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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0165070 |
| Transcript ID | Lj4g3v0165070.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATM-like [Cicer arietinum] gi|502133902|ref|XP_004501929.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 99 | 99 | 3.60E-215 | – | |
| ProSiteProfiles | 1 | 261 | 261 | 12.044 | ||
| PANTHER | 1 | 99 | 99 | 3.60E-215 | ||
| Coils | 123 | 150 | 28 | – | – | |
| PANTHER | 133 | 578 | 446 | 3.60E-215 | ||
| PANTHER | 133 | 578 | 446 | 3.60E-215 | – | |
| Gene3D | 301 | 435 | 135 | 1.40E-12 | – | |
| SUPERFAMILY | 303 | 464 | 162 | 5.20E-45 | ||
| ProSiteProfiles | 393 | 580 | 188 | 31.39 | ||
| SMART | 394 | 580 | 187 | 1.50E-06 | ||
| ProSitePatterns | 397 | 412 | 16 | – | ||
| Pfam | 400 | 576 | 177 | 2.50E-26 | ||
| Gene3D | 436 | 451 | 16 | 8.60E-31 | ||
| SUPERFAMILY | 498 | 578 | 81 | 5.20E-45 | ||
| Gene3D | 505 | 578 | 74 | 8.60E-31 | ||
| ProSitePatterns | 527 | 547 | 21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA damage checkpoint | A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds. | ||
| Biological process | Telomere maintenance | Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. | ||
| Molecular function | Protein serine/threonine kinase activity | Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Response to ionizing radiation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays. | ||
| Molecular function | Kinase activity | Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. | ||
| Biological process | Histone phosphorylation | The modification of histones by addition of phosphate groups. |
Expression pattern of Lj4g3v0165070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0165070.1, powered by CORGI.
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