Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR022379 is a 11-S seed storage protein, conserved site.
<p>Plant seed storage proteins, whose principal function appears to be the major nitrogen source for the developing plant, can be classified, on the basis of their structure, into different families. 11-S are non-glycosylated proteins which form hexameric structures [[cite:PUB00001358], [cite:PUB00004572]]. Each of the subunits in the hexamer is itself composed of an acidic and a basic chain derived from a single precursor and linked by a disulphide bond. This structure is shown in the following representation.</p> <pre> +-------------------------+ | | xxxxxxxxxxxCxxxxxxxxxxxxxxxxxxxxxxNGxCxxxxxxxxxxxxxxxxxxxxxxx |------Acidic-subunit-------------||-----Basic-subunit------| |-----------------About-480-to-500-residues-----------------| 'C': conserved cysteine involved in a disulphide bond. </pre> <p>Members of the 11-S family include pea and broad bean legumins, oil seed rape cruciferin, rice glutelins, cotton beta-globulins, soybean glycinins, pumpkin 11-S globulin, oat globulin, sunflower helianthinin G3, etc. This family represents the precursor protein which is cleaved into the two chains. These proteins contain two β-barrel domains. This family is a member of the 'cupin' superfamily on the basis of their conserved barrel domain ('cupa' is the Latin term for a small barrel).</p> <p>The signature pattern for this family includes the conserved cleavage site between the acidic and basic subunits (Asn-Gly) and a proximal cysteine residue which is involved in the inter-chain disulphide bond.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Legumin storage protein 5 [Lotus japonicus] gi|206712292|emb|CAR78996.1| | 23 | ||
– | Legumin storage protein 5 [Lotus japonicus] gi|206712292|emb|CAR78996.1| | 14 | ||
– | Legumin storage protein 5 [Lotus japonicus] gi|206712292|emb|CAR78996.1| | 26 | ||
– | 11S seed storage globulin; TAIR: AT5G44120.3 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P11828|GLYG3_SOYBN Glycinin G3; TrEMBL-Plants: tr|B5U8K6|B5U8K6_LOTJA Legumin storage protein 5; Found in the gene: LotjaGi1g1v0709000 | 22 | ||
– | 11S seed storage globulin; TAIR: AT5G44120.3 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P11828|GLYG3_SOYBN Glycinin G3; TrEMBL-Plants: tr|B5U8K6|B5U8K6_LOTJA Legumin storage protein 5; Found in the gene: LotjaGi1g1v0709200 | 22 | ||
– | 11S seed storage globulin; TAIR: AT5G44120.3 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P02858|GLYG4_SOYBN Glycinin G4; TrEMBL-Plants: tr|B5U8K1|B5U8K1_LOTJA Legumin storage protein 2; Found in the gene: LotjaGi5g1v0181400 | 21 | ||
– | 11S seed storage globulin; TAIR: AT5G44120.3 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P02858|GLYG4_SOYBN Glycinin G4; TrEMBL-Plants: tr|B5U8K2|B5U8K2_LOTJA Legumin storage protein 3; Found in the gene: LotjaGi5g1v0181600 | 21 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 14.29 |