Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

MF_02006

Source: Hamap

Description

Tyrosine--tRNA ligase [tyrS].

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004831 View details of GO:0004831 AmiGO InterPro QuickGO	Molecular function	Tyrosine-tRNA ligase activity	Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+).	Subterm of GO:0004812

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0203509.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi\|502129554\|ref\|XP_004500343.1\|	Domains G3DSA:1.10.240.10 G3DSA:3.10.290.10 G3DSA:3.40.50.620 IPR001412 IPR002305 IPR002307 IPR002942 IPR014729 IPR024088 IPR024107 MF_02006 PF00579 PF01479 PR01040 PS00178 PS50889 PTHR11766 PTHR11766:SF0 SSF52374 SSF55174 SignalP-TM_GRAM_POSITIVE TIGR00234 cd00165 cd00805	24
Lj3g3v0461620.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi\|502129554\|ref\|XP_004500343.1\|	Domains G3DSA:1.10.240.10 G3DSA:3.10.290.10 G3DSA:3.40.50.620 IPR001412 IPR002305 IPR002307 IPR002942 IPR014729 IPR024088 IPR024107 MF_02006 PF00579 PF01479 PR01040 PS00178 PS50889 PTHR11766 PTHR11766:SF0 SM00363 SSF52374 SSF55174 TIGR00234 cd00165 cd00805	24
LotjaGi3g1v0053200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp\|Q9M876\|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|A0A072UXA5\|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi3g1v0053200	Domains G3DSA:1.10.240.10 G3DSA:3.10.290.10 G3DSA:3.40.50.620 IPR001412 IPR002305 IPR002307 IPR002942 IPR014729 IPR024088 IPR024107 IPR036986 MF_02006 PF00579 PF01479 PR01040 PS00178 PS50889 PTHR11766 SM00363 SSF52374 SSF55174 TIGR00234 cd00165 cd00805	24
LotjaGi6g1v0104800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp\|Q9M876\|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|A0A072UXA5\|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800	Domains G3DSA:1.10.240.10 G3DSA:3.10.290.10 G3DSA:3.40.50.620 IPR001412 IPR002305 IPR002307 IPR002942 IPR014729 IPR024088 IPR024107 IPR036986 MF_02006 PF00579 PF01479 PR01040 PS00178 PS50889 PTHR11766 SSF52374 SSF55174 SignalP-TM TIGR00234 cd00165 cd00805	24
LotjaGi6g1v0104800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp\|Q9M876\|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|A0A072V2K0\|A0A072V2K0_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800	Domains G3DSA:1.10.240.10 G3DSA:3.10.290.10 G3DSA:3.40.50.620 IPR001412 IPR002305 IPR002307 IPR002942 IPR014729 IPR024088 IPR024107 IPR036986 MF_02006 PF00579 PF01479 PR01040 PS00178 PS50889 PTHR11766 SSF52374 SSF55174 TIGR00234 cd00165 cd00805	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00805	CDD	1	20.00