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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0346500 |
| Transcript ID | LotjaGi6g1v0346500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65892461..65899032) extracted from Lotus japonicus Gifu genome v1.2.
CTAGCCTCACTCACAAGTCACATACATACCGTGGTTCGCTTCATCGTCTCTTCTCGTTTCGTCTCCTTCACATCGCACTC TCGCACTGTTCCTCTCTCAATCTCAGGTAATTCCAAACCCTATTTCCTCTTTCTCCATTTCCGTTCTCACAACTCTCTAT CTCTCTCATTTCTGATTTCACTTCCCATTTCCATTTTCATTTTCCTGTTACTTTATTTCACGATTCAATTTTTGCTCGAT ACAATCGATGAAAGACATGTAAGTGGTTCAATACGACTTTTGATTTGTGCATTCTGTATTTCTTGATTTCTGAATTCACT GTTCTTGAAGCGAATTTTTGAATTGAATTGTTTTTTTTTCCAATAGTTTTTGGAAGCATTTATTGTCAGATATTAAGGGT TTGTGATGAGAGAGAAGGAAATTCAATTATGCACTCCGTTGTTGAAGCATTGTGTTTTCAATTTCAGAATGGAGTAAACA AACATCGTAATCTGCATTTACCGTTTTGATACTATGCCTAGTGAGTCACAGATTCAACACTGTGTTTGTAATCCACATAT ACTTCTTGCATTTACTATTTAGCCTGTTTAGTAAATTCTAGATTTTGGAATTATGTTGTGCAGTTATCATCAATTATTAT ATACATTTAATATCGTGTCCGAAAGCCTGATTCTTTCTTAAAGATAGGTTCTTTCTAGAAGCCATGTTTTGTTTCTATTC TAGCTTAACTAGTAATTTCTACGCTCTACAGTCATTGTAGGGAACATCTTGCTGTTTAATAACTTTGATTTTCTGTTTTT CATTCGATGTCTAACAATAGATCTATGGTTGTATATAGTAAATGTTTTCTACCTATTGATAAGTACTATTCACTAGTCAA TTGAAGACTTGAGATTATTTGATTGAGGTTTTATATTTCCGTGATTAACTTAGATAAGGATGTTCTATATCGTCTTTTTC ATTTCAATCTTTTTGTTTAGGAGAAACCACTCATTAGTTGCAAATTAGGGACATGTGGAAACTGCCATAATTAGGAACAC AGATTAAGTATTGTCATGGAAGATTTCTTGATAGACTTTCTCAAACTGTTCCTACTATTTTGTTTAGACGTCAAAGATCC CCAAACATTGCCGGCCTACTCCATTGACGACCCTGTCTTGCAACAGTTTCCCTTATGTAGTTATAGATTTACTATTTATT ACCAGCTATAGCAAGCTAGCTTTAATTTCTTTAACTATTTCTATATCCTTTACTTTTTTACTTATACTTAACAAATTGGA ATTCTTGATCCAATTAAAAAAATATATGTTTCATAATTTTCGAATGAAATTTGTCAGTAAATGGATTCTTCTTGTATACA AATTAATCCCTGCTTATTTATAAGCTTGTACAAATGGAATGATGAGGGAGATTTGTGGGGTGCGGAGGTTTAGATATGTA TGCAGGGACTTAAGAAATGGATAATATGCAATTTGACTTTTGCTTCTGAAATTGGATTTAGTCATGATCTACGTGGCAGT GAAATCTGGTCTCTCTTATGATGAGCATAGCAGCTAGGATTTTATTTACCAAATTATTCAATTGTAAATAGATATGCTGT GTGGGACCTAAATGAAGTGAGGATCTTGATTTGGTCCCTTTCCTTGATTGAGTGTGTGAAAGGGGGGTAGGGAGTAGCAT CTTTGGATAGATGGCAATGGCAGAGGGGAGAACAAGGAGGAAGACAGAAGCAGCTAGGTGGCTAGCAATTCTTCCACAAG GTGGGTGAGTGATTATCAGTGTTGTTGAATGGTTTCTATAGCGCCGCTATATAGCATAGTGTCCAATAGGCCATCCGCAA TTGCTATGCCGTTAGGTAGTGGAAAACGCTATCGGCAAGATTGCACCCGTGATGGCGATTTACATTGTTGCTGCCATATC GGAAATATGTTCCATTTTTTTTTTAACAACTGGAAACAAGCCTCACATGATAGTCACATAAGGTTTTGTCCCCTTTCCTC ATATCCGGCTTTTGTGAGTAGGCTTTTCTGGTGAGTTTCAGGCACCAATAACAGCCACACAGCTTTCTGATTCATATATT GTTTGCCATGCTCTGTTTTTTCTTTCTTTCTTTCTTTCTTCTTCCTTTGCCTTATCTGTTGTTTTCTATTTCGTTTTCCA TCACTTTCATTGTTCTTCCTTTTCATGCTCTTTTATTGACTTATTTCATTCTCTCCTTTTCCCTTTCTTTCACGTTTATT TTAATACTCTGTTTTTCTTTCTAAGGGTTGTGTTTTGTCTTTTATGTTTAACCTTGTTTTAGTGTTCTCATTAGTATTTT TCCTTGAACAATTGATATTTTTTGAGTTAATATTCTGCATTGTATGTCATTTGTCTTATTTTTATTTTTATGCAACTTAT TTTGTTCCCCAAGAAGCTTGTGACAAACTTATATTAATTTTTACTTTATTAAACTGCTATGCGTCTTATGCTATTTACCT GCGACGCTATCCACTATATGATATAGTGGATTTATGGCTCTCTGCCATTTTCCACGATCAAAGATTAACAACACTGGGCT ATCACTCGCGAGAGATGTGGAACCAAGACGAAATACCCATGGGGTTAAGAAGTTAGGATTAAGAGTGTGACGTAGAGCCT TTTAAATGAGATTGACGCCTCTTATACTTTCTAAGTGTAAGTTTGTTTATGTGTTTATAGTGATTTAAAGGTTATTCTTT ACTTCTTTATGCTACATTATATATATATATATATATATATATATATACTTACATATATGAATTTATATGCATATATATTA ATTTTGTTAAATCTTACCATTCAATTTGTGATTTTTTTATTTTCACCCCCTTTCTTATTAAAGCTAAAACCCTGATTTTG ACTAGTTCGGTGCACTCTGTGATTGGTTTATTTTTTTAAAGTTAGTTAGAGGTTGGAGGGGATTAGCTATATAAATAGAG GGAAATCAGACTGTTAAAGTAGGAGGAGGGGATTAGCTTTATAAATTAGAGGGAAATCAGTTAAGGGGATTATTCTGTAC TTTTGATAATTTGAGAGTGAAAGTTGAAATCCATCGTGAAGGGGAAAGTCTTGGGGAAAATTCATATTTTTTGGGTTCAT TCTGTACTTTTGGTGGTTTGAGAGTGAAAGTAGAATTCCTTTGTGAAGGAGAAACCCTTGGGGAGAATTGATATTTTTGG GTTCCTTACAAAATTTTAAATATATGGTGTTTCTGATACCAAATGTGCAATATTTAGCTTAGAGTCATCCTTAATCGGTT TTTTAATTAAAATAAGTATCCTCTTCTTAGATCCCATAATTTGAGTTGCCTTTTACATAAGTTTGAGAAAATATATACTT CAAGACTTGGCTGAGCTGAAACTCTATGTCAATGGTGTTGAGCTTTGTGATATTTGAATCTAATTGTAGATAGGGCTTTC AAAATATTTGATATGTTACTTGTGTGTATTTCCTTTATATTATTTGTAGTGTCAATGCTTTCAGTTAGTTTGATATTACT GTCCCTCTCAGTTGAGCTAGGTAGTACCACATTTTAAGCTCTCTGAATGGTGGAGAAAGATGATAAGGAAATGATTTCAA CATCCTGGATTGCTTGTGATTTGTGAACCACTGATTATTGTTTACTTGTTGTTAATGGTGGACTACAAGCAATTCCCGTG GTGTTTAGTTATGTGTTTCTTCTTGTGCTATGCTAAATGCTAAGTTTTCAAGTTTCAAAAATAGCTGTTACATCTTTATG AACAACAGTAACTGTTCTTTGCAACCTTTTTTCAGGAGCTTGTGATCTGAAAATACTGATGGAGCTGAGTAGCATCAAAG ATGCATTTGACCGTGTGGCTAAGAAGCAAAAGCTATCCTCTTCCAAATCTCAGGAAGTTGTTGACCAAGTGGGTCGTGAA ATTGAGCAGGCATTGGCAACCATTCAGTCACCACATGACCCCTCAATTCTTGATCAGAAATCTATTCTTACAGAACTTAA GAGTAAGCTGAATGCTATTGGGGCACTTCAACAGTTAGAAGGATCACATAAGGAATGGAACCAAAGTCTCTCAAAGTATC AAAAACTCCTTGAAAAATTGTTCAACCCTGACATATCAAAGGCATACAGAAATGTGGACTTTGACACACATATTATCAAC CAGATTATTGCAAGCCACTTTTACCGTCAAGGTTTATCTGATCTTGGTGATAGCATCATTAATGAGGCTGGAGAGCCTGA AGCAACTGCACTGAGATCTCAGTTCTTGGAAATGCACAAGATTATTGAAGCTATGAGGGGTAGAAACATTCAGCCTGCTC TCTCATGGGTCACTGCCAATCAAGAGAGACTTGCCAAGATTGGTTCCAATCTTGAGCTTAAGATCCACACGCTGCAGTTT GTAGATGTTCTGCAAACTGGAACTCGAGCTGATGCCCTGAAATATGCCCGGACATATCTTTCTCCTTTCGCTTCCATCAA CAAGGATGAGTTCCAAAAGCTTATGGGCTGCCTCTTGTATGCTGGAAGGCTTGCAAACTCCCCTTATTCTGAGTTGATCT CCTCAACTCATTGGGAGATGACAACTGAAGAGCTGGCACGGCAGTTCTGCACTCTCATGGGGCAGTCCTATGAGAGCCCA CTGAGTATGGCAGTTGCAGCTGGAGTTGCGGGGTTGCCTACACTGTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCA GGAGTGGCAGGAAATGAAACAATTGCCGGTGCCTGTAGATTTGGGTAAGGAGTTTCAGTTCCATTCGATTTTTGTTTGCC CTGTGAGCAGGGATCAAGGTAGTGATGAGAATCCTCCAATGCTGCTTCCATGTTCACACGTCCTTTGCAAACAATCAATT GCCAAGTTGTCCAAAAACAGCACGCGAACATTCAAGTGTCCATATTGTCCAGCGGAAGCTACTGTTGCACACTGCAGACA GCTGTATTTCTGATGGTGTTTCTGCATTTCTCCCACCTTTGTTGCAGTACAGCATTTATAGCTTTGTGTTTGTGTTTGTA AATAGATATTCTAAATTCTCCTTTTTTTGATATAAAGAGATATCCTAAATTCTCTTTGACATTTGACAAGACTGGTGAGC GGATAAAAATTGAAAGAACCTGTGGATATGTTTGTTTTGGGTTTTTGGAGTGCTTAATTTGCCATTCCAATCACAGAAAT GTGGAAAGCAAGTGTCCTGCTCCCTTTCCGTTAAAGGTAATGCAATTTGAAAGTAAACATATTCTTACTTGGACCGTTTA ATGTATGTTTCTATCATTGTCCATTCATGTTTGAGTTTACATGGCAAAATCTTGTTTCTTCGTTGATGCATTGTGATGTA TGCTTTCTGAAGTAAATTAAGTGGGCTAACTTTATCTATAGTTCTTGCTCTCCTAAGTCCCAAGTCTGAACTATTATAAA TGTGCTTCCATGAGTGTGTTCAGCTATGTACAATCATGGTTGCACTAACTCTGCTTATATTCACCGGTGTCTTAAAATCT ATGTTTTCATGGCAATAGCTAGAAAGATTAGGAGATGCTAAGAGCATGTTTGGTTTACCATTGATAGTATGGAAATAAGG AAATAACACATTTTGTTGAAGTAGTTTCAAAAGGTGTTATTTTTCCGTTTTTATACTTTTTAACGGTAACCCAAATAGAC TCTAATTAAAATTAGCTCTTGACATAAGCCATTATTGGGAGTTGGGACTCTCTTGGTCACCCTTGTTTCTCAACATGGAA TAATTGGCAATGTTTTTTTGCCACCCAAAGCAATCATAAAGATCAATGGTGGGAAATGCAGAAAACATGTACAATATACA TTCAACTTCAGGCAAATTTATAAAGTAACCTCAGTTTTCTTTATCAGCTAATTTTGCAAAAGAAAAACAAATCACAAATA ACCAATATGAAATTTGAAGTCAAACCCAACCCAACCCAACCCAAGTAGTTTGCAACTTTCTAAGGAAAACCAATTATCCT CTTGAATCCTGGAAACAAGGCAGAAGAAGAAGTATCAGAATGAGGTGAATTTGGTGGCGGTGCGTTCAGATATTCCTCCA CCATTTGTTTGGTAGACCTAGCTGACAATGGATGAAAACAGGAACCCCACTCTGCAACGAACCCTTTGACCAGCACCAAT TTCTCGTCTTCACCCATCTTGCTCCAATTCTCTCTGGCCTCGTCTTCCTTGAGGCCCAGATATTCGCAGAGCTCTCGGAA TAGGATCTTTCTGCTCTTCCTCATAGCGTCCTCTGCTAGCACCGCGCGGGCGTTGATTCTGGTGGCCCTTGCGGCTAGCT CTGATGCGAGTGCGGCGTCGCTGATGCCGCCGCTGCCGCTGCATGAGATTCGCGTGGTGAGGTTGTGGCGGGTGATGAAG AGAGTGACAGGGGAATTGGTGAAGAGAGTGGGAATTTGATAAATCTTGAGAGCCATTTTGATTCGATTGATTCAGATTTT GGTTTTTGGTGTGATGGAATCGAAGCCAAGGATAAAAGAGGATATTTTTTTCTATTTTAGCAACTATGATTAAATTTTTG CATAAAAATAGC
CDS sequence (LotjaGi6g1v0346500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGAGTAGCATCAAAGATGCATTTGACCGTGTGGCTAAGAAGCAAAAGCTATCCTCTTCCAAATCTCAGGAAGT TGTTGACCAAGTGGGTCGTGAAATTGAGCAGGCATTGGCAACCATTCAGTCACCACATGACCCCTCAATTCTTGATCAGA AATCTATTCTTACAGAACTTAAGAGTAAGCTGAATGCTATTGGGGCACTTCAACAGTTAGAAGGATCACATAAGGAATGG AACCAAAGTCTCTCAAAGTATCAAAAACTCCTTGAAAAATTGTTCAACCCTGACATATCAAAGGCATACAGAAATGTGGA CTTTGACACACATATTATCAACCAGATTATTGCAAGCCACTTTTACCGTCAAGGTTTATCTGATCTTGGTGATAGCATCA TTAATGAGGCTGGAGAGCCTGAAGCAACTGCACTGAGATCTCAGTTCTTGGAAATGCACAAGATTATTGAAGCTATGAGG GGTAGAAACATTCAGCCTGCTCTCTCATGGGTCACTGCCAATCAAGAGAGACTTGCCAAGATTGGTTCCAATCTTGAGCT TAAGATCCACACGCTGCAGTTTGTAGATGTTCTGCAAACTGGAACTCGAGCTGATGCCCTGAAATATGCCCGGACATATC TTTCTCCTTTCGCTTCCATCAACAAGGATGAGTTCCAAAAGCTTATGGGCTGCCTCTTGTATGCTGGAAGGCTTGCAAAC TCCCCTTATTCTGAGTTGATCTCCTCAACTCATTGGGAGATGACAACTGAAGAGCTGGCACGGCAGTTCTGCACTCTCAT GGGGCAGTCCTATGAGAGCCCACTGAGTATGGCAGTTGCAGCTGGAGTTGCGGGGTTGCCTACACTGTTAAAGCTGGCAA ATGTAATGGCAGCAAAGAAGCAGGAGTGGCAGGAAATGAAACAATTGCCGGTGCCTGTAGATTTGGGTAAGGAGTTTCAG TTCCATTCGATTTTTGTTTGCCCTGTGAGCAGGGATCAAGGTAGTGATGAGAATCCTCCAATGCTGCTTCCATGTTCACA CGTCCTTTGCAAACAATCAATTGCCAAGTTGTCCAAAAACAGCACGCGAACATTCAAGTGTCCATATTGTCCAGCGGAAG CTACTGTTGCACACTGCAGACAGCTGTATTTCTGA
Protein sequence (LotjaGi6g1v0346500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSSIKDAFDRVAKKQKLSSSKSQEVVDQVGREIEQALATIQSPHDPSILDQKSILTELKSKLNAIGALQQLEGSHKEW NQSLSKYQKLLEKLFNPDISKAYRNVDFDTHIINQIIASHFYRQGLSDLGDSIINEAGEPEATALRSQFLEMHKIIEAMR GRNIQPALSWVTANQERLAKIGSNLELKIHTLQFVDVLQTGTRADALKYARTYLSPFASINKDEFQKLMGCLLYAGRLAN SPYSELISSTHWEMTTEELARQFCTLMGQSYESPLSMAVAAGVAGLPTLLKLANVMAAKKQEWQEMKQLPVPVDLGKEFQ FHSIFVCPVSRDQGSDENPPMLLPCSHVLCKQSIAKLSKNSTRTFKCPYCPAEATVAHCRQLYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 384 | 384 | 7.2E-209 | – | |
| PANTHER | 1 | 384 | 384 | 7.2E-209 | – | |
| Coils | 70 | 90 | 21 | - | – | |
| ProSiteProfiles | 109 | 141 | 33 | 7.674 | ||
| Pfam | 148 | 289 | 142 | 1.8E-29 | ||
| ProSiteProfiles | 148 | 205 | 58 | 10.21 | ||
| SMART | 148 | 205 | 58 | 1.1E-5 | ||
| SMART | 201 | 295 | 95 | 1.9E-22 | ||
| Gene3D | 317 | 383 | 67 | 2.6E-9 | ||
| SUPERFAMILY | 321 | 380 | 60 | 2.83E-8 | – | |
| CDD | 325 | 373 | 49 | 2.05363E-30 | ||
| SMART | 327 | 370 | 44 | 6.9E-4 | ||
| ProSiteProfiles | 327 | 370 | 44 | 12.793 | – | |
| Pfam | 327 | 368 | 42 | 2.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0346500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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