Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0179400 |
| Transcript ID | LotjaGi3g1v0179400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25001306..25004302) extracted from Lotus japonicus Gifu genome v1.2.
TCATTGGTGCGAATGCCCAGTATAAAACCTAAACCGAAGGCGTTGCCCTCCGTTTGTGCTCTTCCACAATCTTGTATTGT ATATTTCTTTCGTTTTTGTTCCTCATTTTCTTTTAACAGAAAAAAATTATTGCATATCAATCATCTTAGGTACAGAGGAA GTTACAGGATGAAGGACACGTAAGCCTTCGTTGTTACCACTTCCCATCCCGCACACGCATTGCATAACCATTTCTCTCTC TCTCTCTCTCTTCCTCCCTATCTCAACAACATAGATCTGTCCCCTCCATTTCAAGTAAGCACCCCTCTCTGTTTTCATCT CAGATTCAAACTATGCTTGTTATCATGTTATGGTTGATTTGTTTTTTTTTTTTTTCCTTCTTCTTAATTGATTGCAATTT GTCTTGTTAACCTCTGTTTGGAATTTGGTATTCAAAACACCAGCTCTGTTCAATCTTATTGTATCTGGTGGTATTATGAG TATATTATTGTAGTAAAGATTTGATGTTTTGTTTTCTTTTGTGTTTTTCAACTCCACTAGTGTTTTGATCAGGTTGCAGT GACAAATCCAACTCTGTATTGGTAGTTTTTATTATTTAATCTCTGTTTGTAGATAAGAAATATGAATGGTTTTTTGTTTG AAACTCAAAGTCCCTGTTCACTTTGAACTCTGCAAACATATGAATGTGAGCATCCCTGTACACATACAAAATAAGTCAAA AGAAAAACTTGTTAAGAGTATTTCAGGCTTCTAGCTAATAGTTGATTACTGGTCTTGACTCTTGAGGTTCTCACCTTGTA TATAAGATATCAATCATATATACAATTTATAAACGGGTTGTTTAGTTTTCCAGTCAATGCTGTGGATTAGATACTTTGAG GGACACAGAAGAAGGGGAGGGGGGATTATATGTTCTGATGGATAGTATTGCGACGTTTTTGGATCTGACTAAGTTATATC TTCTATTTAATTGATATTACTTACAACTAAAGTATTCATTCTTTTTATACCAAAATAAAGACAGCTGCTCTTTGATCTGT AATCTGAATCCTAACTTATTTCTTGTAATGGAAATTTATAGCAAGCCTCTCTGTTGTCTTTTGTTTGACATGCTTGTATT TTTTCTTTACTTTTCCTGATCTTTTTGTTTTGGAAGGATTCCTATCTCTCCGGCAGTGTATTCCATCCTATATAGTACAG GTTGTTTGCATGCTTAGACTTTAAAGTTCATTTTATTAACATATGGAGCTTTGCAGGTGTACAAACTATACATACAGTTA ATACTCAACATGGAGCTTAGTACTATTAAAGATGCTTTTGACCGTGTTACTAAGAAGCAAAAGTCATCTAGCTCCAAGAC TCAAGAAGTGATTGATCAGATCAGACAGGAAATTGAGAATGTTTTAGATACGATGCAGTCAGTCAATAACACCGACCATG TGCTTGATCATAAAACTGTCCTGAATGAGCTCAAGGCTAGTTTACTTCAAACCGCTCCACTTAGCCAAATGGAAGGTACA CAGAAGGAGCTAAATGTAGCACTCAGCAAGTATGGGAAGCTTCTTGAGAAAAATTTCAACACTGATATATCCAAGGCTTA CAGAAATATTGACATTGATGTACATACTTTGAACCAAATAATTGCCAACCATTTTTATCGGCAGGGCCTTTTTGAAATAG GGGACCATTTTCTAAGTGTGGTTGGAGAGCCCGAATCTGCTGCTGTTATGAAATCCCCATTCCTGGAAATGTATCAAATA CTCGAAGCCATGAAGAATCAGGACCTGGAGCCAGCCCTCAAGTGGGCTACCAGTAATTCTGACAAACTTGCTCAAAGTGG ATCTGACATTGTGCTGAAGCTTCACTCAATGCAATTTGTAAAAATACTTCAAAATGGAAGTAGAGACGAAGCCCTTCATT ATGCTAGAACTTACCTTTCTCCTTTTGCTTCCAGTCACATCGCTGATATCCAGAAGCTTATGGGAAGTCTTCTGTGGACT GGAAAGCTTGATAGCTCTCCTTACCATGCATTATTATCCCCATCAAACTGGGATAGGTTGGCTGAGGAACTTAAAAGGCA ATTCTGCAATCTTTTGGGACAGTCATACAACAGTCCATTGAGTGTGACTATATCAGCAGGGGTCCAAGCTTTGCCACCTC TTCTCAAATTTATGAATGTCATGGTAGGGAAGAAGCAGGAATGGCAGACTATGAACCAGTTACCGGTGCCTGTTGAGCTG GACAGCGAACTCCAGTTCCATTCCATTTTTGTTTGTCCTGTCTCAAAGGAACAAGCTACTGAGGATAACCCTCCTATGTT AATGTCCTGTGGCCATGTCCTCTGTAAACAGTCTATCTCGAAGATGTCCAAGAACGGCTCGAAATTATTCAAGTGCCCAT ATTGTCCCTTTGATGTTGATGCAGCACTTTGCAAGCAACTATATTTCTGATGTTTATGGGTTTGTATGAAACACTCTGTA AACTGAATCTTCTGTTAGCATAGGTGTACCTGTGTATGGTGGTTGCTAAAGCCCATGCCTAGTTGTGATGTCTGTATGTT TTATAAATTTGTAAATAGATATTCTTCTTAATGTTGATATGGCCCGCAAGTTCTTCATTGATTACCAGCATTCATTTGAA TAAGATTTGATCCACCTAAATTGGATTTTCCATTTTCCTTTGGGTCAATGGTTGAACCATAACGATTCTTGCTGGTCTTA TTTACACGTTTCAATTTTACCAACACCTTCTCGACTTTGGATCCATCAATGCCCTGCACCCACCTCATTTGAATAAGTAC TGACTCTTTAGATTGAGCAAAATTATAGCTTCCTTTTATAGCCACCAGGTACCACCCACACCCACCACCACCAACTCCAT CGTCGCCACCGTCGCCACCACCGCCAGTACTCTTCACCACCGCCGCTACCACCTCCACTAGCACCACCACCACCCCTCCT CCAGGTAACAACCACTTCCACTGGTGTCACCTCCACT
CDS sequence (LotjaGi3g1v0179400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTAGTACTATTAAAGATGCTTTTGACCGTGTTACTAAGAAGCAAAAGTCATCTAGCTCCAAGACTCAAGAAGT GATTGATCAGATCAGACAGGAAATTGAGAATGTTTTAGATACGATGCAGTCAGTCAATAACACCGACCATGTGCTTGATC ATAAAACTGTCCTGAATGAGCTCAAGGCTAGTTTACTTCAAACCGCTCCACTTAGCCAAATGGAAGGTACACAGAAGGAG CTAAATGTAGCACTCAGCAAGTATGGGAAGCTTCTTGAGAAAAATTTCAACACTGATATATCCAAGGCTTACAGAAATAT TGACATTGATGTACATACTTTGAACCAAATAATTGCCAACCATTTTTATCGGCAGGGCCTTTTTGAAATAGGGGACCATT TTCTAAGTGTGGTTGGAGAGCCCGAATCTGCTGCTGTTATGAAATCCCCATTCCTGGAAATGTATCAAATACTCGAAGCC ATGAAGAATCAGGACCTGGAGCCAGCCCTCAAGTGGGCTACCAGTAATTCTGACAAACTTGCTCAAAGTGGATCTGACAT TGTGCTGAAGCTTCACTCAATGCAATTTGTAAAAATACTTCAAAATGGAAGTAGAGACGAAGCCCTTCATTATGCTAGAA CTTACCTTTCTCCTTTTGCTTCCAGTCACATCGCTGATATCCAGAAGCTTATGGGAAGTCTTCTGTGGACTGGAAAGCTT GATAGCTCTCCTTACCATGCATTATTATCCCCATCAAACTGGGATAGGTTGGCTGAGGAACTTAAAAGGCAATTCTGCAA TCTTTTGGGACAGTCATACAACAGTCCATTGAGTGTGACTATATCAGCAGGGGTCCAAGCTTTGCCACCTCTTCTCAAAT TTATGAATGTCATGGTAGGGAAGAAGCAGGAATGGCAGACTATGAACCAGTTACCGGTGCCTGTTGAGCTGGACAGCGAA CTCCAGTTCCATTCCATTTTTGTTTGTCCTGTCTCAAAGGAACAAGCTACTGAGGATAACCCTCCTATGTTAATGTCCTG TGGCCATGTCCTCTGTAAACAGTCTATCTCGAAGATGTCCAAGAACGGCTCGAAATTATTCAAGTGCCCATATTGTCCCT TTGATGTTGATGCAGCACTTTGCAAGCAACTATATTTCTGA
Protein sequence (LotjaGi3g1v0179400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSTIKDAFDRVTKKQKSSSSKTQEVIDQIRQEIENVLDTMQSVNNTDHVLDHKTVLNELKASLLQTAPLSQMEGTQKE LNVALSKYGKLLEKNFNTDISKAYRNIDIDVHTLNQIIANHFYRQGLFEIGDHFLSVVGEPESAAVMKSPFLEMYQILEA MKNQDLEPALKWATSNSDKLAQSGSDIVLKLHSMQFVKILQNGSRDEALHYARTYLSPFASSHIADIQKLMGSLLWTGKL DSSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQALPPLLKFMNVMVGKKQEWQTMNQLPVPVELDSE LQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSISKMSKNGSKLFKCPYCPFDVDAALCKQLYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 386 | 386 | 7.9E-175 | – | |
| PANTHER | 1 | 386 | 386 | 7.9E-175 | – | |
| Coils | 28 | 48 | 21 | - | – | |
| ProSiteProfiles | 150 | 207 | 58 | 10.937 | ||
| SMART | 150 | 207 | 58 | 1.5E-7 | ||
| Pfam | 151 | 290 | 140 | 8.9E-33 | ||
| SMART | 203 | 297 | 95 | 2.2E-24 | ||
| Gene3D | 318 | 385 | 68 | 1.5E-8 | ||
| SUPERFAMILY | 323 | 377 | 55 | 2.26E-9 | – | |
| CDD | 327 | 373 | 47 | 6.33349E-29 | ||
| SMART | 329 | 372 | 44 | 7.6E-4 | ||
| ProSiteProfiles | 329 | 372 | 44 | 13.12 | – | |
| Pfam | 329 | 370 | 42 | 8.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0179400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…