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Lj6g3v0622070.1

Overview

Field Value
Gene ID Lj6g3v0622070
Transcript ID Lj6g3v0622070.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: helicase SKI2W-like [Glycine max] gi|356569566|ref|XP_003552970.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF005198
35 1254 1220 0
IPR016438
MobiDBLite
mobidb-lite
53 92 40 – –
SMART
SM00487
267 447 181 3.10E-26
IPR014001
Gene3D
G3DSA:3.40.50.300
268 443 176 8.20E-35
IPR027417
Pfam
PF00270
274 420 147 6.30E-15
IPR011545
ProSiteProfiles
PS51192
279 434 156 21.21
IPR014001
SUPERFAMILY
SSF52540
283 419 137 9.31E-41
IPR027417
CDD
cd00046
286 415 130 6.62E-19 –
MobiDBLite
mobidb-lite
477 531 55 – –
SUPERFAMILY
SSF52540
524 576 53 9.31E-41
IPR027417
Gene3D
G3DSA:3.40.50.300
543 579 37 3.70E-19
IPR027417
ProSiteProfiles
PS51194
548 745 198 10.514
IPR001650
CDD
cd00079
556 696 141 7.66E-09 –
SMART
SM00490
610 696 87 1.30E-14
IPR001650
SUPERFAMILY
SSF52540
616 708 93 9.31E-41
IPR027417
Gene3D
G3DSA:3.40.50.300
619 705 87 3.70E-19
IPR027417
Pfam
PF13234
753 1052 300 1.50E-40
IPR025696
SMART
SM01142
1076 1254 179 2.80E-86
IPR012961
Pfam
PF08148
1080 1249 170 7.70E-51
IPR012961

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003724
Molecular function RNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006401
Biological process RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

Genome browser

LORE1 insertions 62

Expression data

Expression pattern

Expression pattern of Lj6g3v0622070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0622070.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.