Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0249100 |
| Transcript ID | LotjaGi4g1v0249100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60204615..60206181) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGGATACATAAACGTGAAACACTGGCTTCCTCCACATACAGCTGCAAAACCTAGAAGCAAACCAGAGAGGAGGAGCA GCCATGGTTCACGTCTCCTTCTACAGAAACTGTGAGTCTCTCTCTACTTCCTCCCTTCCTCTTCTCAATTCTCGATCCAT CAATTTCATTTGAATTTTTCCATTTGATTTTCCTCTGATCCATTGCATTTGTTTTTCACAGATGGGAAAACCTTCAAGAA GCCTCGTCGCCCCTACGAGAAGGAGCGTTTGGATGCAGAGCTGAAGCTCGTCGGAGAGTACGGGCTCCGCTGCAAGAGGG AGCTCTGGAGGGTGCAGTACGCTCTCAGCCGCATCCGCAACAATGCTAGGAACCTGCTGACGCTTGACGAGAAGAACCCT CGCCGGATCTTCGAGGGTGAGGCTCTTCTCAGGAGGATGTTCCGTTATGGGCTTCTTGATGAGACCCAGAACAAGCTTGA TTATGTGCTCGCTCTTACTGTTGAGAACTTTCTCGAGCGCCGCCTGCAAACCCTGGTTTTCAAGTCTGGTATGGCTAAGT CTATTCATCATGCTAGGGTTCTCATCAGGCAGAGGCACATCAGGTTCTCCCTTTTTCATTTCTGATATTTTTTCATATTG GGTATTGTTGTATTCAATGTTTAATACTTGTCCTGTGTATGCTATAGAACTTGGTTATTGTGACATGTTTGGTTTACTTT GTGATATTTGGCATTAGAATTGGTTAATGATGTGCTATGCTATATAGGACCTGGTTATTCTGCCATGTTTGATTCACTTT GTGATATTTGGCATTAGAATTGTTTAAGGATGTGCAACTGGAGATTTATTTCTATTACTTGTCAAGTAGTTTTTGTTGTT TCTGAGTCAGATATTCATGGTTAGCAGAGCTTGATTTGTGATGGGTTTTCTACAAAAACATGTTTTGTGGCTACTTACTA CTTATTGCATCTTGAACCCTTGTAAAGAAAGTATGTATGCATAGCTAAGCTTGATTTGTTCTCTTTAATTCAATGTTATA TGATGGGTTTTCTACATAAACACGTTTTCTGGCTACTTACTACATTGTACTTGATTGCAACTTGAACCCTTGATGATCTT CTTTATATGATTTCTCAACCCCTGTAGCTTTTTTTTGCAATTCAGTTATCCTCTGTTTTGAATTATGGACATAATGCACT GCTTTTAGAACTTCTCCTAGCATCTGTTGAAAGTAGCATCAATTTTCAACAAATAATACATCTGTTTGCATTTTGTATGT ACAATTAGTTTTTGAAACATGCTTATAAGGTTTTTGTTTGTTTGTTTAAGTTTAATGAAATGCTTTATTGAATGGATTCT TATGTCATTTTTGTTCTTGTCAGGGTTGGGAGGCAGGTTGTGAACATCCCATCATTCATGGTGAGGATGGATTCACAGAA ACACATTGACTTTTCACTCACAAGTCCTCTTGGTGGTGGTCGCCCAGGACGTGTGAAGCGAAAGAACATGAAGGCTGCTG CCAAGAAGGCTGCTGGTGGCGACGGTGATGAGGAGGATGAAGATTAA
CDS sequence (LotjaGi4g1v0249100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCACGTCTCCTTCTACAGAAACTATGGGAAAACCTTCAAGAAGCCTCGTCGCCCCTACGAGAAGGAGCGTTTGGA TGCAGAGCTGAAGCTCGTCGGAGAGTACGGGCTCCGCTGCAAGAGGGAGCTCTGGAGGGTGCAGTACGCTCTCAGCCGCA TCCGCAACAATGCTAGGAACCTGCTGACGCTTGACGAGAAGAACCCTCGCCGGATCTTCGAGGGTGAGGCTCTTCTCAGG AGGATGTTCCGTTATGGGCTTCTTGATGAGACCCAGAACAAGCTTGATTATGTGCTCGCTCTTACTGTTGAGAACTTTCT CGAGCGCCGCCTGCAAACCCTGGTTTTCAAGTCTGGTATGGCTAAGTCTATTCATCATGCTAGGGTTCTCATCAGGCAGA GGCACATCAGGGTTGGGAGGCAGGTTGTGAACATCCCATCATTCATGGTGAGGATGGATTCACAGAAACACATTGACTTT TCACTCACAAGTCCTCTTGGTGGTGGTCGCCCAGGACGTGTGAAGCGAAAGAACATGAAGGCTGCTGCCAAGAAGGCTGC TGGTGGCGACGGTGATGAGGAGGATGAAGATTAA
Protein sequence (LotjaGi4g1v0249100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLR RMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRMDSQKHIDF SLTSPLGGGRPGRVKRKNMKAAAKKAAGGDGDEEDED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 197 | 197 | 4.9E-124 | – | |
| PANTHER | 1 | 197 | 197 | 4.9E-124 | ||
| SMART | 8 | 108 | 101 | 8.5E-26 | ||
| TIGRFAM | 11 | 166 | 156 | 1.6E-64 | ||
| SUPERFAMILY | 12 | 159 | 148 | 3.04E-34 | – | |
| Pfam | 12 | 64 | 53 | 1.3E-7 | ||
| ProSitePatterns | 107 | 131 | 25 | - | ||
| Gene3D | 108 | 165 | 58 | 2.8E-12 | ||
| Pfam | 109 | 151 | 43 | 3.8E-13 | ||
| ProSiteProfiles | 109 | 183 | 75 | 11.175 | ||
| CDD | 109 | 151 | 43 | 5.20801E-9 | ||
| SMART | 109 | 180 | 72 | 3.0E-4 | ||
| MobiDBLite | 162 | 197 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Small ribosomal subunit | The smaller of the two subunits of a ribosome. | ||
| Molecular function | RRNA binding | Interacting selectively and non-covalently with ribosomal RNA. |
Expression pattern of LotjaGi4g1v0249100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…