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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR026854
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.224s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0111239.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508720697|gb|EOY12594.1| chr0 48303244 48313192 -
2 domain predictions
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Lj0g3v0313759.1
n.a. Autophagy-related protein [Medicago truncatula] gi|357475421|ref|XP_003607996.1| chr0 163787175 163801654 +
2 domain predictions
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Lj0g3v0313759.2
n.a. Autophagy-related protein [Medicago truncatula] gi|357475421|ref|XP_003607996.1| chr0 163787175 163794029 +
2 domain predictions
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Lj1g3v4690380.1
n.a. Vacuolar protein sorting-associated protein 13A [Medicago truncatula] gi|357482269|ref|XP_003611420.1| chr1 55494612 55501469 -
2 domain predictions
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Lj2g3v1988700.2
n.a. Pleckstrin (PH) domain-containing protein isoform 2 [Theobroma cacao] gi|508776870|gb|EOY24126.1| chr2 29485873 29533570 -
2 domain predictions
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Lj3g3v1011180.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508720697|gb|EOY12594.1| chr3 13513520 13525522 -
2 domain predictions
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Lj4g3v1930960.1
n.a. vacuolar protein sorting-associated protein vps13 (exp=-1; wgp=0; cg=1, related [Medicago truncatula] gi|124360283|gb|ABN08296.1| chr4 27085033 27090633 +
2 domain predictions
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Lj4g3v2250370.1
n.a. Vacuolar protein sorting-associated protein 13A [Medicago truncatula] gi|357479115|ref|XP_003609843.1| chr4 31134660 31136882 +
2 domain predictions
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LotjaGi1g1v0116300.1
n.a. Vacuolar protein sorting-associated protein, putative; TAIR: AT5G24740.2 vacuolar protein sorting-associated protein, putative (DUF1162); Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein sorting-associated protein, putative; Found in the gene: LotjaGi1g1v0116300 LjG1.1_chr1 18275889 18324688 +
2 domain predictions
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LotjaGi2g1v0417400.1
n.a. Pleckstrin (PH) domain-containing protein isoform 2; TAIR: AT4G17140.3 pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C; TrEMBL-Plants: tr|G7JYP4|G7JYP4_MEDTR Vacuolar protein sorting protein; Found in the gene: LotjaGi2g1v0417400 LjG1.1_chr2 91545297 91593826 -
2 domain predictions
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LotjaGi3g1v0150800.1
n.a. UHRF1-binding protein 1; TAIR: AT3G20720.2 amino-terminal region of chorein; Swiss-Prot: sp|Q6BDS2|URFB1_HUMAN UHRF1-binding protein 1; TrEMBL-Plants: tr|A0A1J7GZD2|A0A1J7GZD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0150800 LjG1.1_chr3 20284797 20296866 -
2 domain predictions
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LotjaGi3g1v0235500.1
n.a. UHRF1-binding protein 1-like; TAIR: AT3G20720.2 amino-terminal region of chorein; Swiss-Prot: sp|A2RSJ4|UH1BL_MOUSE UHRF1-binding protein 1-like; TrEMBL-Plants: tr|K7LW91|K7LW91_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0235500 LjG1.1_chr3 37453877 37464912 +
2 domain predictions
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LotjaGi4g1v0073100.1
n.a. Autophagy-related protein 2; TAIR: AT3G19190.2 autophagy 2; Swiss-Prot: sp|F8S296|ATG2_ARATH Autophagy-related protein 2; TrEMBL-Plants: tr|G7JLA6|G7JLA6_MEDTR Autophagy protein; Found in the gene: LotjaGi4g1v0073100 LjG1.1_chr4 9270973 9284317 +
2 domain predictions
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LotjaGi4g1v0073100.2
n.a. Autophagy-related protein 2; TAIR: AT3G19190.2 autophagy 2; Swiss-Prot: sp|F8S296|ATG2_ARATH Autophagy-related protein 2; TrEMBL-Plants: tr|G7JLA6|G7JLA6_MEDTR Autophagy protein; Found in the gene: LotjaGi4g1v0073100 LjG1.1_chr4 9271042 9283829 +
2 domain predictions
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LotjaGi4g1v0279000.1
n.a. Vacuolar protein sorting-associated protein, putative; TAIR: AT5G24740.2 vacuolar protein sorting-associated protein, putative (DUF1162); Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein sorting-associated protein, putative; Found in the gene: LotjaGi4g1v0279000 LjG1.1_chr4 64923067 64965169 +
2 domain predictions
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LotjaGi4g1v0334900.1
n.a. Calcium-dependent lipid-binding family protein isoform protein; TAIR: AT1G48090.4 calcium-dependent lipid-binding family protein; Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|A0A072V2R4|A0A072V2R4_MEDTR Calcium-dependent lipid-binding-like protein; Found in the gene: LotjaGi4g1v0334900 LjG1.1_chr4 71424511 71491444 -
2 domain predictions
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LotjaGi4g1v0334900.4
n.a. Calcium-dependent lipid-binding family protein isoform protein; TAIR: AT1G48090.4 calcium-dependent lipid-binding family protein; Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|A0A072V2R4|A0A072V2R4_MEDTR Calcium-dependent lipid-binding-like protein; Found in the gene: LotjaGi4g1v0334900 LjG1.1_chr4 71425799 71491118 -
2 domain predictions
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