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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018936
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We have found 48 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.606s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0052210.1
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
3 domain predictions
1 GO term
Lj1g3v0052210.2
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
3 domain predictions
1 GO term
Lj1g3v0052210.3
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 365938 407245 -
3 domain predictions
1 GO term
Lj1g3v1304780.2
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like isoform X3 [Cicer arietinum] gi|502137006|ref|XP_004502930.1| chr1 15710544 15722508 +
2 domain predictions
1 GO term
Lj1g3v1304780.3
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like isoform X3 [Cicer arietinum] gi|502137006|ref|XP_004502930.1| chr1 15711238 15722508 +
3 domain predictions
1 GO term
Lj1g3v1318170.1
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Glycine max] gi|356525675|ref|XP_003531449.1| chr1 15936860 15943176 +
2 domain predictions
1 GO term
Lj1g3v3404520.1
n.a. PREDICTED: phosphatidylinositol 4-kinase alpha-like isoform 1 [Glycine max] gi|356508450|ref|XP_003522970.1| chr1 39292084 39310363 -
2 domain predictions
1 GO term
Lj1g3v3404520.2
n.a. PREDICTED: phosphatidylinositol 4-kinase alpha-like isoform 1 [Glycine max] gi|356508450|ref|XP_003522970.1| chr1 39292084 39300499 -
2 domain predictions
1 GO term
Lj2g3v1414920.1
n.a. PREDICTED: phosphatidylinositol 3-kinase, root isoform-like isoform X1 [Cicer arietinum] gi|502092928|ref|XP_004489830.1| chr2 22191929 22201896 -
3 domain predictions
1 GO term
Lj3g3v3337380.1
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40671088 40687710 +
2 domain predictions
1 GO term
Lj3g3v3337380.2
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40671088 40690226 +
2 domain predictions
1 GO term
Lj3g3v3337380.4
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40678057 40696398 +
2 domain predictions
1 GO term
Lj4g3v0165070.1
n.a. PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATM-like [Cicer arietinum] gi|502133902|ref|XP_004501929.1| chr4 1932494 1943667 -
3 domain predictions
1 GO term
Lj4g3v2742900.1
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Glycine max] gi|356525675|ref|XP_003531449.1| chr4 36868214 36874530 -
2 domain predictions
1 GO term
Lj5g3v2258320.1
n.a. PREDICTED: serine/threonine-protein kinase ATR-like [Glycine max] gi|356534437|ref|XP_003535761.1| chr5 32732549 32745177 -
2 domain predictions
1 GO term
LotjaGi1g1v0180100.2
n.a. Serine/threonine-protein kinase; TAIR: AT3G48190.2 Serine/Threonine-kinase ATM-like protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A0R0KG32|A0A0R0KG32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180100 LjG1.1_chr1 34763786 34839512 +
3 domain predictions
1 GO term
LotjaGi1g1v0318700.1
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG9|K7KLG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76772668 76785107 +
3 domain predictions
1 GO term
LotjaGi1g1v0318700.2
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76782719 +
2 domain predictions
1 GO term
LotjaGi1g1v0318700.3
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG9|K7KLG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784049 +
3 domain predictions
1 GO term
LotjaGi1g1v0318700.4
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784049 +
3 domain predictions
1 GO term
LotjaGi1g1v0318700.5
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784049 +
2 domain predictions
1 GO term
LotjaGi1g1v0318700.6
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784744 +
3 domain predictions
1 GO term
LotjaGi1g1v0318700.7
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784755 +
2 domain predictions
1 GO term
LotjaGi1g1v0318700.8
n.a. Phosphatidylinositol 4-kinase; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG9|K7KLG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76776028 76784049 +
3 domain predictions
1 GO term
LotjaGi1g1v0570200.1
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT1G49340.1 Phosphatidylinositol 3- and 4-kinase family protein; Swiss-Prot: sp|Q9SXA1|P4KA1_ARATH Phosphatidylinositol 4-kinase alpha 1; TrEMBL-Plants: tr|I1JSQ3|I1JSQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0570200 LjG1.1_chr1 110309598 110330597 -
2 domain predictions
1 GO term
LotjaGi1g1v0570200.2
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT1G49340.1 Phosphatidylinositol 3- and 4-kinase family protein; Swiss-Prot: sp|Q9SXA1|P4KA1_ARATH Phosphatidylinositol 4-kinase alpha 1; TrEMBL-Plants: tr|I1JSQ3|I1JSQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0570200 LjG1.1_chr1 110312717 110330358 -
2 domain predictions
1 GO term
LotjaGi2g1v0321200.1
n.a. Phosphatidylinositol 3-kinase; TAIR: AT1G60490.1 vacuolar protein sorting 34; Swiss-Prot: sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform; TrEMBL-Plants: tr|A0A151TLR0|A0A151TLR0_CAJCA Phosphatidylinositol 3-kinase, root isoform; Found in the gene: LotjaGi2g1v0321200 LjG1.1_chr2 79596761 79607136 -
3 domain predictions
1 GO term
LotjaGi2g1v0321200.2
n.a. Phosphatidylinositol 3-kinase; TAIR: AT1G60490.1 vacuolar protein sorting 34; Swiss-Prot: sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform; TrEMBL-Plants: tr|A0A151TLR0|A0A151TLR0_CAJCA Phosphatidylinositol 3-kinase, root isoform; Found in the gene: LotjaGi2g1v0321200 LjG1.1_chr2 79597718 79604424 -
3 domain predictions
1 GO term
LotjaGi2g1v0321200.3
n.a. Phosphatidylinositol 3-kinase; TAIR: AT1G60490.1 vacuolar protein sorting 34; Swiss-Prot: sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform; TrEMBL-Plants: tr|A0A151TLR0|A0A151TLR0_CAJCA Phosphatidylinositol 3-kinase, root isoform; Found in the gene: LotjaGi2g1v0321200 LjG1.1_chr2 79597718 79605165 -
3 domain predictions
1 GO term
LotjaGi2g1v0321200.4
n.a. Phosphatidylinositol 3-kinase; TAIR: AT1G60490.1 vacuolar protein sorting 34; Swiss-Prot: sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform; TrEMBL-Plants: tr|A0A151TLR0|A0A151TLR0_CAJCA Phosphatidylinositol 3-kinase, root isoform; Found in the gene: LotjaGi2g1v0321200 LjG1.1_chr2 79597718 79605165 -
3 domain predictions
1 GO term
LotjaGi2g1v0459200.1
n.a. Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|I1LFQ6|I1LFQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459200 LjG1.1_chr2 95265424 95310480 +
3 domain predictions
1 GO term
LotjaGi2g1v0459200.2
n.a. Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A0R0LMJ1|A0A0R0LMJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459200 LjG1.1_chr2 95265736 95302315 +
3 domain predictions
1 GO term
LotjaGi3g1v0502700.1
n.a. Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1; TrEMBL-Plants: tr|K7LPC3|K7LPC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502700 LjG1.1_chr3 92081007 92097181 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.1
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78531586 78541580 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.10
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.11
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.12
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.13
n.a. Phosphatidylinositol 4-kinase; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|I1KTP1|I1KTP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78535583 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.3
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78538850 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.4
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78539739 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.5
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.6
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.7
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.8
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|A0A0B2RP37|A0A0B2RP37_GLYSO Phosphatidylinositol 4-kinase beta 1; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi4g1v0409200.9
n.a. Phosphatidylinositol 4-kinase; TAIR: AT5G64070.2 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|G7JBJ1|G7JBJ1_MEDTR Phosphatidylinositol 4-kinase beta; Found in the gene: LotjaGi4g1v0409200 LjG1.1_chr4 78532267 78540304 +
2 domain predictions
1 GO term
LotjaGi5g1v0351400.1
n.a. Serine/threonine-protein kinase; TAIR: AT5G40820.2 Ataxia telangiectasia-mutated and RAD3-like protein; Swiss-Prot: sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR; TrEMBL-Plants: tr|A0A0B2RY81|A0A0B2RY81_GLYSO Serine/threonine-protein kinase ATR; Found in the gene: LotjaGi5g1v0351400 LjG1.1_chr5 66723959 66738620 -
2 domain predictions
1 GO term
LotjaGi5g1v0351400.2
n.a. Serine/threonine-protein kinase; TAIR: AT5G40820.2 Ataxia telangiectasia-mutated and RAD3-like protein; Swiss-Prot: sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR; TrEMBL-Plants: tr|A0A0B2RY81|A0A0B2RY81_GLYSO Serine/threonine-protein kinase ATR; Found in the gene: LotjaGi5g1v0351400 LjG1.1_chr5 66726302 66737628 -
2 domain predictions
1 GO term
LotjaGi5g1v0351400.3
n.a. Serine/threonine-protein kinase; TAIR: AT5G40820.2 Ataxia telangiectasia-mutated and RAD3-like protein; Swiss-Prot: sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR; TrEMBL-Plants: tr|A0A0B2RY81|A0A0B2RY81_GLYSO Serine/threonine-protein kinase ATR; Found in the gene: LotjaGi5g1v0351400 LjG1.1_chr5 66726302 66738502 -
2 domain predictions
1 GO term