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Lj5g3v2113470.2

Overview

Field Value
Gene ID Lj5g3v2113470
Transcript ID Lj5g3v2113470.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi|356536156|ref|XP_003536605.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10996
47 413 367 0 –
PANTHER
PTHR10996:SF159
47 413 367 0 –
Gene3D
G3DSA:3.40.50.720
56 161 106 5.30E-36
IPR016040
SUPERFAMILY
SSF52283
57 190 134 6.43E-34 –
CDD
cd12173
60 362 303 9.35E-159 –
TIGRFAM
TIGR01327
60 597 538 3.50E-169
IPR006236
Pfam
PF00389
60 369 310 8.70E-35
IPR006139
SUPERFAMILY
SSF51735
156 338 183 1.45E-57
IPR016040
Gene3D
G3DSA:3.40.50.720
162 339 178 4.70E-75
IPR016040
Pfam
PF02826
162 337 176 6.10E-62
IPR006140
SMART
SM00997
187 341 155 0.0048
IPR015878
ProSitePatterns
PS00065
199 226 28 –
IPR029752
ProSitePatterns
PS00670
247 269 23 –
IPR029753
ProSitePatterns
PS00671
276 292 17 –
IPR029753
Gene3D
G3DSA:3.30.1330.90
375 519 145 7.50E-21
IPR029009
SUPERFAMILY
SSF143548
375 521 147 1.12E-23
IPR029009
SUPERFAMILY
SSF55021
518 596 79 8.25E-14 –
Gene3D
G3DSA:3.30.70.260
520 594 75 3.50E-17 –
ProSiteProfiles
PS51671
527 599 73 9.476
IPR002912
Pfam
PF01842
527 589 63 2.70E-09
IPR002912
CDD
cd04902
528 599 72 9.30E-22 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004617
Molecular function Phosphoglycerate dehydrogenase activity Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
Subterm of
GO:0006564
Biological process L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj5g3v2113470.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2113470.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.