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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0286500 |
| Transcript ID | LotjaGi4g1v0286500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.3 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A151SFP9|A0A151SFP9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0286500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65853572..65862059) extracted from Lotus japonicus Gifu genome v1.2.
CACTCGAGTCTTGACTAAACCCTAGCAAGAGATGAAGAAGACGCATCGCAAACCCTTCCAAATCTTCATCCAATCGCCGC ACCTCCAACAACTCCGCCACGAATCCGTCACCGCCGATCAAACCCTCGCCGACCTGAAACGCTCTCTGTTTCCGGCATCA CACCACCTATCCTCTTTTTACTTCACCCTCCATGGGAAACCCCTTCCCGAAGAAACCCCTCTCTTAACCCTCCGAATTGC CCCTCTCTCCACCCTCGTCCTCCAACCCCGCCTCCGCGGCGGGGTCGCAAACGACGCCGAGTCCCGCGACGGCTACCTGG ACATATACACGGAGAAAACCCCCGACAGTGTGGACTTTAACAAGCAGAGGCTGTCGAAATCGATGAACTGCACACTCTCG AAGGTTCCCTTGAGGGAACCCTGCGTGATCGACAAGCTTGGGAATGTTTTCAACAAGGAAGCGCTAGAGGGGGCTTTGCT TGGGAAAAATCTCCCTGAGAAGTTTTGGCACATACAGGATTTGAAGGACTTGATCACGATTTGGCTTTCTTCGATTCCTG GGGATGAAGATGGGGCTAGGTTTCAGTGCCCTGTTTCCGGTCTTGAATTCAATGGAATGAATAGTTTTTTCGCTCTGAGG AATTGTGGGCATGTTCTGAGTGCAAAGGCTTTGAAGGAGGTTAATTCGTCGAGTTGTTTGGTTTGCCACGAGGGTTTTGC GGAGTTTGATAAGGTTTTGATCAATGGGAGTGAAGGTGAAGGTGAGGTTGTTGTTTTGAGGGAGAAGACCAGGATGAATC CCTCATATCAATCCATAGACGTGAAGAACACAGGTAGGTTCTCTGTTCTTCCTACTTTCGCATTCTTTCTTTTCGTTGCG AACTATCAATTCAAACTGCTTCTTTATCGAAGTCATGGTGAAAATGTCTGCAAGCTGAAGGTTGGAATGCACATGTCATT GTCTTGACCAAGAAATTTTAGCAAATAAAATGACTATGAATATTGATGTGTTTAGTCTGTTCATAAAAAAACTGAGGTTT GCTGCAATATGAAGATCAACTTGATTATCATGCACTTGTAATCTTGGAGATAAGTCGGGGGTCGACATTCGTGATATTAA CTTGTTGCTCATCTGATTCTCAATTGGTTAAAGCTAAATTACCGCTAATAATCTTTGTTTAATTTTCTAATTGGTTGTGG TTTGTATAATCTCTTCATTTATGGGTTTTGCTTCCTCCTAATTTGGCTTTTTTGGATGGCTGACTTCATTGCATTTCTTG ATGCTGCACTAGATGCAAGCTCATCCAGCTCATCATCTGATAAAGAAGCTGAAAACATAGATGAGGCTGAGAGTGGGAGG TGATTGTGTCCTCTGACTCCTTATATGAGTTAAACTGTTGCCAATTGGAATTTCAAATGTTTTGAAGTTTATTAGGAATG AGTTGACATATTCAGATATCTGATTATGATTTATGAGACCAGTGCAGATTTAAACATTGTCTAGATACAAAGATATGTGG TGTTTTAATAAATAGTTCTATTGGAAAATTGGTTTCTAATTGAGTGCAATGGCTTGTACTTTATACATGTAATTGACCCC ATCTACTAGGACAAAGTTTTGTTGGTGTTATCATCAGGTACTGTGGTGGTTCAGACTACAGACTTCACTAATAGTTTAGC AAGACATCAGCTTCAGTTATAGTTCAGACTTTTGTAGCATTTTGAATTAATTTTCATTTATCACAGATCATTATGGAGTC ATAACTTCTGAAAAATCATGATAGATCATGCCTCCAGGGTTTGATCACATTTAGGGCATTACTTTTACTATGGATAGAGG CAGACTAAAATGATAATCTGGATAAGGGATCTTGACTTTAGCCTTCTTTCCATCAATCATGTTATAGAAGAAATGTTGCT AATAGTATATATCGTTTCTTCTTACTTAACAACTCATATTACTGTGTACCTTAACCGTGTCTTGTTTTCAATATCTTCAC TGTTGTATGATAACTTATTTTTCTGGTTTGTGGAATTGTTAACCAATTAGAATTAACCTGACTGGAAGACTAAGACTTTA GGGTTTGTGTTCTTGGTTTCTTTGGAGAGATAATTATGTATTGGTTTAATTTTTTCTTGTTTCAATTTTTTTTGTTAAAT TTGACTGTTATAACTTACACTTTAACTTATGTATTAAAGCAGTACCAAAAGACGAAAAGTTGAAACTGAGGAAACTGAGG GATCTACTTTGGAAGGAATTATGGGACCGGAATTAGGTATTCTTTACTGGGAACCAAAATCATCTCACACATATGCAGCA GGGTGTAATTTTCAAGAATTTATTCACACACAACCTGATTAGAACAAAAGGATGTGATCATCTTTTTTAGTTTTGCCTCT ATAGCCCTCTTGAAGTATCAACTGGTTCTGTCTATGCTTATTAAATTTGTTTTGCTCTTTGTAATTTGCTTTACTAAACC ATTTCCCTCCTTCTCTATGACATGTACTGATCGCTATTTACTGAAGGTGGACATTCTTACAAAGTAATGATACATGAATA AACAGACTTCTCTTATGAGTAACAGGATAACTACTAGTCCTTACTCCTTACTGAAATTTATTTGTAATGACTCTGCACAA TATTTTCACACTTAGTAGACCCGCACGTCTTATATGTTGATGGAGCATAACATGAGTTAAATCATTAATTATTTTTTGAT TATCTAATTGAAGCTATAATAAGGAAACCATAATGGTATGGTTGGAAATATCACTAAAAATGATCCTCTGGAAGTTTAAA AGTTAATAAAGGAGAGTGTTCCAATGGTTTAAAATTGCTTGTGGCTTGAAATGGGAGTTGAGTTTTTTTGATGGGGAAGC TCTTGCACTTCAGATTTAATAGATTCTTAATAGATGTTTGTGCAATTGTTATTACAGTTTTTATCATTATTCTGGAAAGT GTTGTAACTTTCTCATTTTTTTTTTCTAGTTGCACAGGCCTCTGTGGGAAATGGATGTATACATCCTTACTCATTTAGAG GTATGTGTATGGATTGTGAGCAAGATCTGGATGAGAAATATGGCATACCATTTGAATACATACATGAGGTATGTATATTT TCCAGAAATGTATCTTGTGGAATTACCAATTTAGCTTTTGATTGTTGTTCCTGCTGCATGTCAGTTTTCAAGTAACTTGA GTTAAATCAATTTCATTGTTTTTGATCCTAACCAAAAAGTGTAGTGGTGAGCCTGTATAGCAAAAGTGCAAAACTCACTT GGGATATTTCTTTCCTTTGGAAGTAATTGTTAGTGTAAGGAGTACTATACTGTTGTAACTTGCAGCGCATTAATTTATAA GTATACAGCTGAATGGTTTATATACTCTACTATAGTTTGATGAGGCTCTCTTGGTTTTATAGTTATAACATATCCTCTAA TATTTAATTTAATATCGAAGTCATATATCATTTTGATAATCTGGTTAGAATGATGTTTGGGTGGGTGCACTTAACCTCAT CAATTTATGCAATTTAGCCGAGTAATAGTTATTATTTTTATTAAATCTGTGGGAAAATTTGTGTTTGCAGGGACTGAGAC TTCATGATGTGGAAATTTCTAGAGTGCGGAATGAAGAGACAAAGCATTTTTTATGTCATAAAAAGCTATACTTGGTTCTT GATCTCGATCAGACATTGCTAAATTCCGTTCGCTTTGATCGTTTGAGCTCAAAAGAGTTGTATTTACTTACCCATACAGA TTCTCTAGGAGGTACAGGCTGACCATTGTTCTTTTGCTTCTTGTAATTAGCATCTATATTTTAAATTAGCAGTTTTGCTT AAAACGCATTTAGTATTTTCCCCATCTCTGTTTTTCTCACATATCAACTAATTTGTTTTGTTGGTGAAACTCTTTCTCAC ATACTGCTACTATGTTTTGATGATTATCTGTTGGCAATTTGGCATTATATAACTCTCTTGGTTTATTAATTTTTAAAACA ATGTAGCAAAAGTGTGGTAGAGTGAGTCTATTCTGATCTTGCACTTGTATTCATTATTTGCATCTTGAAAGTTTCGAACA GGTTTTATGCACTCTTTGTCCATGATTCTGTTTTGAAAAGTTTGCTGAATAAAGAGATTGATTTGTTGATGTTTCTTTGA ATTCTAAAAGACAAATATCCTTAGTTTTATTGGACCATGCTGCATGTCGCATCACTGCATCATCATATAAAACAGCATAT GTTATAAAGATAAAAATTGGAGTTACACTATCCTTAGAGTGTGACTCTTCCGTTGGTCAAAGTTCATTGAATAGATTTGT ATGATAACACCAATTTTTGCATTTTATTAGAATTAGGGCCTTTCTGACTCACTCCAACCTTGTCTTGATCTCACCGCTGA TGTTTCGGGTTTTTAGTGGTTCTTACATGTGCTGTCTTTCTGAACTTGTATATAATCAAACTATAGATAGCCTCTTCAAA TCAGACACCGACATGATGACCAAGTTGAGGCCTTTTGTCCGCACATTTCTCAAAGAAGCAAGTAAATACTTTGAGATGTA CATATACACCATGGGTAATCGGAGCTATGCACAGAAGATGGCTAAGCTGCTTGATCCTCAAGCAGAATACTTCAAACGTA AGGTGATTTCTCGAGACGATAACACGCAAAAGCATCAAAAGGGTCTTGATGTTGTGCTGGGGCAAGAAAGTGCCGTCCTT ATTCTTGATGACACAAAAAAAGTGAGTGCACTGCTAGTTTCTGACTTGCATGTAATGCTAAATTACCTAATTGGAATGTT TGTTTGATGGTAGTTATTTTCTATTGAAGACAGTCCTAGAATATTTTTCTTTTTACATATGTATGAACATAAGAGCATCT ACAATGGAGGTGGCTTACACCATATCTTAGCCATATAAGAGATGTTGGAGCATGCCCAGGTGAAAGTTTGGGTGCTTGAA AATAAGAGATGTTGCTTCCAGAAGCAATGATTGCTTTAGGTGGTTTGTTATTAAAAAATAATTAATTCTCTTTCCTGCAT CAACATTTCATTCTCCTTCTTTCATAAGTGGAATTAAAAAAACATAAATACATGGGGTCTACTGTGCGACCCAAACATAA ACCCTTTGTGTCATCTTGAACCCACGGGAATTGTGTTAAGCTACAAAAATAAGAAACCACCATTGTGGATTGGTTTATGT GTCTTGAACTTGAAGTCAATTTCTTTTTATATATAAGGGGAGAAAAATATGATTTCAATGGTAGGTCGCATTGAAAGTCA TTCAGTCTATCACTCACCCATTATTGTAGTATGATAGGACTCACAAATTTGGTCGGATTACTCTGCTGAAAATGTGTCAG TTTGGGTGCAATTTTATAATGTTAATTAAAGAAAGTTACTACTCTTTAATTTATGATTCGGGGAATAGGGCATAAGAAGG AAGAAATTAGTAGTCCTTGCATTTTCATTTGATGATCTTAGGAATTAAGAGTGCAACAATGCAATTGTTATCAGCTGGCT CTAGTTTTTTATACGAGCGTGTCAATACCAGCATCCTTATTCTGAGTCCTCATTTGGAAACCATTTTATGAAGTTGTATG CATCAAAATGTCAAAGCATGTTAAACTTTTTGTTTATTTAAAATTTGAAAAATATTTAGTTTTGTTTTAGTTGTTTACAT ATAAGCTTTATTCTACTATATTGCTTTCTGTAAATATAACAAGGATTAGGAAATATGGCCCTTGACTCATTCGAAGTTAC TAGTGTCTTGAATTATGTATTTATTTTATTTTATTTTATGAAATAAAGTATTTCTTTTTCCACTTTCCATTTATAGTTTT ATGCATATGCATACGTGAGAGAGATTGGACTATGTTAACAGATTTTCTGTTCCATTCTGGTTTTTGGGTCTTATTTATTC TGACAATCTTCACATGATTAAAAGTTTCAATGTTTTAAGTGTTTGAAGATGTGGCAGCATGGCTTTGAAAACCATCCTAT GTTGCAATTTTGACTAAGCATGATCGATCCATTTATAATATTTAAACTACTACTCTATTGGTTTCTTTTCTTTCTCTTGT GAGGGGCTATTCAGTTTTGGTGTAGTAGTTTACAGAAAGTTCATATCTGTATATAGTGAGCTCAGAGTTTGAAATGTTTT AAGATCCATCCATTTAATGTTTCAGATGTCATTCTCTGTCATTTGGGAACCTATTGACTAAAATCGCTCTTTTAATGGTT TGTATGAAAATGTTGCTTCCAAATATTATAGGTATGGACGAAGCATGAAGATAATCTGATACTGATTGAAAGATACCATT TTTTTGCTCGGAGTCGTCGGCAGTTTGGTTTGAATTTCGAATCACTTGCTGAATTGAAGACTGATGAAAATGAAACTGAT GGAGCACTTAAAAGAATTCTCGTTTTGCTCAAGCTAGTCCACTACATATTTTTTTACGTATATCACTTTCTCTTTATCTC ATCTAAGTTAGTTATTTCTGATATCATGCTATAATTCTGTTGTGGGATCCTTTTGTAGGTACTTAAAGAAGATCTTATTG ATCGAGATGTAAGGAAGGTAGTTATGAACTTATGATGCTCATATTTATTTGTCTTTTTTAACTCTTAGCTTGTGTTAGTG GAAAAGATTAGTTTTCTAATCCTAATGTGAGATTCTGTTAATGTGGTTCTTACAATCAATTTTTTTACAGGTTTTATCAT CACTTCGAACTTTCAAGTGAAGTCTTACGCGGGTGCAGGACGGATCAACAGGGAGGAGCAAGCAACTGCTTTCACGAATA ACATAACATGTTCATCATCTAGACTCAAATAGAGAGGTCATCAACTCATCATCATATTTATGGGAATTAAGATTGCTAAT TATAGTAACATGCATCATTGGGTAAATAGCCAAGTTGGTCCTTGAAAGTGTCAGGCGCTGTCAAGTAAGTCCCTAAACTT TAAAAATCCATCCCGCGGTCCCTGAATGTGGCAAACGTCATTCAAATTAATCCCTGACGTTAAAAAATGTAACGGGACGT TAACAAAATCTTTGTTTTTTAATTTTTATTCCTAGTTGGACTACATACGTGGAACTGAAGTGTTGGTAAAACATTTGGAC TCTAATTGGTCCCTGAATGTGGCAAATTAGTCCCCAATGTAAAATTCACCATTTTTAAACCCAGAAAATTAAAAACTTCA TTCTCTTTCTCCTTCTCCTCATTCAGTTTCAACCAAAAAATTCTTCCCTCTAAACAAAAAAAAACCCAGAAATTCTTCCC TCTCAACCCAGAAATTTACCTTTTTTTTATAGGCCAAGGAATATCAGCTGATCCAATCTACCTTTTCCAATTGCATAATC AAATACACAAACCGCACACACCGATCCAATCTAAAAGTCCTTTATGTTCAATTTCATCATGACCCAATTCAGGCACAAAG AGAATCTTCTTGTCCATAATATACCACTTCCATGGGTAGCCCAGATACACAGATCTGCAATGGAACCAAACGATTTCCAT CCAAGCCACAAACAACCGTAAAGCTTACAACTTTTCCTCATTTCCTCATCTCCAAGCCAAATCAATCTCACCGATCTGAA GCTTTTCTCACCAAACACTGAAAACCCAACATCCGTAGCCACACCCACTTTTCGTAACCGACACCCACTTTTCGTAACTG AACCAACCAACCTCCTTCCTAATTCAAACCTCCGACCCAGACTACCGCCGTTTCATCTCAGTTCGTCGTTTCATCTCAGT TCGTTTCTCATTTCCGCTTCATCTTCTCTTCTCTCTGTCATGTGTACGCAGATTTGAATATGAGATGCCTGCTCCTCCAT CCTCTTTGATCTGAATCTGCTTCTCTGCTTCTCACGGTAGAGTTTTGAAAGGTTTGATTTTGTGGGATGGGTTTGATTTT CTCAGGATTGGGTTTTGATTTGATGGGTTTGGTTGAAAGAAAGATGATGCATTATGTTAATTTAATGAGGGACTAAATGG AGGTTAATTTTTTTACCCTGCTTTCATTTTACACGTGGACACTCCAACATGGAAAAAAAATTCATCTCAGCGTTTACGTT AACGTCCGTCAATGGTTTTAACCTCAGGGACTAATTTGAATGACATTTGCCACATTCAAGGATCGCGTGATGGATTTTTA AAGTTTAGGGACCAACTTGAAGGCGGCTGATTGGACTGAAATTTCAGTTTGTGGCAGTTCTATATTTTTGGGCACAAACC CGGCCTATGCTCAGCTCAACATAATGATGCATGGGTAAATAGCCAAGTTGGTCCTTGAATTGTGTTTTCAGTCTCTATAA AACTAGGATAGCATGTATTCGTGCACGGAGAAGCGATTCTACAATTTGTTAAACTTGACTATGAAAATGAGTTAAGCAAT TTACATATCAATGGCTCATGGTTTTGAACTCAACTTGTTTTAATTGTTGTCTATATTACTATATAAGTGTAGATTAATCA CTTTAGCG
CDS sequence (LotjaGi4g1v0286500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACCGGAATTAGTTGCACAGGCCTCTGTGGGAAATGGATGTATACATCCTTACTCATTTAGAGGTATGTGTATGGA TTGTGAGCAAGATCTGGATGAGAAATATGGCATACCATTTGAATACATACATGAGGGACTGAGACTTCATGATGTGGAAA TTTCTAGAGTGCGGAATGAAGAGACAAAGCATTTTTTATGTCATAAAAAGCTATACTTGGTTCTTGATCTCGATCAGACA TTGCTAAATTCCGTTCGCTTTGATCGTTTGAGCTCAAAAGAGTTGTATTTACTTACCCATACAGATTCTCTAGGAGATAG CCTCTTCAAATCAGACACCGACATGATGACCAAGTTGAGGCCTTTTGTCCGCACATTTCTCAAAGAAGCAAGTAAATACT TTGAGATGTACATATACACCATGGGTAATCGGAGCTATGCACAGAAGATGGCTAAGCTGCTTGATCCTCAAGCAGAATAC TTCAAACGTAAGGTGATTTCTCGAGACGATAACACGCAAAAGCATCAAAAGGGTCTTGATGTTGTGCTGGGGCAAGAAAG TGCCGTCCTTATTCTTGATGACACAAAAAAAGTATGGACGAAGCATGAAGATAATCTGATACTGATTGAAAGATACCATT TTTTTGCTCGGAGTCGTCGGCAGTTTGGTTTGAATTTCGAATCACTTGCTGAATTGAAGACTGATGAAAATGAAACTGAT GGAGCACTTAAAAGAATTCTCGTTTTGCTCAAGCTAGTCCACTACATATTTTTTTACGTACTTAAAGAAGATCTTATTGA TCGAGATGTAAGGAAGGTTTTATCATCACTTCGAACTTTCAAGTGA
Protein sequence (LotjaGi4g1v0286500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGPELVAQASVGNGCIHPYSFRGMCMDCEQDLDEKYGIPFEYIHEGLRLHDVEISRVRNEETKHFLCHKKLYLVLDLDQT LLNSVRFDRLSSKELYLLTHTDSLGDSLFKSDTDMMTKLRPFVRTFLKEASKYFEMYIYTMGNRSYAQKMAKLLDPQAEY FKRKVISRDDNTQKHQKGLDVVLGQESAVLILDDTKKVWTKHEDNLILIERYHFFARSRRQFGLNFESLAELKTDENETD GALKRILVLLKLVHYIFFYVLKEDLIDRDVRKVLSSLRTFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 278 | 267 | 3.0E-96 | – | |
| PANTHER | 12 | 278 | 267 | 3.0E-96 | ||
| Gene3D | 53 | 279 | 227 | 3.7E-49 | ||
| SUPERFAMILY | 64 | 219 | 156 | 1.24E-32 | ||
| ProSiteProfiles | 66 | 232 | 167 | 31.358 | ||
| TIGRFAM | 68 | 215 | 148 | 2.4E-51 | ||
| SMART | 69 | 219 | 151 | 1.1E-53 | ||
| CDD | 70 | 209 | 140 | 5.00174E-33 | – | |
| Pfam | 72 | 215 | 144 | 4.5E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoprotein phosphatase activity | Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | RNA polymerase II CTD heptapeptide repeat phosphatase activity | Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate. | ||
| Biological process | Dephosphorylation of RNA polymerase II C-terminal domain | The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. |
Expression pattern of LotjaGi4g1v0286500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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