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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1603870 |
| Transcript ID | Lj3g3v1603870.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356496154|ref|XP_003516935.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 72 | 72 | – | – | |
| Coils | 40 | 60 | 21 | – | – | |
| PIRSF | 76 | 684 | 609 | 2.40E-238 | ||
| PANTHER | 78 | 666 | 589 | 0 | – | |
| PANTHER | 78 | 666 | 589 | 0 | – | |
| Gene3D | 87 | 281 | 195 | 4.20E-47 | ||
| SUPERFAMILY | 89 | 278 | 190 | 5.31E-46 | ||
| SMART | 103 | 263 | 161 | 0.0034 | ||
| Pfam | 142 | 261 | 120 | 1.30E-15 | ||
| ProSiteProfiles | 186 | 255 | 70 | 13.456 | ||
| ProSitePatterns | 208 | 218 | 11 | – | ||
| MobiDBLite | 288 | 311 | 24 | – | – | |
| SUPERFAMILY | 316 | 554 | 239 | 2.48E-42 | – | |
| CDD | 326 | 554 | 229 | 4.33E-89 | – | |
| Gene3D | 344 | 486 | 143 | 3.40E-31 | – | |
| Pfam | 355 | 553 | 199 | 1.10E-75 | ||
| ProSiteProfiles | 437 | 581 | 145 | 8.9 | ||
| SUPERFAMILY | 556 | 668 | 113 | 8.48E-23 | ||
| Pfam | 573 | 651 | 79 | 2.10E-18 | ||
| Gene3D | 600 | 671 | 72 | 9.90E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA ligase (ATP) activity | Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m). | ||
| Molecular function | MRNA guanylyltransferase activity | Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue. | ||
| Molecular function | Polynucleotide 5'-phosphatase activity | Catalysis of the reaction: 5'-phosphopolynucleotide + H2O = polynucleotide + phosphate. | ||
| Molecular function | Protein tyrosine phosphatase activity | Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. | ||
| Biological process | 7-methylguanosine mRNA capping | Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Protein tyrosine/serine/threonine phosphatase activity | Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. | ||
| Biological process | Dephosphorylation | The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. | ||
| Molecular function | Phosphatase activity | Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of Lj3g3v1603870.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1603870.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.