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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039189
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.445s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0439500.1
n.a. RNA polymerase II C-terminal domain phosphatase-like 2; TAIR: AT5G01270.1 carboxyl-terminal domain (ctd) phosphatase-like 2; Swiss-Prot: sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2; TrEMBL-Plants: tr|K7L1T3|K7L1T3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0439500 LjG1.1_chr1 93545380 93556947 -
2 domain predictions
2 GO terms
LotjaGi1g1v0529200.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT2G33540.1 C-terminal domain phosphatase-like 3; Swiss-Prot: sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3; TrEMBL-Plants: tr|I1KWR8|I1KWR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529200 LjG1.1_chr1 105567118 105575319 -
2 domain predictions
2 GO terms
LotjaGi1g1v0661000.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A072UR90|A0A072UR90_MEDTR Carboxy-terminal domain phosphatase-like protein; Found in the gene: LotjaGi1g1v0661000 LjG1.1_chr1 122167576 122175926 -
2 domain predictions
2 GO terms
LotjaGi4g1v0054200.1
n.a. RNA polymerase II C-terminal domain phosphatase-like 1; TAIR: AT4G21670.1 C-terminal domain phosphatase-like 1; Swiss-Prot: sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1; TrEMBL-Plants: tr|A0A0S3QZI5|A0A0S3QZI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054200 LjG1.1_chr4 6525487 6537808 +
2 domain predictions
2 GO terms
LotjaGi4g1v0286500.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.3 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A151SFP9|A0A151SFP9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0286500 LjG1.1_chr4 65853572 65862059 -
2 domain predictions
2 GO terms
LotjaGi4g1v0287100.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|V7BX02|V7BX02_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0287100 LjG1.1_chr4 65942422 65948231 -
2 domain predictions
2 GO terms
LotjaGi4g1v0287100.2
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A0L9TRV4|A0A0L9TRV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0287100 LjG1.1_chr4 65942641 65946510 -
2 domain predictions
2 GO terms