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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0077959 |
| Transcript ID | Lj0g3v0077959.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Carbamoyl-phosphate synthase large chain [Medicago truncatula] gi|357453751|ref|XP_003597156.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1035 | 1035 | 0 | – | |
| TIGRFAM | 1 | 1014 | 1014 | 0 | ||
| PANTHER | 1 | 1035 | 1035 | 0 | – | |
| SUPERFAMILY | 1 | 73 | 73 | 1.40E-19 | ||
| Gene3D | 1 | 53 | 53 | 1.30E-14 | ||
| Pfam | 74 | 281 | 208 | 3.00E-72 | ||
| SUPERFAMILY | 74 | 347 | 274 | 7.07E-107 | – | |
| ProSiteProfiles | 79 | 275 | 197 | 42.636 | ||
| Gene3D | 87 | 147 | 61 | 3.20E-23 | ||
| ProSitePatterns | 111 | 125 | 15 | – | ||
| PRINTS | 115 | 127 | 13 | 1.50E-52 | ||
| Gene3D | 148 | 346 | 199 | 7.90E-78 | ||
| PRINTS | 151 | 170 | 20 | 1.50E-52 | ||
| PRINTS | 186 | 203 | 18 | 1.50E-52 | ||
| PRINTS | 244 | 273 | 30 | 1.50E-52 | ||
| ProSitePatterns | 244 | 251 | 8 | – | ||
| PRINTS | 326 | 344 | 19 | 1.50E-52 | ||
| SUPERFAMILY | 342 | 500 | 159 | 4.32E-51 | ||
| Gene3D | 347 | 484 | 138 | 1.70E-48 | ||
| SMART | 370 | 493 | 124 | 4.80E-67 | ||
| Pfam | 373 | 493 | 121 | 1.80E-40 | ||
| Gene3D | 485 | 601 | 117 | 2.60E-57 | ||
| SUPERFAMILY | 502 | 634 | 133 | 1.58E-46 | ||
| SUPERFAMILY | 632 | 894 | 263 | 5.83E-98 | – | |
| Pfam | 632 | 835 | 204 | 4.00E-36 | ||
| ProSiteProfiles | 637 | 830 | 194 | 41.127 | ||
| Gene3D | 646 | 704 | 59 | 1.60E-25 | ||
| ProSitePatterns | 668 | 682 | 15 | – | ||
| Gene3D | 705 | 895 | 191 | 4.10E-68 | ||
| ProSitePatterns | 799 | 806 | 8 | – | ||
| SUPERFAMILY | 896 | 1031 | 136 | 4.45E-31 | ||
| Gene3D | 898 | 1031 | 134 | 1.50E-30 | ||
| CDD | 903 | 1013 | 111 | 7.12E-38 | ||
| SMART | 916 | 1003 | 88 | 1.90E-26 | ||
| Pfam | 917 | 1003 | 87 | 1.10E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Nitrogen compound metabolic process | The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0077959.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0077959.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.