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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0327800 |
| Transcript ID | LotjaGi5g1v0327800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D-3-phosphoglycerate dehydrogenase; TAIR: AT4G34200.1 D-3-phosphoglycerate dehydrogenase; Swiss-Prot: sp|O49485|SERA1_ARATH D-3-phosphoglycerate dehydrogenase 1, chloroplastic; TrEMBL-Plants: tr|I1LEI9|I1LEI9_SOYBN D-3-phosphoglycerate dehydrogenase; Found in the gene: LotjaGi5g1v0327800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64507654..64511991) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAGGTTGATTGATAAACCCTTTGATGTGAGAGGTTTCATTCATTCTTTATAAGACAATCACCAACCCACTCTCTTTT ACTTCCCTTTGAAAACTTGCGACTACTCCTATACTCACTTCCAAACATGGCCGCCGGAACCACCGCAGTAGCTTCCAAAA CCCTCCGACTCCCCTCTCCCTCACTTTCTCTCTCATCAAAACTCCCACTCTCCTCCGCCTTCTCCGTCTCCCTCCGCCGC CACGGCCACCGTTCCCGCCCCCTCGTCGTCCTCGTCTCCGCCTCCCTCGACGCCAAACCCACCGTCCTCGTCGCCGAGAA GCTCGGCGAAGCGGGTCTCAAACTCCTCAAGGACTTCGCCAACGTCGACTGCTCCTACAATCTCACCCCTGAGGAGCTCT GCACCAAGATCTCCCTCTGCGACGCCTTAATCGTCCGCAGTGGCACCAAGGTCAATCGCGAGGTGTTTGAATCCTCCGCT GGTAGGCTCAAGGTCGTTGGAAGAGCTGGCGTCGGAATCGACAACGTGGATCTCGCCGCCGCCACTGAGCATGGATGTTT GGTTGTCAATGCCCCCACCGCCAACACTGTTGCTGCCGCTGAGCACGGTATTGCCCTCCTCGCCGCCATGGCCAGGAACG TTGCTCAAGCTGATGCCTCTGTTAAAGCTGGTATGTTCACTCATTTTGTCGAGCACCTTCTTTGCTTGTTAGATCGTGTT ACTGTTGTACCATGGTTGATTTGCTTTACATTTGAGTCCTTTGTTTGTTTGCTTGTTTGGATTCGTTTGGATTTATCGTG TTTGATGTACCCATGTATTGACTTGAAACGTCATTTTGATGAATCTTCTCTTTCTGGAACCAAATCTTTGAATTAATATT TCCTGTGTAAAGGGTGACTTTTCTTTTCCTGATATATACATTTGTGTGTGGCTCACTCTTTTTGTACTTGTGTTGAATAT AAGGTTGTAGTTTATTGTTCTTTTGATGCTGTTTTTGTTTTGGTTGTGTTGTTGGTGCGGATTCTGTTATTGATTTGCCT CATGGTGGTTGTTTAATGCAGGGAAATGGCAGAGAAGCAAGTATGTTGGAGTGTCCATGGTTGGGAAGACACTAGCTGTG TTGGGATTTGGGAAGGTTGGCACTGAGGTTGCTCGTCGTGCCAAGGGGCTTGGTATGAATGTCATTGCACATGATCCTTA TGCCCCTGCGGATCGTGCTCGTGCTATTGGTGTGGAGCTTGTGAGCTTTGATGAGGCCCTTGCCTCTGCGGATTTCATTT CTCTGCATATGCCTCTTACTCCTGCTACTTCAAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTCGA ATTGTGAACGTTGCTCGTGGAGGGGTCATCGATGAGGATGCTCTTGTTAGGGCTTTGGACTCAGGAATTGTAGCTCAGGT TCTTGTCTCTCATCTCTTATTTTGAAATTTGAAGCACTAATAGTTGACTTTAGAGGTAAATAATTAATCAATTGGGTCTC TCCCTACATAAGGAATAATTAATGATAGCTTTGTGTCTCTTTGTTTCAGGCGGCTCTTGATGTTTTCACTGAGGAGCCAC CAGCAAAAGACAGCAAGTTGGTTCTTCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAG GTAAGTTACTTGAAGCAATTGGTTATGACTATGAGCTTTACATTTTTTTCACTTGTCACTGATGTTTTATAACCTTTTGG AAATGATGACCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTGGTTGGGGCATTGAGAGGGGAGCTTGCCGCTACTG CAGTCAATGCACCAATGGTCCCCTCAGAGGTACTGTAGAAAAATTCATCTTAAGCCTTTTCCATTTCATGATAAATAATC TTACATCATGATACTGGTATTCTCCTCTTCCTAACTGGTATCCTTTTCATGGTGAATAACTTGACTTCGTGTTACAGCTG TTTGGCATGAGAAAATCATTGTTGTATTCATTAACTCTTTGTTTAACTAGGCTCAAATATTGAAAATAATATTTGGAACA CGGCGCCTTATTATTCTTTAACTGTTATTTGCTCTTGTTTCAAATTAAGTACTTAATGTAATGTGAAGGTTTGGTTTGAG AAATCTGATAAAAGTAATTGGGATCATAGGGATATTATCTATGAGTGTTATTGCTCGACTTTAAGATCTATTTGATTCCT ATTGAGTGTTATCGCTTGACTTCAACATCTGTTTCATTCCTTCGTGACTACAGGTGATAACTGAGTTAAAACCATTTGTT GATCTTGCTGAGAAACTAGGGAGATTGGCTGTCCAGCTGGTAGCGGGAGGAAGCGGTGTAAAAACAGTGAAAGTGACTTA TGCTTCTGCAAGGGCCCCTGATGATCTTGACACCCGTCTTCTTCGTGCCATGATAATCAAGGGTCTGATTGAGCCCATAT CCAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCACTGCTAAACAAAGAGGGCTCAGGATAACTGAGGAGAGGGTCATT CTTGATGGTTCACCTGAGAATCCACTCGAGTTCATCCAGGTCCAGATTGCCAATGTGGAATCCCGATTCGCCAGCGCCAT ATCAGAATCCGGCGAGATTAAGGTTGAGGGCCGGGTGAAAGATGGCATCCCCCATCTGACAAAGGTTGGATTTTTTGAAG TTGATGTGAGTTTGGAAGGCAGCATTATCCTCTGCAGGCAGGTAGATCAGCCAGGGATGATCGGAAAGGTGGGGAGCGTT CTGGGTGAGGAGAATGTGAATGTGAGCTTCATGAGTGTAGGAAGGATTGCTCCTCGTAAACAAGCTGTGATGGCAATTGG AGTGGATGAGCCACCTACCAAACAAACTTTGAAGAAGATTGGGGACATTCCTGCTGTTGAAGAATTCGTTTTCCTTAAAT TGTAAGATTAAAATGGTTGTCTCATCATTTGGCTCTTTTTTGTTTTTTTCCCCACAGATATTGGATTGGGTATGGCTGCC AGATATGCCCGATTTTGATGCATCATCATGAATTGAGTGTAGTTGTAGTTTTGGGTGATTAAAAAAAAGAATAATTCAGC TTTGCAATGAATGGTGTGGTTCAGTGAGTTCTTGGTCAAATGCTGTTTGAAGTTTCAAAGAATTACTTATATTTGGATCT TCTTAATCACTTCTCTCCTAACAAAAGCCACTTTTAGGTGGTCTTTTATTTTTTCATAATCACTTCTCCATATGTATAAA CTGGATAGCTTTTCAAACATACACGGGGCACCTAAAGTAAATTGAGAATAAAGTTCTTCCGTCACACTGTTATTTGTGCC TATCAATATAATTTTTATTTCATTTTTCCTATTTTTTTTTACAAGGCATGGTAATATTTATTTAAATATTCTTGTGTGCA ATATCATTCTTTTTAAAATCACAAATAAGCTGTGTCCAAATAGCTGAATGATTTTGACTAATCTTAAATTATTTTTTTAA TTTAAAAATATACGTTATTTATAAATCACAGGCTACAAATATCACAAAGCTTTTTCATACTAAAATAGTGAAATTAATTA TTGATGTTTTATACGAATAAACATTTCATAACTCAAGGCTCAGGCATTACAATTGAATTATTAATTTTGTCTAAATAAAT TTTGCACTCGTAAGTCGTACCTGATATGCTCCCAAACACACATACATAAGGATTTATTCAGTGTATCAAGTGAGAGGATG ATCTCATTGTTGGAGCTAATCATAATCATAATGGATGATCAAAATGAAATTTAAATAAAATAATCCTGATCATTCATATA TGATTATACAATAAAGATTAACCTCTTATGCTCTCATTTGAGAGACGCCCCTATACATAACTTCTTGTTGATCAAAATCT TAACCTTTGCCAACTTATGCTAGAGTCTACTTGTATTCATAATTTTGAAACCATGCTGCTTTTGATGCCCATAAAAACTG AATCAAATGAACTCTGAATTCTCAATTTATGAACCAGAAAGGAAAGGAACTTCGGCTAGAGTTGTCGGTAGAGAAACGTT GAGGTTATGAAACGCTAAATAGGCAGCAATACCAGTGGCGTAACCAGCAAAAGCAAAGCCACTAATCTGCACAAACGAGA TAAATGAATTCTGTTATGAAATATGCACAAACATTTCATAACATCAACATGTTCAATAATACGTTGGGTAAAAAACTTAA TTAAACACTTATAGCAATACACACTCATCACATAAGTGCTTTCATTAGCTTATTTGAAAAACTTATTGAATTAGTTCAAA ATAACTTAAGAAGTAGTT
CDS sequence (LotjaGi5g1v0327800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCGGAACCACCGCAGTAGCTTCCAAAACCCTCCGACTCCCCTCTCCCTCACTTTCTCTCTCATCAAAACTCCC ACTCTCCTCCGCCTTCTCCGTCTCCCTCCGCCGCCACGGCCACCGTTCCCGCCCCCTCGTCGTCCTCGTCTCCGCCTCCC TCGACGCCAAACCCACCGTCCTCGTCGCCGAGAAGCTCGGCGAAGCGGGTCTCAAACTCCTCAAGGACTTCGCCAACGTC GACTGCTCCTACAATCTCACCCCTGAGGAGCTCTGCACCAAGATCTCCCTCTGCGACGCCTTAATCGTCCGCAGTGGCAC CAAGGTCAATCGCGAGGTGTTTGAATCCTCCGCTGGTAGGCTCAAGGTCGTTGGAAGAGCTGGCGTCGGAATCGACAACG TGGATCTCGCCGCCGCCACTGAGCATGGATGTTTGGTTGTCAATGCCCCCACCGCCAACACTGTTGCTGCCGCTGAGCAC GGTATTGCCCTCCTCGCCGCCATGGCCAGGAACGTTGCTCAAGCTGATGCCTCTGTTAAAGCTGGGAAATGGCAGAGAAG CAAGTATGTTGGAGTGTCCATGGTTGGGAAGACACTAGCTGTGTTGGGATTTGGGAAGGTTGGCACTGAGGTTGCTCGTC GTGCCAAGGGGCTTGGTATGAATGTCATTGCACATGATCCTTATGCCCCTGCGGATCGTGCTCGTGCTATTGGTGTGGAG CTTGTGAGCTTTGATGAGGCCCTTGCCTCTGCGGATTTCATTTCTCTGCATATGCCTCTTACTCCTGCTACTTCAAAGAT GCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTCGAATTGTGAACGTTGCTCGTGGAGGGGTCATCGATGAGG ATGCTCTTGTTAGGGCTTTGGACTCAGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACTGAGGAGCCACCAGCAAAA GACAGCAAGTTGGTTCTTCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGT GGCTATTGAAATAGCAGAAGCTGTGGTTGGGGCATTGAGAGGGGAGCTTGCCGCTACTGCAGTCAATGCACCAATGGTCC CCTCAGAGGTGATAACTGAGTTAAAACCATTTGTTGATCTTGCTGAGAAACTAGGGAGATTGGCTGTCCAGCTGGTAGCG GGAGGAAGCGGTGTAAAAACAGTGAAAGTGACTTATGCTTCTGCAAGGGCCCCTGATGATCTTGACACCCGTCTTCTTCG TGCCATGATAATCAAGGGTCTGATTGAGCCCATATCCAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCACTGCTAAAC AAAGAGGGCTCAGGATAACTGAGGAGAGGGTCATTCTTGATGGTTCACCTGAGAATCCACTCGAGTTCATCCAGGTCCAG ATTGCCAATGTGGAATCCCGATTCGCCAGCGCCATATCAGAATCCGGCGAGATTAAGGTTGAGGGCCGGGTGAAAGATGG CATCCCCCATCTGACAAAGGTTGGATTTTTTGAAGTTGATGTGAGTTTGGAAGGCAGCATTATCCTCTGCAGGCAGGTAG ATCAGCCAGGGATGATCGGAAAGGTGGGGAGCGTTCTGGGTGAGGAGAATGTGAATGTGAGCTTCATGAGTGTAGGAAGG ATTGCTCCTCGTAAACAAGCTGTGATGGCAATTGGAGTGGATGAGCCACCTACCAAACAAACTTTGAAGAAGATTGGGGA CATTCCTGCTGTTGAAGAATTCGTTTTCCTTAAATTGTAA
Protein sequence (LotjaGi5g1v0327800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGTTAVASKTLRLPSPSLSLSSKLPLSSAFSVSLRRHGHRSRPLVVLVSASLDAKPTVLVAEKLGEAGLKLLKDFANV DCSYNLTPEELCTKISLCDALIVRSGTKVNREVFESSAGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEH GIALLAAMARNVAQADASVKAGKWQRSKYVGVSMVGKTLAVLGFGKVGTEVARRAKGLGMNVIAHDPYAPADRARAIGVE LVSFDEALASADFISLHMPLTPATSKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPAK DSKLVLHEQVTATPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPSEVITELKPFVDLAEKLGRLAVQLVA GGSGVKTVKVTYASARAPDDLDTRLLRAMIIKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQ IANVESRFASAISESGEIKVEGRVKDGIPHLTKVGFFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGEENVNVSFMSVGR IAPRKQAVMAIGVDEPPTKQTLKKIGDIPAVEEFVFLKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 599 | 595 | 0.0 | – | |
| PANTHER | 5 | 599 | 595 | 0.0 | – | |
| SUPERFAMILY | 57 | 190 | 134 | 6.43E-34 | – | |
| TIGRFAM | 60 | 597 | 538 | 3.5E-169 | ||
| Pfam | 60 | 369 | 310 | 9.8E-35 | ||
| CDD | 60 | 362 | 303 | 1.96339E-160 | – | |
| Gene3D | 61 | 361 | 301 | 1.1E-111 | – | |
| Gene3D | 153 | 335 | 183 | 1.1E-111 | – | |
| SUPERFAMILY | 156 | 338 | 183 | 1.45E-57 | ||
| Pfam | 162 | 337 | 176 | 3.9E-62 | ||
| SMART | 187 | 341 | 155 | 0.0048 | ||
| ProSitePatterns | 199 | 226 | 28 | - | ||
| ProSitePatterns | 247 | 269 | 23 | - | ||
| ProSitePatterns | 276 | 292 | 17 | - | ||
| Gene3D | 373 | 525 | 153 | 1.8E-18 | ||
| SUPERFAMILY | 375 | 521 | 147 | 1.12E-23 | ||
| SUPERFAMILY | 518 | 596 | 79 | 8.25E-14 | – | |
| Gene3D | 526 | 599 | 74 | 7.9E-16 | – | |
| ProSiteProfiles | 527 | 599 | 73 | 9.476 | ||
| Pfam | 527 | 589 | 63 | 3.0E-9 | ||
| CDD | 528 | 599 | 72 | 2.28314E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoglycerate dehydrogenase activity | Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+. | ||
| Biological process | L-serine biosynthetic process | The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0327800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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