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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0343100 |
| Transcript ID | LotjaGi3g1v0343100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D-3-phosphoglycerate dehydrogenase; TAIR: AT1G17745.1 D-3-phosphoglycerate dehydrogenase; Swiss-Prot: sp|O04130|SERA2_ARATH D-3-phosphoglycerate dehydrogenase 2, chloroplastic; TrEMBL-Plants: tr|I1KG47|I1KG47_SOYBN D-3-phosphoglycerate dehydrogenase; Found in the gene: LotjaGi3g1v0343100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71886314..71892538) extracted from Lotus japonicus Gifu genome v1.2.
GTTTATATGAAAGAGATAAACATAAAAATTGAGAAAACACAAGATTCTTAAATGAAGGATCATAGTCTCAAAGAGACACT TATATTGCAATTTTTAGACATTTACACACCCTTTTACACACTCATTTCTCCAACTCATTTTTACTCAATTGATTTTTCTA TGTCCAAAATTGGAGGTAGAATTCTTTTTGCTTCTGAATGCCACCTACCCACCCCTGTTTTATTTCTTTTTTTGTAGAAA AAGAATCCTGTATTCTTTCAAAAAATTAGCAAAAGAAAAATCCACCACCAAACCATTTACCAAAGAAAAAGAAAAACCTC CCTTTTCCTCCTTCATTGTTGGATTGTATTTGTATATAACCAAGATAGTAATGTCTCTTGGGATTGCAAAAATTGTGTGA AACAATCACAACCATTTTCACCATTTTGAACAAACAAAGGAAGAAGAGAGAGATCAACCAACATGGCTTCCTCTGCTTGC ACCAAACCCATCTTCCCCTCCACCTTCTCCTCTTCTTCCTCTTCAGAATCATCCACGTCCAAATCCTCTAACATCTCATT CCTCAGCTCCACCACCTTCCCCAAGCTCTCTCACGCTTCCACCACCACCTCCCGCCACTCTCAACAACGTTCCACGGTGG TCAACGCTGTTTTGAAAACAGTTGACCAAACACAAACCTCTGTTTCAAGCTCAAGCTCCAACGATGTCGGAAACCTGAGC CTGAAGCCCACCATCCTCGTCTCCGAGAAGCTCGGCGATGCGGGGATTCAGGTGCTGCGCGAGTTCGGTCACGTGGAATG TTCCTACGACCTCTCGCCGGAGGAGCTCTGCAAGAAGATCTCGTCCTGCGATGCTCTGATCGTGAGGAGTGGCACCAAGG TGACGAGGGAGGTGTTTGAAGCTTCTAAAGGGAGGTTGAAGGTTGTGGGGAGAGCTGGTGTGGGTATTGACAATGTGGAT CTGCAAGCTGCTACTGAGTTTGGTTGCCTTGTTGTCAATGCGCCGACGGCGAATACTATTGCTGCGGCGGAGCATGGGAT CGCTCTTCTCGCCGCCATGGCCCGGAATGTTGCACAGGCTGATGCTGCCCTCAAAGCTGGTAAGTTTGAAACCTCAACTT TTTTCATGTCTGGATCAGCTTGTTTTTTGTCAGAATCAATTTTGAAATCCAGAAGTTAGTTACAGAAGCTTTTTATCATC GTTGGTTTTAGCTTCATATATGGTGTTTTATTTGCGGATCTATTCATGGCTATGAAGAATTTAACACTTACAGAAATAAT TGTTATATTTATTACTATAGAGTATGGGCACACGCTTCACCTTGCTCATTGGGGGTGGAAAAAGCATAGATTTCTGGAGT AATAATTAATTCAATGTTTGGATTGAAGGTGAAAGTGTTTTTCAGATTTGGGTTATTTGCGTATACTCTATATTCAGGTG TTCACGATATCTGGACTGTATGATTAAAGATCGGTCAACTCATATTTTTCATCAAGATTGGGCAATAGGCATGTCTTGAA ATTTGAGTTGTCTGATCAAGATTGGACGGCTCAAATTCAGGTACCACATGAATGTTGGGATTTCCTAATCATAGAATTCA TTTTCTGTTTTTTCACAAGTTTCACGAATTCCAAGGAGTTAGAAGCTAAATGAAGAATTTGGCTGATTGTAGCTGAATGT GCTTTTTCTCAATTTATTGGTTGATCCATGATGTTTTGCAAACACACCCTAACTTGATAGCAAGATTTTACTTGAAATGA TCGGATTTAATTTGGAGAGAAGTTGATGGTTTTTAGACAAAAATGTGTTTTTTCATTTTTTTTTTATGTTAGCTTCATCT ATTTATTTTGCTGTTTGGTTAGGGGTAGATAGTGTGGAGTAATTTATTGATATGTTCTTTGTGGATAAAAGTTTCCTTTA ATGGTTACCCTCCTTTGGTTTTTTGTGGAGGTTTAGATCTTGCTGACAAAGATCCAATTTTGCAGGAAAATGGCTGAGAA GCAAGTATGTGGGAGTTTCTATGGTTGGGAAGACATTAGCGGTGATGGGGTTTGGAAAAGTTGGATCTGAAGTGGCGAGG CGTGCAAAGGGGCTTGGGATGAATGTGATTGCTCATGATCCTTATGCTCCAGCTGATAGAGCCCGTGCAATCGGTGTGGA GCTGGTGTCATTTGATCAAGCCATCTCCACTGCTGATTTCATCTCCCTTCACATGCCACTTACTCCAGCTACTAATAAAG TCTTCAATGATGAGACTTTTGCAAAGATGAAGAAGGGAGTTCGCATTGTCAATGTTGCTAGAGGAGGAGTTATTGATGAA GATGCATTAGTAAAAGCACTTGATAGTGGAATTGTTGCTCAGGTGCTGCAATTTTTCTTTTCTTTTTCAATTGTCAACAA GTGCTTGAACTGCAATGTTGGGTATGCCACTGAATATGTGCCTCAAATCTCTATATCTTTGTTACTATTGTGTGTGTTGC AGGCTGCTCTTGACGTGTTTACTGAGGAGCCTCCATCTAAAGATAGCAAGTTAGTTCAACACGAGAATGTCACCGTTACG CCGCATCTTGGAGCTAGCACCAAAGAGGCACAGGTTTGTTTTTCTTTTGGGTCCTGCTTTCAATTCTGTTCTTTAGCTCA CACCATCGTCTGATCAAGTTTCCTTGACCAATTTTGACTCACCAGGAAGGTGTAGCTATTGAAATAGCAGAGGCTGTGGT TGGAGCCTTAAAGGGGGAACTTTCAGCAACTGCAGTCAATGCTCCTATGGTTGCTCCTGAGGTAAATAGCATTGTGACAT TCCAATAAAGTACTACCCATGACTTGTTATATATTGCTATATTATGGAGGCAAATTAAACATAGTGCTTATTTGAAAACC CTTCTTAATTGATTTTGATCTTGAATCCAAAATCAATTCTGGGGGCCAGCTTCGATGAGTAGTATGTGTACTTCAGAATT GATTCTGATGATAGAGAAGTTGATCCTCGAACATGCTAATAGTTGGCTCTTGTGATCAGGTTCTGTTGGAGCTGGCTCCA TATGTGTTGCTAGCTGAGAAACTGGGCAAGTTAGCTGTGCAGTTGGTATCCGGAGGAAGTGGAATCACATCTGTGAAGGT GGTTTACGGATCAGCTAGGGGACCGGACGACCTCGACACCAGACTCCTACGAGCGATGATCACGAAAGGCATCATTGAAC CAATATCAAACACAATTGTGAACCTTGTGAATGCTGATTTCGTTGCCAAGCAGAAAGGGCTTCGCATAAGCGAGGAAAAA GTGGTTGTTGCTGATTCATCTCCAGAGCTACCTGTTGATTCAATCCAGGTACAGGTATTCAATGTGGATTCCAAATTCGC CAGCGCCATATCGGAGAGCGGTCAGATCAGCATTGAAGGGAAAGTGAAGTTTGGTGTGCCCCACCTGACATGTGTGGGAT CCTTTGGTGTTGATGTGAGCTTAGAAGGGAACCTGATCTTGTGCCGACAGGTGGATCAGCCTGGGATGATTGGCAGTGTT GGAAACATACTGGGTGAACGAAACGTCAATGTGAGCTTTATGAGTGTGGGAAGGACATCTCGTGGGAAGAAAGCTATTAT GGCTATTGGTGTGGATGAAGAACCAGGCAAGGAGGCTCTTGAGACTATTGGAGCTGTGCCTGCTATTGAAGAGTTCGTAT TTCTCAAGCTATAGTTGATATTTTTTATCTATATGGATTTGAAGTACCTGTGAGTTTGGGAAAGTAATTAAGTTTAAGAT AGCTATTGATTGAAAAACAAACCTTAGTTTTGTTGCGCGTTTCAGATGAGTTTTACCAGAGGTTTGTAGTGGACTACTAG AGGAAATTTAAGGTTATAGTGGATGTAATGGATGATTGAGAATAAAACTAGCTGCAGACATAAACAGCTAGCATTATTCA CCTCCCCTGTCGTCTTCTCTGCACCAAGTTTTGCCATATATAGCATTATCATGGTTTCAACTTTTGATTTATAGCTTCAT ACATTTGCCGCATACACAAACTGTTGTTTGTCTTTGGTCAGGGTTTAGGGTGTGATTGGTCTTCGTTTCCACTTGTGCAA AGGGAGGTTGACACACAATCCAACATGAAATTGAAAGAAACTTTTTAATTGTCTGTTTATATTGCATAACTAGCTAGTAG ACAAACAAATATTTCATCACGGAGGGAAGCTTTTGGGGTATGCATTTAATTTTGGAAAAGCCAAAGAGTTTATTAAAAGA AGCACAAGGATGCTGCTTCAACCCATGAACACAAGTGTTTTACTAGTTAGTTACATGAATAATATATAAGAAACTACAAG CCCACAACACATTTGAGCTTTAAAATAAAATCGGGTAAATAGTCATATTGGTCCCTAAATGTTCCCACCGACTTCAAAAT CGTCCCTGGAAGAATTTTATTAGGCTCGCGGTCCCCAAATGTGGCAAAAATCAGTCATATTAGTCCCTGACGTTAAAAAC CTCTAACGGACGTTAATCCAATTAATAAAAGTCAACATTATCTTTCTAAGTTTATTTCACTTTAGTCCCTTTCTTCTTTC TTTCATCATCTTCATCCCTCTTCTTCCATCATCTTCACTAAAAACTCCTCCCCTTCTTCATCAACCCATTATGAAACAAA AATAATAAAAAATCAAATAGAATTAAAAACCCAGAACCTTCTATCATCCTCTCTTCTTCTTCATCATCCATCTTCTTCTT CATCATAACAACTCTCAAACTCTCACACAAAATTATTTAAATCCATAAATCAATAAAAATCTTCAAACTCTCTCCTTAAA ATCTCCCAGATCTGACCCTCACCACCATAAGATTGAAACCTGGATCTGCCATATCTACTACCTCCAGGTCTGCAAATTTT CTATTTACTTTTGCAAATTTTCCGGCACGCGTGTGTCTCTGTTATGGACCCAAAATCAGAATCTGAGATTGCAGAGATGG CTGAGAAAAAAGAGAAGAGAGAAATTACAAGTGCTTCAATGATGATAATTGAATGGCAAACAGGAAAAAAAAAAGAGAGA AGAAAGAAAGAAAATTCTCCTTCCAAGGGTTTTCACTTAAACAAAGAATTCCCGTTGTAAAACCAAGCTAGTGGTCAGTT CTCCAACTACAGCACTTCAGAATAAATCCTCTTCTACCTCTTTCTACTTTTTAAACTAATCACAGACATAATCAATTCTC TTACTACTCTTAATCGACTAACTAGTTGTGCAGCTACTTTTTCTCAATTTCTTTCATTCTTGTGTCCTGGGTCCCATCAC CATTTGTGCTTAGGCTTTAAGGCAAGTATAAAGATTAAAGAGAAACTTTCTTTGATTATGGGTCTTTTTGAGGAAAAAGC ATATTTTTGTCTGTTGAGAGAAACAGAGAAATCAATATAACATATGATGTATCCGTGTTTCAATTACACAGTGGAGAATA AAATTACCTTTCTCATGAGATACACCCCTTATATATATATGTTATGGTGTTGAAGGTCAGATCTGGGAGATTTTAAGGAG AGAGCTTGAGGATTTTTATTGATTTATGGATTTAAATAATTTTGTGTGAGAGTTTGAGAGTTGTTATGATGAAGAAGAAG ATGGATGATGAAGAAGAAGAGAGGATGATAGAAGGTTCTGGGTTTTTAATTCTATTTGATTTTTTATTATTTTTGTTTCA TAATGGGTTGATGAAGAAGGGGAGGAGTTTTTTGTGAAGATGATGGAAGAAGGGGGATGAAGATGATGAAAGAAAGAAGA AAGGGACTAAAGTGAAAGAAACTTAGAAAGATAATGTTGAATTTTAATAATTGGATTAACGCCCGTTAGAGGTTTTTAAC GTCAAGGACTAATATGACAAATTTTTGCCACATTTGGGGACCGCGAGCCTAATAAAATTCTTCCAGGGACGATTTTGAAG TCGGTGGGAACATTTAGGGACCAATGTGACCATTTACCCAAATAAAATCTCAGCGTACCAGAACTTTAAACCAGCAACCA CCTGTTGAGAAATTAAACACGTGCCTTGGCGGCTGCTTAGATAGTTTAGTTCAGTTTGAATGAGTCAAATAAAATATCTT CTACTAGCTGTTAGTGGAGATATCAGTTTCTGTTTTGTTTTTAATTATAAGTAACAGTCCCTAGAATTTAGCTAGAATTA AGGAGGTTATCTCTTATCAGTTATTTTCAAGATGTATTTAAATTCAAGTTTGTGATTCAATAAAG
CDS sequence (LotjaGi3g1v0343100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTCTGCTTGCACCAAACCCATCTTCCCCTCCACCTTCTCCTCTTCTTCCTCTTCAGAATCATCCACGTCCAA ATCCTCTAACATCTCATTCCTCAGCTCCACCACCTTCCCCAAGCTCTCTCACGCTTCCACCACCACCTCCCGCCACTCTC AACAACGTTCCACGGTGGTCAACGCTGTTTTGAAAACAGTTGACCAAACACAAACCTCTGTTTCAAGCTCAAGCTCCAAC GATGTCGGAAACCTGAGCCTGAAGCCCACCATCCTCGTCTCCGAGAAGCTCGGCGATGCGGGGATTCAGGTGCTGCGCGA GTTCGGTCACGTGGAATGTTCCTACGACCTCTCGCCGGAGGAGCTCTGCAAGAAGATCTCGTCCTGCGATGCTCTGATCG TGAGGAGTGGCACCAAGGTGACGAGGGAGGTGTTTGAAGCTTCTAAAGGGAGGTTGAAGGTTGTGGGGAGAGCTGGTGTG GGTATTGACAATGTGGATCTGCAAGCTGCTACTGAGTTTGGTTGCCTTGTTGTCAATGCGCCGACGGCGAATACTATTGC TGCGGCGGAGCATGGGATCGCTCTTCTCGCCGCCATGGCCCGGAATGTTGCACAGGCTGATGCTGCCCTCAAAGCTGGAA AATGGCTGAGAAGCAAGTATGTGGGAGTTTCTATGGTTGGGAAGACATTAGCGGTGATGGGGTTTGGAAAAGTTGGATCT GAAGTGGCGAGGCGTGCAAAGGGGCTTGGGATGAATGTGATTGCTCATGATCCTTATGCTCCAGCTGATAGAGCCCGTGC AATCGGTGTGGAGCTGGTGTCATTTGATCAAGCCATCTCCACTGCTGATTTCATCTCCCTTCACATGCCACTTACTCCAG CTACTAATAAAGTCTTCAATGATGAGACTTTTGCAAAGATGAAGAAGGGAGTTCGCATTGTCAATGTTGCTAGAGGAGGA GTTATTGATGAAGATGCATTAGTAAAAGCACTTGATAGTGGAATTGTTGCTCAGGCTGCTCTTGACGTGTTTACTGAGGA GCCTCCATCTAAAGATAGCAAGTTAGTTCAACACGAGAATGTCACCGTTACGCCGCATCTTGGAGCTAGCACCAAAGAGG CACAGGAAGGTGTAGCTATTGAAATAGCAGAGGCTGTGGTTGGAGCCTTAAAGGGGGAACTTTCAGCAACTGCAGTCAAT GCTCCTATGGTTGCTCCTGAGGTTCTGTTGGAGCTGGCTCCATATGTGTTGCTAGCTGAGAAACTGGGCAAGTTAGCTGT GCAGTTGGTATCCGGAGGAAGTGGAATCACATCTGTGAAGGTGGTTTACGGATCAGCTAGGGGACCGGACGACCTCGACA CCAGACTCCTACGAGCGATGATCACGAAAGGCATCATTGAACCAATATCAAACACAATTGTGAACCTTGTGAATGCTGAT TTCGTTGCCAAGCAGAAAGGGCTTCGCATAAGCGAGGAAAAAGTGGTTGTTGCTGATTCATCTCCAGAGCTACCTGTTGA TTCAATCCAGGTACAGGTATTCAATGTGGATTCCAAATTCGCCAGCGCCATATCGGAGAGCGGTCAGATCAGCATTGAAG GGAAAGTGAAGTTTGGTGTGCCCCACCTGACATGTGTGGGATCCTTTGGTGTTGATGTGAGCTTAGAAGGGAACCTGATC TTGTGCCGACAGGTGGATCAGCCTGGGATGATTGGCAGTGTTGGAAACATACTGGGTGAACGAAACGTCAATGTGAGCTT TATGAGTGTGGGAAGGACATCTCGTGGGAAGAAAGCTATTATGGCTATTGGTGTGGATGAAGAACCAGGCAAGGAGGCTC TTGAGACTATTGGAGCTGTGCCTGCTATTGAAGAGTTCGTATTTCTCAAGCTATAG
Protein sequence (LotjaGi3g1v0343100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSACTKPIFPSTFSSSSSSESSTSKSSNISFLSSTTFPKLSHASTTTSRHSQQRSTVVNAVLKTVDQTQTSVSSSSSN DVGNLSLKPTILVSEKLGDAGIQVLREFGHVECSYDLSPEELCKKISSCDALIVRSGTKVTREVFEASKGRLKVVGRAGV GIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLAAMARNVAQADAALKAGKWLRSKYVGVSMVGKTLAVMGFGKVGS EVARRAKGLGMNVIAHDPYAPADRARAIGVELVSFDQAISTADFISLHMPLTPATNKVFNDETFAKMKKGVRIVNVARGG VIDEDALVKALDSGIVAQAALDVFTEEPPSKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALKGELSATAVN APMVAPEVLLELAPYVLLAEKLGKLAVQLVSGGSGITSVKVVYGSARGPDDLDTRLLRAMITKGIIEPISNTIVNLVNAD FVAKQKGLRISEEKVVVADSSPELPVDSIQVQVFNVDSKFASAISESGQISIEGKVKFGVPHLTCVGSFGVDVSLEGNLI LCRQVDQPGMIGSVGNILGERNVNVSFMSVGRTSRGKKAIMAIGVDEEPGKEALETIGAVPAIEEFVFLKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 45 | 45 | - | – | |
| PANTHER | 16 | 631 | 616 | 0.0 | – | |
| PANTHER | 16 | 631 | 616 | 0.0 | – | |
| SUPERFAMILY | 88 | 217 | 130 | 1.32E-34 | – | |
| Pfam | 91 | 400 | 310 | 6.2E-36 | ||
| TIGRFAM | 91 | 629 | 539 | 5.5E-165 | ||
| CDD | 91 | 393 | 303 | 3.50197E-167 | – | |
| Gene3D | 92 | 392 | 301 | 1.5E-111 | – | |
| Gene3D | 184 | 366 | 183 | 1.5E-111 | – | |
| SUPERFAMILY | 187 | 369 | 183 | 6.65E-58 | ||
| Pfam | 193 | 368 | 176 | 1.9E-62 | ||
| ProSitePatterns | 230 | 257 | 28 | - | ||
| ProSitePatterns | 278 | 300 | 23 | - | ||
| ProSitePatterns | 307 | 323 | 17 | - | ||
| Gene3D | 406 | 557 | 152 | 1.4E-15 | ||
| SUPERFAMILY | 407 | 553 | 147 | 5.23E-20 | ||
| SUPERFAMILY | 549 | 627 | 79 | 7.53E-14 | – | |
| Gene3D | 558 | 631 | 74 | 1.8E-16 | – | |
| CDD | 559 | 631 | 73 | 4.07203E-23 | – | |
| ProSiteProfiles | 559 | 631 | 73 | 10.203 | ||
| Pfam | 560 | 621 | 62 | 5.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoglycerate dehydrogenase activity | Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+. | ||
| Biological process | L-serine biosynthetic process | The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0343100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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