Domain Predictions — View

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IPR033771

Source: InterPro

Description

IPR033771 is a Rrp44-like cold shock domain.

<p>Rrp44 (also known as Dis3) constitutes the only active nuclease of the yeast exosome core [[cite:PUB00045434]]. The structure of Rrp44 consists of CSD1, CSD2, RNB, and S1 domains. The two N-terminal cold shock domains (CSD1 and CSD2) and the C-terminal S1 domain all display characteristic OB folds [[cite:PUB00049821]]. This entry represents CSD1.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0101069.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex exonuclease RRP44-like [Cicer arietinum] gi\|502153779\|ref\|XP_004509459.1\|	Domains IPR012340 IPR033771 PF00773 PF17216 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 mobidb-lite	9
LotjaGi4g1v0138200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	24
LotjaGi4g1v0138200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	25
LotjaGi4g1v0138200.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|V7AVD4\|V7AVD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 IPR001900 IPR012340 IPR022966 IPR033770 IPR033771 IPR041505 PF00773 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 mobidb-lite	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	14.29