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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0661000 |
| Transcript ID | LotjaGi1g1v0661000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A072UR90|A0A072UR90_MEDTR Carboxy-terminal domain phosphatase-like protein; Found in the gene: LotjaGi1g1v0661000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122167576..122175926) extracted from Lotus japonicus Gifu genome v1.2.
TCTGTAAATTGATTGATAAAAACAGAACAGGGAAGCTATATATGATAAGAGAAGTTACCTTAAGAGATGATGATTCCAGC GCGCTTAAAAGGTTAAATAGAAATTAAAACCTGTCACGTGTTCCTTTTCTTCAAGGTGCAATTCCGTTTTCCCACACGCT GAGGGCGGCGGCGGTGCGGGTGTTGGTGGCCGTGGAAACTAAGATGAGTATTGTTACAAATTCTCCAACACATTATTCAT CAAGCATTAATGGAGATGAGTTTGAGACTGTCAGGTGCTCTTCCTCATTACCTGTTTCAAACTATTATGCGTTAATTATG TATTGGTCTAATTTTTTGTTGTTTCATATTTTTCATCAAATTTGACTTTGTTAAAACTTGTGTTCTTGTGAATCAAGCAG AAATTATTTGTAATGGTGATTGGTGAAGACTCTGCATAATATTTTCACATGCTTGTGCAATCATTATTACAGTGTTTATC TTTTTTTTGTGTAAGTGTTGTAACTCCCTCTTCTTGTTGCAGAGGCCTCTGTGGAGGATGAATGTACACATCCAGGCTCA TCTGAAGATATGTCGATACGTTGTGGGCAAAATTTGGATGGGGAATATGGCGTAACATTTGGATACATACATAAGGTACA CATTTTTTCAGAAATGTATCTTGTGAAATTACAAATTTAGCTTCGGATAGTTGTTTTGTTAGACCAACTTAATTTGAATG GTTTTCAGTGTTATTGATCATGTTCATGACCAAAAAGTGTAGTGGTGAGCCTGTATAGCACAGCTCGTCTGGATATGTTT CTTTCTATTGGAAGTAATTGTTACTGTAAGGAGTAAAATATATTGTTGTTGGGCTTTCATGTATATGTATACAGATGAAT GGTTGGTTTAGATGCTCTACAGAGTTTGATGATGTTCTTTTGGTTTTATATACATTATAACCTGTCCTCTAATATTTAAT ATAGAAAACATATATTCATTTTTATGACATGGTTAGCATGATGGTTGGGGTCTGTGCACATGACCTCACTATGTAATTAA GCATAATAATAGTTGATAGTTCATTTAACGTGGTGGATAATTTTTTATTTGCAGGGACTGAGAATTAATGATGAGGAAAT TTCAACATTGCGCAATACAAACATGAAGAACCTGTTAAGTCGTAAAAAGCTTTACTTGGTTCTTGACCTAGATAACACAT TGCTTAATTCCACTTTCGTTTTTTTATTGAGGTCAGAAGAGTTGCATTTGCTTACCCAGACAGATTCTCTAGATGGTACA TCTCAACCGTTGTTCTTTTGCTTTTGGTGATTAGCATTTGTACTTTAAATGAGCAGTTTTACTTATCGCATAGTGTTTTT ACCCATCTTTGCTTTTCTCACATATCAATTGATCTATTTTTTCAGTGCAACTTGATCTTATTATACTGTGAAAGGCCCTG AAATTAGCATAGATGTATACTTTAGTGCTACTGTGTTGTGAGGATTATCTGTTGCCAAAATCTTGGTATTATATAAATCT GTTGGTTTATAAATTTCTAAAGTCTGAATGTAGCGGAAAGTGTGGTGGAGGAATCAACGAGAATGAGTCTATTCTGGCAA TTGTGCATGTTGTTTTTGTTGAATGCATTTTGAAAGTGTCTGATAGGTACCCATATTAATTAGTAGCTGAATTAGTTAGT TGAGAGAGTTTTGCGTTTGAGAGAGTTAGTTAGAGACTGAATGAGAGAGAAATCGAATGAATGTATTAGCAAGAGAGTTA GAGAAAAATATTAATTCCAGTCGAGAGAGTTTTTGTTAGTTTTAGAAAGTTAGGGAGAGGTCTTGGGCTCTCAAAACACA AGGAGATTTGAATGTAATTATCCATTCTTGCCTAATTCCAGGTTCTGCTTCATCTTGGACAGGGTTTGTAAATTAGGAAT TGATCAATAAAATTCTCTTTTTCATCATTCTTGATCCGGTTCTTATCAGTTTCCAACAGGTTTTATGCATTTTGTCTGTG ATTCTGCTTTGAAAATTTGTTCAATAAAAAGATTTATTTGTTATTCTTTGGGTGCTAAAAGACAAAAATGTGCTGGTGTT ATTTTACATTTGATAGGACCATGTTGTTGTCGCATCTATCCATCATCATATAGAACAACATATCTATATATATAGAGAGA GACTCTTCCATTGATGAGAATTCATTGAATCAATTTGTATGATGTTAGAATATAATATAAAACCATTCATTTGACCATTA CCCAATAGCTTAAGCTTTTGGGATAATTGGTTGTTTGACATCGTATCAGAGCCTCTATGACTTAGCGGTCTAGAGTTCGA TCCTTGCTCCTCTCACTTTCTAATTAAAAAATGGAATTTAAGCCCATGGTAGGCAGGCCTGTGCGTTTATCCACGCTTCA AGCCTAAATGGCTCTTGCGTGAGGGGGCGTGTTTGAATATAATATATAACCATTCATTTGACCCTTACCCAATAGCTTAA GCTTTTGGGATAATTGGTTGTTTGACACATATGCTAACTTAAATTCTTGCATATTTTTTAGATTTATGGTCTTTCAGACT CACTACAACCTTTTCTTGATATTTGATGTTCTGAGTTCTAATTGGCTTCTTTTAAATGCTTCCAGATGTCTCCAATGGTA GTCTCTTCAAATTCAGCAATCTGCCTAAGTTGACTAAACATCAGCCTTTTGTCCGGACATTTCTAAAAGAAGTAAATAAA ATGTTTGAAATGTACATATACACCCTGGGTGGTCGGGAGTATGCGCGAGATGTTGTTAAGATGCTTGATCCTCTAGGAGA ATACTTCAATGGTAAGGTGATTTCTCAAGCTGATGGGACTGAAACAGAACAGAAGAGTCTTGATGTTGTGCCAGGGCATG AAAGTGCTATCCTAATTCTTGATGACACAAAACATGTGAGTGCATTGCCAGTTTCTGAATTGTAATGCTAAATTACCTAA TTGGAATGTTTGTTTGATAGTAGTTATTTATATGGAAGATAGTTCTATAATATTTTTACATATGTATGAAGATTATGAGC TTATATGTCTCAAAGTCAATTTCATGTTATATATAAATTATCTAGTTATAGGGGAAGAAAAATAGTCTTCCGTTGGTAAG TGACATCGAAAGCCATTCAGTCTTTCATTCATAAATTAAAGCAGTCTGATAGGACTCAACTTCTGTGGATTACTCCTAAC TGAAAAGATTTCAATTTGGGGTGAAATAACTGAAACACAATTGTATATTGTGAATTAAAAGAAAGCAACAACTCTATAAT TTATGATGCTGTGACAGGCGTAAGAAGTATGCAATTAGATTTTCCATGCATTTGCATTTGGTGCTCTCGGGAATTAAGAC CTGCTAAAACTGTTATCAAGCCTAGGGTGGCTATACAAGCATCCTGACTCTAATGCTCTTTTGGAAACCATTTTAAGAAG TTGTCTACATCAATATGTTAGAGCATGTTAAACTTTTTCTTTATATTTTTGAAAAAAAGTTAGTTTTTTATGAGGTGTTT ACAAATCAGCTTTATTCTGCAGAATTTCTTTGTGTAAAATATAACATAGATTAGAAAATGTGACTCCTGACTCATTTCCA GTTACTGGTACCTATTGAATTATGTATTATTCTTATGATATAAACTACTTCTGTTTCCATTTATAGTTTTATGTATGTAG ATTCATAAGTGAGAGGTCAGACTATGTTTAACAGATTTTTCCTTCCATTCTGGTTGGACTTTTCATTTTGACTATCTTTC CCTGAGTAAATTCTGAATGTTTAATTTGTGTGAAGATGATGTTGCAGCATGGCTTTGAAAATTATTGGCAATTTTGGCTA AGCATGATCAATCTATTTATAATGCTATGGTTATACTTTGAATATCTTGGCTTCTTTTCTTTCTCTTGCGATGGTTATAC ACTTTGTATAGTGGTTACCTGATTATTGGTTAACATTCCGTATGTATTTAGTTTTATTTATTGATTTGACATTGAATCTA ATCATTTCTAAGTACATTCTGTATAGAGAGCTCAGAGTTGGAAATGTGCTAAATCCATCCATTTAATGTTTTAGATGTCA TTCTTTACCAAATGTTGTAGGTATGGATGAAGCATACAGATAATTTGATACAGATAGAAAAATACCTTTTTTTTGCTGCT AGTTGTTGGGCGTATCGTTTAGAACGCAAATCCCTAGCTGAATTGAAGACTGATGAAAATGAAACTGATGGAGCACTTGC AAGAACTCTCGATGTGCTCAAGAGAGTTCACAGCACATTCTTTGATGTATGTCACTTTCTCATTATCCCATTCTAAGTTG GTTATTTCTGACATAATACTAAACTTGTGGTGGTGGGATCCTTTTGTAGAAACTTGAAGGAGATCTTGTTGACCGAGATG TAAGGAAGGTAGTTATGATGCTATATTTGTTTGTATTCTAACTCGCGCTTACATGGTGAAAATATTTACCATGTTTTGTA ATTTTAATGTCGGATTCTATTAATGTAGTTCTTACAATCAAGTAATTCTTTTCCAGGTTTTGAAAACAGTTCTAAGTGAA TCTTAAGCGGATTTAACTGCATTACACAGCGAAAGAGAGGTAACTCGTTGAACTCATAGCTGGCTCGTTTGGTTCATATT TTTTTTCCTGATTGTTAACCTCCTTCCTCACACTAGTTTTTCTATTTGATAATAGTGAATCTACTTCTACTACATCTTAT TCTCCAGTTACTATTCATAAGAAACAACCAATGAGCTTCCGCCACCTGGCTTTCGTTTTCGTTTTTTTTACTAGAACGTG GGATACGACGCCGTTTCTATCTCCAGCACTCTATCTCCCCATCTCCCATCAACCCTAGCTGGCTTAACGTGTTTCCTCTC CCCTTTCTACCCACTCCGTCGTACCATTCATCAGCTTGATTCTTTGATTGATCTGATGTTGAGGCTTTCCTTTCTGTTGC CGGTTGTTGTTTGCCAGACATGGTGGAACCATTCACGTCTCTACATCTCAAACTCTCCACTGTTCATTCGTCATTCAGCA GTGTTTTAGGTTTGAATCCATCAGTGTTTTGGGTTTCCTCTCCTCCTCTGTAGGGTTCTCACGTTTTCTGATCCAATTGA TGATGGAGGATTTCATCACGTTGATGGTGGCTCCAATGGTAATATGAGTTTCCTTTATCCAATTCTTCACTCTTTCATTA AAACCCCATTACTAAATTGATTGTACAAATAGTTAATCTACCAATATTCAGTCGATTGCTACTTGAGCTTTTGCACTACG AAGTGGTTACAAAATATTACATGGCACAAACTGTAATATTACCAGGGAAGGATTGGCTACCTTTTTACCTGTCTGGAGTG TTGTTATGTGTATTTCTCAATGAAGGAAAATAACAGCTATCCTTTTAAAGGGATGCAGGGGAAGGCTTATGAGATTTTGA GACCTCAATAACGCTATCAGTATGAAATGTGGCTGAAGCTGCTGAAGTGCAGAAAATGAAGAATGTTTTGTAAGTAATTA AATTTGTATACCGTAGAAAAGTGTATGATATCAAATCTTGCTCCTTCCCCCTGTTTGGTTTATGAGCATTACTGTGCAGT TAATTAGTATTCATTTTAATTCTTCCAGACTCTAAATTAGCTCTTTATTATTTATGTTGGATCTGGGTTTAAGATGCTGT GGAAAGCAGTGAAGACATTTCTAGATGCACGCACAGCAGCAAAAATTCAAGTATGGGACATTTTAGTTCAATATCATTTT CATTCTCACATAATACAATGAGGTAGCACAAAAGATTACACACCAGTTGTGACACCTCTTATTGCTAAAGAATAAAGTTA TTTTTGTTGGTTTAGGTTGAGTAATGGACACTACCAGTCGTACTGCATCTTCAACCTCACTTGAACTACTTTGATGCTTT GCAATTCATTATTTTCTATTTGATATCCTGTTCTGGAGCATTATGTTTTGGGGGAAGTTTCTACTTCAGTGGTATGCTAT CTTGATGGTGCTTGTGATAATTGAGCTTTAGAATTATTATCAATCTTAACATCTATATTTTAATGAAATCTCACTTCTAC CTTTTGTGCAGATAACTGGTTTTCCTTTCTCTCTATACTCAACCTTTGTGATTGAGGCTCATCATGGTTTTAATAAGGTT CATATCCTCCTTTCAAATTCAATCATCTATCTCTTATTTCATCAATCTTTTTAGTCTGCAGCTTTTGAGTTTGATCTGAC ATCTCATTTTACTAATATTTGTAAAATTCATATATACATTGTAACATTTGTTGTTATCTATCATACAACAAACACCATGT CTATTCTTTAAGGACATGATAAAAGGAATTTTCCTTTATGTAATAATTGGTTCACCTATTGTTGTTGCAATTATAATAGT ACATATAAAATCTCAGACTATTGGAAATAATTGTCACTTATTTAAAAACTTAGCTTTAAGTAATTAATTTGTATTACCTA CCTGTTCTTGATTTAGAGTTACTTTTGGTTGTGATGCTTTGATGCATCAAATTTAGAGTTATATATAGTTTTGCTGGCAA TGTTATGACAAAAATAATGGCCCTAAACTCTACTGCCCAAGTAGTTTCCAACTCTCTTCTTTGGTTTTCTTGATTCCATT GGTTGTGAGAAAAAGGGTGATCACAAGGTTTTTATCCAAGTGTTGGAAGTTTAAGGATCTTTTAACAAGCCACAGTTTAT GGAAAACCCAACATTGCTTGAGTTTTAACCTATGTTGCAAGCTTTATTAGTTTCGTTGAATAACATATGACTTATTGGCC TTTTCTAATTTAACTATGACTATGTCGTTTCAATTCAGATGCTTGCTTTAGACTTTAGACAAATTGAGCTCAGGTACTTG AGAGCTTTTTGGCATGATATCAGAGTTTTTTGAATTCAGCTACTTGCTTTAGACTTTAAAGAAATTAAACTTATGTACTT CAGAGCTTTCTGGCATGATCTCTGTATTCAAAGGAGATAATTTCTTTTTTATAATTTTTCAATATAAGGGCAGTCAGGGA CTGCATGGCTGATAGCTGAAGTGAACTGAATTTGGTTAATGAACTTGATTCTTTCTTAATCTAAGATGCTATGTGAGTTT GGTCCGTGTGACATGTGCTTTTCTTTCTCAATATGATACACTCTTGAGGTGATAATGAACTATCCCTATCTTTATCAAAT TCAAAAATGGTACTTATTTCAATCTCTTATCTTTATTGAGTGTAAGACGGGGATATTTCATGGTTGCAAGAAATGCTTCT CAAGTAAAGCAACAAAAGAGAAGCATTTCTTGCAGCCATCTTGCTCTCACGTGGAAGTTTGATTTAGATTTTTTATTTGC TTTGCTCTCTACATCAGTTCCATTCTTTTTTTGTGGAGAAATAGTTACACCCTTAAAAATGAGGTAGACCAAAAGACTAC ACACCAGTACGCAAAGCCAAAAAAAAAAGAACTTTGCGCTTTAAAGACTTCCGGCCTCTTCTTCCTTGCTTTGTGAAATT TTTATAATTCTGAACAATTAGTTTAGCTTGCTGAACTGTATGGACTAGAGTTTCCCTGTATTTTTTATCGGTGGAATTTA TTTTTGTATTATGCCATCTCATAAAGGGATTGTGGCCCTTTCACCTAATCCTCTGAGTGTTCGTTTTAATTTGTGGCCCT TGCAACATCTAATGCTCAGAATTATCATCTACCATCTATGCTCCATAAAAAGTTGACTTTGATGATATCAATCTATCATT CTTTGCCTTTAAGCCTACAACAAATGCAGGCTCCTCTTTTTATCATGATGCTAGAAGAAAAATAAGCAAACCATATGCAT ATAATTTACGTGCTTGGTGGTTATAAAATTATATTTTTATGTCACCTTGAATTTGAAAGAAAATATATTTTAAATTTTAT TCCCAACAGGGTCCATCAGTTCTATCTAGAACTCCTCAAGTATTTCTGGATGAGTATTTACAAACCATTCATGAACATTG ATGTAATCCTGCAAACAAGAACTTGAATTACAGATCCATTAAAACAAAATTTATGGAAGATACTTATGTGAGTGAGATCT TAAACACTAACCTTGCTCTCTTTCAATTTAACAATAAACGATTCTTCGTTGTCCCAAAACTCTCTTATGCTATTGTTCTT CATTTTGCAATTTTCTGGAATTTTCTTTTTACCACCGGAAGAAACAGATCAAGTGGAATGGGTTTTTAACTTTCAATCGC TCCCTATTTATACATGCAATATGTATTCAATTTTTGTTTCAAATCACTTTTAAGCAAATCAAGAATCTGTTTAACAAAGA AATAAATGATTGTCGTATAATTCAATTCTGG
CDS sequence (LotjaGi1g1v0661000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACCTGTTAAGTCGTAAAAAGCTTTACTTGGTTCTTGACCTAGATAACACATTGCTTAATTCCACTTTCGTTTT TTTATTGAGGTCAGAAGAGTTGCATTTGCTTACCCAGACAGATTCTCTAGATGATGTCTCCAATGGTAGTCTCTTCAAAT TCAGCAATCTGCCTAAGTTGACTAAACATCAGCCTTTTGTCCGGACATTTCTAAAAGAAGTAAATAAAATGTTTGAAATG TACATATACACCCTGGGTGGTCGGGAGTATGCGCGAGATGTTGTTAAGATGCTTGATCCTCTAGGAGAATACTTCAATGG TAAGGTGATTTCTCAAGCTGATGGGACTGAAACAGAACAGAAGAGTCTTGATGTTGTGCCAGGGCATGAAAGTGCTATCC TAATTCTTGATGACACAAAACATGTATGGATGAAGCATACAGATAATTTGATACAGATAGAAAAATACCTTTTTTTTGCT GCTAGTTGTTGGGCGTATCGTTTAGAACGCAAATCCCTAGCTGAATTGAAGACTGATGAAAATGAAACTGATGGAGCACT TGCAAGAACTCTCGATGTGCTCAAGAGAGTTCACAGCACATTCTTTGATAAACTTGAAGGAGATCTTGTTGACCGAGATG TAAGGAAGGTTTTGAAAACAGTTCTAAGTGAATCTTAA
Protein sequence (LotjaGi1g1v0661000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNLLSRKKLYLVLDLDNTLLNSTFVFLLRSEELHLLTQTDSLDDVSNGSLFKFSNLPKLTKHQPFVRTFLKEVNKMFEM YIYTLGGREYARDVVKMLDPLGEYFNGKVISQADGTETEQKSLDVVPGHESAILILDDTKHVWMKHTDNLIQIEKYLFFA ASCWAYRLERKSLAELKTDENETDGALARTLDVLKRVHSTFFDKLEGDLVDRDVRKVLKTVLSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 8.8E-76 | – | |
| Gene3D | 1 | 223 | 223 | 1.8E-44 | ||
| PANTHER | 1 | 221 | 221 | 8.8E-76 | ||
| SUPERFAMILY | 2 | 168 | 167 | 5.73E-30 | ||
| ProSiteProfiles | 5 | 176 | 172 | 27.569 | ||
| TIGRFAM | 5 | 159 | 155 | 2.8E-47 | ||
| SMART | 8 | 163 | 156 | 1.1E-36 | ||
| CDD | 9 | 153 | 145 | 3.28516E-26 | – | |
| Pfam | 11 | 156 | 146 | 3.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoprotein phosphatase activity | Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | RNA polymerase II CTD heptapeptide repeat phosphatase activity | Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate. | ||
| Biological process | Dephosphorylation of RNA polymerase II C-terminal domain | The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. |
Expression pattern of LotjaGi1g1v0661000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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