Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR020978 is a Cryptochrome C-terminal.
<p>Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants [[cite:PUB00053367]]. Cryptochromes are inactive monomers in the dark but change its conformation to homooligomers upon photon absoption [[cite:PUB00099815]]. This entry represents the C-terminal end of Cryptochrome proteins from plants, which is typically between 113 and 125 amino acids in length. The domain is found in association with [pfam:PF03441] and [pfam:PF00875].</p> <p>In Arabidopsis, a conformational change in the C-terminal domain is required for activity [[cite:PUB00099817]]. The domain is know to interact with the protein COP1 [[cite:PUB00099816]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Cryptochrome 1, partial [Lotus japonicus] gi|477504441|dbj|BAN14730.1| | 9 | ||
| – | Cryptochrome-1-like [Glycine max] gi|359806517|ref|NP_001241002.1| | 24 | ||
| – | Cryptochrome-1-like [Glycine max] gi|359806517|ref|NP_001241002.1| | 5 | ||
| – | Cryptochrome 1, partial [Lotus japonicus] gi|477504443|dbj|BAN14731.1| | 10 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 12.50 |