Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0054209.1

Overview

Field Value
Gene ID Lj0g3v0054209
Transcript ID Lj0g3v0054209.1
Lotus japonicus genome version MG20 v3.0
Description ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11831
1 201 201 2.60E-90
IPR022801
Hamap
MF_01306_B
1 199 199 30.539
IPR005709
Phobius
SIGNAL_PEPTIDE_N_REGION
1 14 14 – –
Phobius
SIGNAL_PEPTIDE
1 29 29 – –
Gene3D
G3DSA:1.10.1050.10
1 95 95 7.40E-45
IPR001912
TIGRFAM
TIGR01017
3 199 197 1.30E-65
IPR005709
SMART
SM01390
3 88 86 3.70E-22
IPR001912
Pfam
PF00163
3 88 86 2.50E-21
IPR001912
SUPERFAMILY
SSF55174
3 199 197 3.53E-70 –
Phobius
SIGNAL_PEPTIDE_H_REGION
15 22 8 – –
MobiDBLite
mobidb-lite
20 44 25 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
23 29 7 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
30 201 172 – –
ProSitePatterns
PS00632
87 111 25 –
IPR018079
SMART
SM00363
89 152 64 1.00E-19
IPR002942
ProSiteProfiles
PS50889
89 150 62 15.471
IPR002942
Pfam
PF01479
89 136 48 1.10E-20
IPR002942
CDD
cd00165
89 148 60 1.76E-19 –
Gene3D
G3DSA:3.10.290.10
96 184 89 2.20E-39
IPR002942

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of
GO:0019843
Molecular function RRNA binding Interacting selectively and non-covalently with ribosomal RNA.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0054209.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0054209.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.