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Lj4g3v1635200.1

Overview

Field Value
Gene ID Lj4g3v1635200
Transcript ID Lj4g3v1635200.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 40S ribosomal protein S9-2-like [Cicer arietinum] gi|502152082|ref|XP_004508755.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11831
1 197 197 3.20E-151
IPR022801
PANTHER
PTHR11831:SF13
1 197 197 3.20E-151 –
SMART
SM01390
8 108 101 9.40E-25
IPR001912
TIGRFAM
TIGR01018
10 166 157 1.30E-64
IPR005710
Pfam
PF00163
11 64 54 1.10E-07
IPR001912
SUPERFAMILY
SSF55174
12 159 148 3.04E-34 –
ProSitePatterns
PS00632
107 131 25 –
IPR018079
Gene3D
G3DSA:3.10.290.10
108 154 47 1.30E-14
IPR002942
SMART
SM00363
109 180 72 3.00E-04
IPR002942
ProSiteProfiles
PS50889
109 183 75 11.175
IPR002942
CDD
cd00165
109 151 43 5.89E-09 –
Pfam
PF01479
109 151 43 4.00E-13
IPR002942
MobiDBLite
mobidb-lite
165 197 33 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of
GO:0019843
Molecular function RRNA binding Interacting selectively and non-covalently with ribosomal RNA.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj4g3v1635200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1635200.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.