGCGGGACCATGCTTGTGTGGTTGGTGGGTACAGAG TGTCCAAGAAGAAGAAAGATGCTGAGTAG
Protein sequence (LotjaGi2g1v0122000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPPPRGRGGSGWFRGRGRGDGGRGGGRGTPFKARGGGRGGGRGGRGGGRGGRGGGMKGGSRVVVEPHRHEGIFIAKGGK EDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIV GPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTGGHFV ISIKANCIDSTVPAETVFVNEVNKLKVDQFKPAEQVTLEPFERDHACVVGGYRVSKKKKDAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 62 | 62 | - | – | |
| PANTHER | 12 | 299 | 288 | 1.9E-149 | – | |
| PANTHER | 12 | 299 | 288 | 1.9E-149 | – | |
| PIRSF | 32 | 296 | 265 | 1.8E-119 | ||
| Gene3D | 60 | 116 | 57 | 1.2E-26 | – | |
| SUPERFAMILY | 65 | 293 | 229 | 5.63E-52 | ||
| SMART | 65 | 294 | 230 | 1.6E-171 | ||
| Pfam | 65 | 293 | 229 | 5.7E-109 | ||
| Hamap | 80 | 293 | 214 | 36.98 | ||
| PRINTS | 84 | 103 | 20 | 2.0E-89 | ||
| PRINTS | 112 | 131 | 20 | 2.0E-89 | ||
| Gene3D | 117 | 294 | 178 | 3.7E-89 | – | |
| PRINTS | 139 | 160 | 22 | 2.0E-89 | ||
| ProSitePatterns | 164 | 178 | 15 | - | ||
| PRINTS | 164 | 181 | 18 | 2.0E-89 | ||
| PRINTS | 189 | 218 | 30 | 2.0E-89 | ||
| PRINTS | 219 | 248 | 30 | 2.0E-89 | ||
| PRINTS | 271 | 292 | 22 | 2.0E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi2g1v0122000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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